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Biology Chapter 4our
The one before 5
15
Biology
Undergraduate 1
09/10/2012

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Term
Organic Chemistry
Definition
the study of compounds that contain carbon
Term
Hydrocarbons
Definition
Organic molecules consisting only of Carbon and Hydrogen
Term
Isomers
Definition
Compounds with the same molecular formula but different structures and thus, properties
Term
Structural Isomers
Definition
Different covalent arrangement of their atoms
Term
Geometric Isomers
Definition
Have the same covalent arrangements but differ in spatial arrangements
Term
Enantiomers
Definition
Isomers that are mirror images of one another
Term
Functional Groups
Definition
the components of organic molecules that are most commonly involved in chemical reactions
Term
Hydroxyl Group
Definition

[image]

(--OH)

A hydrogen atom is bonded to an oxygen atom, which in turn is bonded to the carbon skeleton 

 

Make up the alchohols (specific names usually end in -ol)

 

Functional Properties:

Is polar as a result of the electronegative oxygen atom 

Can form hydrogen bonds with water moleculers, helping to dissolve organic compounds 

Term
Carbonyl Groups
Definition

[image]

Consists of a carbon atom joined to an oxygen with a double bond 

 

Ketones is the carbonyl group is within a carbon skeleton

Aldehydes if the carbonyl group is at the end of the carbon skeleton 

 

Functional Properties:

These two groups are found in sugars, giving rise to two major groups of sugars: aldoses (containing an aldehyde) and ketoses (containing a ketone) 

Term
Carboxyl Groups
Definition

[image]

An oxygen atom is double-bonded to a carbon atom that is also bonded to an OH group, the entire assembly is called a carboxyl group (COOH)

 

Carboxylic acids, or organic acids

 

EX:

Acetic acid, which gives vinegar its sour taste

 

Functional Properties:

Has acidic properties because the covalent bond between oxygen and hydrogen is so polar

Found in cells in the ionized form with a charge of 1- and called a carboxylate ion

Term
Amino Groups
Definition

[image]

The amino group

(—NH2) consists of a

nitrogen atom bonded

to two hydrogen atoms

and to the carbon 

skeleton.

 

Example:Glycine[image]

 

Because it also has a

carboxyl group, glycine

is both an amine and

a carboxylic acid;

compounds with both

groups are called 

amino acids.

 

Functional Properties:

Acts as a base

Ionizes with a charge of +1 under cellular conditions 

Term
Sulfhydryl Group
Definition

[image]

The sulfhydryl group

consists of a sulfur atom

bonded to an atom of

hydrogen; resembles a

hydroxyl group in shape.

 

Name of Compound:

Thiols 

 

Ex:

 

[image]

Cysteine is an important

sulfur-containing amino

acid.

 

Functional Properties:

Two sulfhydryl groups

can react, forming a

covalent bond. This

―cross-linking‖ helps

stabilize protein

structure.

Cross-linking of

cysteines in hair

proteins maintains the

curliness or 

straightness

of hair. Straight hair can

be ―permanently‖ curled

by shaping it around

curlers, then breaking

and re-forming the

cross-linking bonds.

Term
Phosphate Groups
Definition

In a phosphate group, a

phosphorus atom is bonded to

four oxygen atoms; one oxygen

is bonded to the carbon skeleton;

two oxygens carry negative

charges. The phosphate group

(—OPO32)is an

ionized form of a phosphoric acid

group (—OPO3H2);note the two

hydrogens).

 

Name of Compound:

Organic phosphates 

 

Functional Properties:

Contributes negative charge

to the molecule of which it is

a part (2– when at the end of

a molecule; 1– when located

internally in a chain of

phosphates).

Has the potential to react

with water, releasing energy

Term

Methyl Group 

 

Definition

[image]

 

A methyl group consists of a

carbon bonded to three

hydrogen atoms. The methyl

group may be attached to a

carbon or to a different atom

 

Compund Name: 

Methylated compounds 

 

Functional Properties:

Addition of a methyl group

to DNA, or to molecules

bound to DNA, affects

expression of genes.

Arrangement of methyl

groups in male and female

sex hormones affects

their shape and function

Term
ATP
Definition
(adenosine triphosphate) the primary energy-transferring molecule in the cell
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