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Biology Life 102
Chapter 20 DNA Technology and Genomics
42
Biology
Undergraduate 1
12/04/2012

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Term
What is the DNA-protein complex called in eukaryotes?
Definition
Chromatin.
Term
When nucleotide sequences from two different sources, often 2 species, are combined in vitro in the same DNA molecule it makes what?
Definition
Recombinant DNA.
Term
Methods for making recombinant DNA are central to what?
Definition
Genetic engineering
Term
What is the manipulation of organisms or their genetic components to make useful products?
Definition
Biotechnology.
Term
To work with specific genes, scientists prepare gene-sized pieces of DNA in identical copies. This process is called what?
Definition
DNA cloning.
Term
What are small, circular DNA molecules that replicate separately from the bacterial chromosome?
Definition
Plasmids.
Term
What involves using bacteria to make multiple copies of a gene?
Definition
Gene cloning.
Term
Foreign DNA is inserted into a plasmid, and the recombinant plasmid is inserted into the bacterial cell. Reproduction in the bacterial cell results in the cloning of the plasmid including the foreign DNA. This results in what?
Definition
The production of multiple copies of a single gene.
Term
What cut DNA molecules at specific sites?
Definition
Restriction enzymes.
Term
What are sites where restriction enzymes cut DNA molecules?
Definition
Restriction sites.
Term
A restriction enzyme usually makes many cuts, yielding what?
Definition
Restriction fragments.
Term
In what way do the most useful restriction enzymes cut the DNA?
Definition
A "staggering" way that produces fragments with "sticky ends" that bond with complimentary sticky ends of other fragments.
Term
What is an enzyme that seals bonds between restriction fragments?
Definition
DNA ligase.
Term
In gene cloning, what is the original plasmid called?
Definition
The cloning vector.
Term
What is a DNA molecule that can carry foreign DNA into a host cell and replicate?
Definition
A cloning vector.
Term
What is a collection of many bacterial or phage clones, each containing copies of a particular DNA segment from a foreign genome?
Definition
Genomic library.
Term
What is a large plasmid that has been trimmed down and can carry a large DNA insert?
Definition
A BAC (Bacterial Artificial Chromosome).
Term
What is made by cloning DNA made in vitro by reverse transcription of all the mRNA produced by a particular cell?
Definition
A cDNA library.
Term
This type of library represents only part of the genome-only the subset of genes transcribed into mRNA in the original cells.
Definition
A cDNA library.
Term
How can a clone carrying the gene of interest be identified?
Definition
With a nucleic acid probe having a sequence complementary to the gene.
Term
What is the process of identification of a clone with a nucleic acid probe called?
Definition
Nucleic acid hybridyzation.
Term
How can a DNA probe screen a large number of clones for the gene of interest?
Definition
A probe can be synthesized that is complementary to the gene of interest.
Term
After the gene of interest is found, what can be done?
Definition
The clone carrying the gene can be cultured.
Term
What are the benefits of cloning a gene?
Definition
After a gene has been cloned, it's protein product can be produced in a larger scale for research.
Term
To overcome differences in promoters and other DNA control sequences, scientists usually employ what?
Definition
An expression vector: A cloning vector that contains a highly active prokaryotic promoter.
Term
The use of what helps to avoid gene expression patterns?
Definition
1. Cultured eukaryotic cells
and
2. Yeast Artificial Chromosomes (YACs)
Term
What are the benefits of YACs?
Definition
They behave normally in mitosis, and can carry more DNA than a plasmid.
Term
What are the benefits of Eukaryotic hosts?
Definition
They can provide the post-translational
modifications that many proteins require.
Term
What are 2 methods of introducing recombinanat DNA into eukaryotic cells?
Definition
1. Electropartion (brief electrical pulse).
2. Inecting DNA with microscopic needles.
Term
These can produce many copies of a specific target segment of DNA.
Definition
A PCR (Polymerase Chain Reaction).
Term
What is the 3 step cycle used to produce a PCR?
Definition
1. Heating
2. Cooling
3. Replication
(Done in a thermocycler)
Term
What are the three steps in the PCR chain?
Definition
1. Denature
2. Anneal
3. Elongation
Term
one indirect method of rapidly analyzing and comparing genomes is what?
Definition
Gel electrophoresis.
Term
What is it called when DNA fragments produced by restriction enzyme digestion of a DNA molecule are sorted by gel electrophoresis?
Definition
Restriction fragment analysis.
Term
What is cDNA?
Definition
Complementary DNA.
Term
What is a YAC?
Definition
Yeast artificial chromosome.
Term
What is a cloning vector that contains a highly active prokaryotic promoter?
Definition
Expression vector.
Term
What is an example of DNA technology?
Definition
The microarray, a measurement of gene expression of thousands of different genes.
Term
What do "sticky ends" do?
Definition
Bond with complemetary sticky ends of other fragments.
Term
What is the collection of recombinant vector clones produced by cloning DNA fragments from an entire genome?
Definition
Genomic library.
Term
How is a genomic library that is made using bacteriophages stored?
Definition
As a collection of phage clones.
Term
What are another type of vector used in DNA library construction?
Definition
BACs.
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