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Biology 2
Chapters 22, 23, 24 and 25
243
Biology
Undergraduate 1
09/17/2023

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Term
All organisms share many characteristics:
Definition
•Composed of one or more cells
•Carry out metabolism
•Transfer energy with ATP
•Encode hereditary information in DNA
Term
Systematics
Definition
Reconstruction and study of evolutionary relationships
Term
phylogeny
Definition
Represents a hypothesis about patterns of relationship among species
Term
What was Darwin's views?
Definition
that all species were descended from a single common ancestor
He depicted this history of life as a branching tree
“Descent with modification”
Term
A derived characteristic is
Definition
Similarity that is inherited from the most recent common ancestor of an entire group
Term
An ancestral characteristic is
Definition
Similarity that arose prior to the common ancestor of the group
Term
Characters can be any aspect of the phenotype
Definition
Morphology
Behavior
Physiology
DNA
Term
Characters should exist
Definition
exist in recognizable character states
Example: Character “teeth” in amniote vertebrates has two states, present in most mammals and reptiles, and absent in birds and turtles
Term
Presence of hair in mammals is ancestral or derived?
Definition
DERIVED
Term
presence of lungs in mammals is ancestral or derived?
Definition
ANCESTRAL
Term
Cladogram
Definition
Diagram that depicts a phylogeny (hypothesis of evolutionary relationships)
Term
Clade
Definition
Species that share a common ancestor as indicated by the possession of shared derived characters

Evolutionary units that refer to a common ancestor and all descendants
Term
Synapomorphy
Definition
derived character shared by clade members
Term
Plesiomorphies
Definition
ancestral states
Term
Symplesiomorphies
Definition
shared ancestral states
Term
Homoplasy
Definition
a shared character state that has not been inherited from a common ancestor
Term
Systematists increasingly use
Definition
DNA sequence data to construct phylogenies
Large number of characters can be obtained through sequencing

Character states are polarized by referencing the sequence of an outgroup
Term
Molecular Clock
Definition
Assumes that the rate of evolution of a molecule is constant through time
Term
Classification
Definition
How we place species and higher groups into the taxonomic hierarchy
Genus, family, class, etc.
Term
Monophyletic group
Definition
Includes the most recent common ancestor of the group and all of its descendants (clade)
Term
Paraphyletic group
Definition
Includes the most recent common ancestor of the group, but not all its descendants
Term
Polyphyletic group does not include
Definition
the most recent common ancestor of all members of the group
Term
Taxonomic hierarchies are based on
Definition
shared traits, should reflect evolutionary relationships
Term
Biological species concept (BSC)
Definition
Defines species as groups of interbreeding populations that are reproductively isolated
Term
Phylogenetic species concept (PSC)
Definition
Species is a population or set of populations characterized by one or more shared derived characters
Term
BSC cannot be applied to
Definition
allopatric populations
Term
PSC looks to the past for what?
Definition
to see if they have been separated long enough to develop their own derived characters
Term
BSC is strictly _______ and PSC is _____ and _____
Definition
sexual; asexual and sexual
Term
Taxonomy is ...
Definition
The science of classifying living things
Term
Taxonomic Hierarchy
Definition
Shifted from emphasis on identifying and naming organisms to constructing evolutionary hypotheses to explain the relatedness of species


Organisms grouped into eight levels
Domain, kingdom, phyl
um, class, order, family, genus, and species
Genus level and higher are capitalized
Other categories assist with classification
Term
Each hierarchal level is called a
Definition
taxon
Term
Organisms grouped into eight levels
Definition
Domain, kingdom, phylum, class, order, family, genus, and species
Term
What is the largest taxon
Definition
Domain
Term
What is the most abundant organism on earth
Definition
Bacteria
Term
Bacteria plays critical roles throughout the biosphere by
Definition
Carbon and sulfur cycling
Extract nitrogen from air
Photosynthesis
12 to 15 major groups of bacteria
Based on ribosomal RNA sequences
Term
Archaea 1
Definition
Typically live in extreme environments
Diverged early from bacteria
More closely related to eukaryotes than to bacteria
Based on genes that encode ribosomal RNAs
Swapped genetic information via horizontal gene transfer (HGT) with other microorganisms
Term
Archaea 2
Definition
All archaea share certain key characteristics
Lack peptidoglycan in cell walls
Distinct lipid membrane structure
Distinct rRNA sequences
Genes have introns
Grouped into three general categories
Methanogens
Extremophiles
Nonextreme archaea
Term
Eukarya
Definition
Most common model shows Eukarya branched from within Archaea
Their structure and function allowed multicellular life to evolve
The roots of the eukaryotic tree remain elusive
Term
Eukarya molecular data support five monophyletic supergroups
Definition
Excavata
S A R
Archaeplastida
Amoebozoa
Opisthokonta
Term
Three domains of Life
Definition
Bacteria
Eukarya
Archaea
Term
Eukaryotes have an extensive endomembrane system that
Definition
Divides cell into functional compartments
Term
Mitochondria and chloroplasts entered early eukaryotic cells by
Definition
endosymbiosis
Term
Compartmentalization of cells enabled the advent of
Definition
eukaryotes
Term
Bacteria and archaea are distinct from eukaryotes in that they have little or
Definition
Compartmentalization
Term
True multicellularity
Definition
– cells are differentiated, in contact and their functions are coordinated
Term
Eukaryotic species as a group carry out _____ reproduction
Definition
sexual
Term
First eukaryotes were probably ______
Diploids arose on separate occasions through ______
Definition
haploid ; fusion
Term
Prokaryotes are the
Definition
Smallest and simplest, and most abundant forms of life
Term
Prokaryotes likely originated on earth over_____ years ago Our knowledge of early life comes from microfossils Fall into 2 domains Bacteria Early cyanobacteria produced oxygen which allowed for diversity Archaea Earliest Archaea discovered were extremophiles
Definition
3.5 billion years ago
Term
Our knowledge of early life comes from microfossils
Fall into 2 domains
Bacteria
Early cyanobacteria produced oxygen which allowed for diversity
Archaea
Earliest Archaea discovered were extremophiles
Definition
microfossils
Term
Prokaryotes fall into 2 domains
Definition
Bacteria
Archaea
Term
Archaea resembles ______ instead of bacteria
Definition
eukaryotes
Term
three domains of life tree is based on ______ sequences
Definition
rRNA
Term
Prokaryotes are fundamentally different from eukaryote
Definition
bc most are single-celled, may stick together to form associations and biofilms
Size varies tremendously
Most are less than 1 µm in diameter

Single circular chromosome in nucleoid region 
Often have plasmids
Term
Most prokaryote divide by_______, a form of asexual reproduction
Definition
binary fission
Term
Genetic recombination
Definition
Occurs through horizontal gene transfer 
Not a form of sexual reproduction
Term
Flagella
Definition
Single protein fiber
Bacterial flagella rotate like propellers
Term
Internal compartmentalization
Definition
No extensive membrane-bounded organelles
Some have structures that resemble organelles
Surrounded by a lipid membrane or protein shell
Plasma membrane can be invaginated
Isolates respiration or photosynthesis
Term
Archaea and bacteria both lack a
Definition
membrane-bound nucleus and endomembrane system
Term
archaea and bacteria have
Definition
distinctly different cell types.
Term
Bacteria membrane
Definition
Fatty acid chains joined to glycerol phosphate with ester linkages
Stereoisomer of glycerol-3-phosphate
Membranes are unbranched and are diethers
Term
Archaea membrane
Definition
Non-polar hydrocarbons called isoprenoids joined to glycerol phosphate with ether linkages
Stereoisomer of glycerol-1-phosphate
Membranes can be branched, in cyclic compounds, and may be tetraethers that can form a monolayer membrane
Term
Bacteria have _______
Archaea lack _____________
Definition
peptidoglycan
Term
S-layer outside of wall or replacing wall
Definition
Composed of glycoproteins that form a rigid paracrystalline surface
Term
Unique flagella
Definition
Evolved independently from bacterial flagella
Term
bacteria and archaea Both have ______replication origin
Definition
single
Term
Methanogenesis
Definition
All organically produced methane comes from archaea
Term
Ammonia oxidation
Definition
only found in archaea and is a major contributor to global nitrogen cycle
Term
Bacteria have 3 basic shapes
Definition
Bacillus – Rod-shaped
Coccus – Spherical
Spirillum – Helical-shaped
Term
Peptidoglycan forms a rigid network
Definition
Unique to bacteria
Maintains shape
Withstands hypotonic environments
Term
Gram-positive bacteria have a _______ peptidoglycan wall and stain a _______color
Definition
thicker ; purple
Term
Gram-negative bacteria contain _______ peptidoglycan and (do not/do) retain the purple color
Definition
less ; do not
Term
Counterstain to appear
Definition
dark pink
Term
Capsule
Definition
Gelatinous layer found in some bacteria
Surrounds the cell wall
Aids in attachment
Protects from the immune system
Term
Flagella
Definition
Slender, rigid, helical structures
Composed of the protein flagellin
Involved in locomotion – spins like propeller
Term
Pili
Definition
Short, hairlike structures
Found in gram-negative bacteria
Aid in attachment and conjugation
Term
Endospores develop a thick wall around their _______ and a small portion of the _________
Definition
genome and cytoplasm
Term
Endospores form when exposed to
Definition
environmental stress
Term
Endospores are
Definition
highly resistant to environmental stress
Especially heat
Term
endospores can cause
Definition
tetanus, botulism, and anthrax
Term
Bacterial microcompartments (BMCs)
Definition
Bound by semipermeable protein shell
Function as storage or to isolate metabolic pathways
Term
Prokaryotic cells often have complex ______ membranes
Definition
internal
Term
Prokaryotes do not reproduce sexually, there are 3 types of horizontal gene transfer
Definition
Conjugation – mediated by plasmids
Transduction – mediated by viruses
Transformation – direct uptake of DNA
All 3 processes also observed in archaea
Term
Virtually any gene can be transferred
Occurs via
Definition
accidents in the lytic cycle
Term
When viruses go on to infect another cell
Definition
they transfer the bacterial DNA and it can be incorporated by homologous recombination
Term
Specialized Transduction occurs via
Definition
accidents in the lysogenic cycle
Term
DNA fragments are released from damaged or dead cells and are taken up by
Definition
another live cell
Term
The new DNA is incorporated into the live cell's genome by
Definition
homologous recombination
Term
The proteins needed for natural transformation are encoded by
Definition
the bacterial chromosome
Term
Artificial transformation
Definition
Some species do not naturally undergo transformation
Can be accomplished in the lab
Critical for gene cloning and DNA manipulation
Term
The ________ a gene is from the origin of transfer, the ________it will be transferred
Definition
further and later
Term
Photoautotrophs
Definition
energy from sun, convert inorganic C O2 to organic carbon
Term
Sulfur bacteria
Definition
use H 2 S as electron donor, anoxygenic
Term
Chemolithoautotrophs
Definition
energy from oxidizing inorganic substances
Term
Photoheterotrophs
Definition
light as energy source but obtain organic carbon made by other organisms
Term
Chemoheterotrophs
Definition
both carbon atoms and energy from organic molecules
Term
Tuberculosis (TB)
Definition
Second only to HIV/AIDS as cause of death by an infectious agent
Agent: Mycobacterium tuberculosis
Afflicts the respiratory system
Easily transferred from person to person through the air
In 2017, 10 million people contracted TB and about 1.6 millions died from the disease
Term
Peptic ulcers
Definition
Helicobacter pylori is the main cause
Treated with antibiotics
Term
Dental caries (tooth decay)
Definition
Plaque consists of bacterial biofilms
Streptococcus sobrinus and S. mutans ferments sugar to lactic acid
Tooth enamel degenerates, leaving tooth vulnerable to infection
Term
Viruses or not organisms the have
Definition
No cellular structure, independent metabolism or reproduction
Not alive or dead but inactive or active
Term
Most viruses come in two simple shapes
Definition
Helical - rodlike
EX. Tobacco mosaic virus
Icosahedral – soccer ball shape
Term
Some viruses are complex such as
Definition
Icosahedral head with helical tail
Bacteriophages
Term
Largest known virus is
Definition
Pithovirus virus
Revived from 30,000-year-old Siberian ice in 2014
Virions are 1.5 µm long, larger than some bacteria
Term
Lytic cycle
Definition
Production and release of new viruses
Virus usually causes the cells to rupture, or lyse
Allows infection of new cells or horizontal transmission of viruses
Term
Lysogenic cycle
Definition
Latent phase
Vertical transmission of viruses through cell division
Term
In lysogenic phage, expression of the viral genome is repressed by
Definition
a viral regulatory protein
Term
If the lysogen becomes stressed
Definition
the genome can be de-repressed
Term
Conditions for Pandemics
Three conditions are necessary for a pandemic
Definition
New strain must contain a novel combination of H and N spikes

New strain must be able to replicate in humans and cause death
New strain must be efficiently transmitted between humans.
Term
Eukaryotic cells differ from prokaryotes bc of
Definition
Presence of a cytoskeleton
Compartmentalization (nucleus and organelles)
Term
The nucleus and endoplasmic reticulum arose from
Definition
infoldings of prokaryotic cell membrane
Term
Many organelles evolved via endosymbiosis between an __________ and a ____________
Definition
ancestral eukaryote and bacterial cell
Term
origins of Mitochondria
Definition
Aerobic bacteria engulfed by larger bacteria
Term
origins of Chloroplasts
Definition
Larger bacteria engulfed smaller photosynthetic bacteria
Chloroplasts come from single line of cyanobacteria
Hosts are not monophyletic
Term
Brown algae
Definition
engulfed red algae that already had chloroplasts
Term
Endosymbiosis supported by
Definition
DNA inside mitochondria and chloroplasts
DNA similar to bacteria DNA in size and character
Term
Protists
Definition
Most diverse group of eukaryotes
Term
Cell surface
Definition
Plasma membrane
Extracellular material (ECM) in some
Diatoms – Silica shells
Term
Cysts
Definition
Dormant cell with resistant outer covering
Used for disease transmission
Term
locomotion occurs how many time in flagella
Definition
one or more
Term
locomotion occurs how many time in cilia
Definition
shorter or more numerous than flagella
Term
Lobopods
Definition
large, blunt
Term
Filopods
Definition
thin, branching
Term
Axopods
Definition
thin, long
Term
nutrition is
Definition
Heterotrophic or autotrophic
Term
Heterotrophic is
Definition
Phagotrophs – Ingest particulate food matter
Term
Autotrophs are
Definition
Photosynthetic
Chemoautotrophic
Term
Mixotrophs are
Definition
both phototrophic and heterotrophic
Term
process of multicellular
Definition
From single cells to colonies to true multicellularity
Term
Asexual Reproduction
Definition
Typical mode of reproduction
Some species have an unusual mitosis
Term
Mitosis
Definition
equal size daughter cells
Term
Budding
Definition
one daughter cell smaller
Term
Schizogony
Definition
cell division preceded by several nuclear divisions; produces several individuals
Term
Sexual reproduction
Definition
May be obligate, or only under stress
Term
The Protists as a group are not
Definition
monophyletic
Term
Excavata
Definition
This group consists of diplomonads, parabasalids, and euglenozoans
Term
Diplomonads
Definition
Unicellular
Move with flagella
2 nuclei
Giardia intestinalis- human parasite
Mitochondrion-related organelles (MROs)
Term
Parabasalids
Definition
Live in termite guts
Host cellulose degrading bacteria
Trichomonas vaginalis – STD
Undulating membrane for locomotion
Use flagella
Lack mitochondria, but have MROs – derived trait
Term
uglenozoa
Definition
Among the earliest eukaryotes to possess mitochondria
One third have chloroplasts and are autotrophic
Others lack chloroplasts and are heterotrophic
All have a flexible pellicle
No sexual reproduction
Term
Euglena
Definition
Two anterior (and unequal) flagella
Attached at reservoir
Contractile vacuoles – collect excess water
Stigma – movement towards light
Numerous small chloroplasts
Symbiosis from ingestion of green algae
Term
Kinetoplastids
Definition
Second major group in Euglenozoa
Unique, single mitochondrion
DNA maxicircles and minicircles
Trypanosomes cause human diseases
African sleeping sickness – tsetse fly
Leishmaniasis – sand fly
Chagas disease – feces of triatomine bugs
Term
Trypanosoma
Definition
Difficult to control because organisms repeatedly change their protective coat
Release of sterilized flies
Traps scented like cows but treated with insecticides
Sequencing of genomes revealed core of common genes in all 3 – hope for single drug target
Term
SAR: Stramenopiles and Alveolates
Definition
This is a supergroup consisting of three branches: Alveolata, Stramenopila, and Rhizaria
Term
Stramenopila
Definition
Brown algae, diatoms, and oomycetes
Very fine hairs on their flagella
A few species have lost their hairs during evolution
Term
Brown algae 2
Definition
Conspicuous seaweeds of northern regions
Life cycle involves alternation of generations
Sporophyte – multicellular and diploid
Gametophyte – multicellular and haploid
Not plants
Term
Diatoms
Definition
Phylum Chrysophyta
Photosynthetic, unicellular organisms
Unique double shells made of silica
Some move using raphes
Two long grooves lined with vibrating fibrils
Term
Oomycetes
Definition
“Water molds”
Either parasites or saprobes
Were once considered fungi
Motile zoospores with two unequal flagella
Produced asexually
Undergo sexual reproduction
Found in water or on land
Phytophthora infestans
Irish potato famine (1845 to 1847)
Term
Alveolata
Definition
Flattened vesicles called alveoli
Common lineage despite diverse modes of locomotion
Term
three groups of alveolata
Definition
Dinoflagellates
Apicomplexans
Ciliates
Term
Dinoflagellates
Definition
Photosynthetic, unicellular with two flagella
Live in aquatic environments
Some are luminous
Do not appear to be directly related to any other phylum
“Red tide” are “blooms” – fish, birds, and marine mammals may die from toxins
DNA not complexed with histones
Term
Apicomplexans
Definition
unique arrangement of organelles at one end of the cell which enables the cell to invade its host

Most common in Africa
Control focused on vector control and insecticide-treated mosquito nets
Resistance to treatment and insecticides continues to be a problem
Vaccine, Mosquirix, only moderately effective
Term
Gregarines
Definition
Found in the intestines of arthropods, annelids, and mollusks
Term
Toxoplasma gondii
Definition
Causes infections in humans with immunosuppression
Can cross placental barrier to harm fetus
Term
Pellicle
Definition
tough but flexible outer covering
Term
2 types of nuclei
Definition
Micronucleus – without will reproduce asexually
Macronucleus – essential for function
Term
Have two types of vacuoles
Definition
Food vacuoles – digestion of food
Contractile vacuoles – regulation of water balance
Term
SAR: Rhizaria
Definition
Rhizaria use pseudopods for locomotion
Term
Three distinct monophyletic groups of Rhizaria
Definition
Radiolaria, Foraminifera, and Cercozoa
Term
Actinopoda (Radiolarians)
Definition
Glassy exoskeletons made of silica
Needlelike pseudopods
Term
Foraminifera
Definition
Heterotrophic marine protists
Pore-studded shells called tests, through which thin podia emerge
Use podia for swimming and feeding
Complex life cycles with haploid and diploid generations
Term
Cercozoa
Definition
A morphologically diverse group of primarily soil protists
Locomotion with flagella or pseudopods
Some have silica-based shells made of scales or plates
Term
Archaeplastida
Definition
consists of Rhodophyta, Chlorophyta, Charophytes, and land plants
Term
Rhodophyta
Definition
Red algae range from microscopic to very large
Lack flagella and centrioles
Have accessory photosynthetic pigments within phycobilisomes
Origin has been a source of controversy
Tentatively, treated as a sister clade of Chlorophyta (green algae)
Term
Green Algae
Definition
Land plants arose from an ancestral green alga only once during evolution
Term
Green alga consist of 2 monophyletic groups
Definition
Chlorophyta
Streptophytes (contains the Charophytes)
Term
Unicellular Chlorophytes
Definition
Early green algae probably resembled Chlamydomonas reinhardtii
Diverged from land plants over 1 BYA
Several lines of evolutionary specialization derived from chlorophytes
Term
Multicellular Chlorophytes
Definition
Cell specialization in colonial chlorophytes
Multicellularity arose many times in the eukaryotes
Colonial chlorophytes are examples of cellular specialization
Term
Haplodiplontic Life Cycles in Multicellular Chlorophytes
Definition
Ulva
Multicellular chlorophyte
Identical gametophyte and sporophyte generations
Consist of flattened sheets two cells thick
Term
Multicellular diploid stage
Definition
sporophyte
Term
sporophyte
Definition
Produces haploid spores by meiosis
Diploid spore mother cells (sporocytes) undergo meiosis in sporangia
Produce 4 haploid spores
First cells of gametophyte generation
Term
Multicellular haploid stage
Definition
gametophyte
Term
gametophyte
Definition
Spores divide by mitosis
Produces gametes by mitosis
Gametes fuse to form diploid zygote
First cell of next sporophyte generation
Term
Charophytes distinguished from chlorophytes by
Definition
phylogenetic relationship to land plants
Term
Charophytes have
Definition
haplontic life cycles
Evolution of diplontic embryo and haplodiplontic life cycle occurred after move to land
Term
2 candidate Charophyta clades
Definition
Charales
Coleochaetales
Term
Both charophyte clades form _________ around the edges of freshwater ponds and marshes
One species must have successfully inched its way onto land through adaptations to drying
Definition
green mats
Term
Amoebozoans
Definition
Amoebas move by means of pseudopods
Term
Pseudopods are
Definition
flowing projections of cytoplasm
Extend and pull the amoeba forward
Engulf food particles
Term
Amoeba
Definition
free living
Found in the soil as well as freshwater
Some are parasitic
Acanthomoeba enters the body through a wound and crosses the blood-brain barrier into the brain
Term
Slime Molds
Definition
Were once considered fungi
Term
Slime molds
Definition
include two lineages
Plasmodial slime molds
Huge, single-celled, multinucleate, oozing masses
Cellular slime molds
Single cells combine and differentiate, creating an early model of multicellularity
Term
Plasmodial Slime Molds
Definition
Stream along as a plasmodium
Nonwalled, multinucleate mass of cytoplasm
Form called feeding phase
Ingests bacteria and other organic material
When food or moisture is scarce, organism forms sporangia, where spores are produced
Term
Cellular Slime Molds
Definition
Important group for the study of cell differentiation because of their relatively simple developmental systems
Term
Choanoflagellates
Definition
Colonial choanoflagellates resemble their close animal relatives, the Sponges
Choanoflagellida are likely the ancestors of animals
Term
Mycologists believe there may be as many as _______ fungal species
Definition
1.5 million
Term
Fungi can be
Definition
Single-celled or multicellular
Sexual or asexual
Specialized to extract and absorb nutrients from surroundings
Animal and fungi share several characteristics
Term
hyphae
Definition
Multicellular fungi consist of long, slender filaments
Term
Some hyphae are continuous called ___________hyphae
Others are divided by
Definition
coenocytic and septa
Term
______flows throughout hyphae
Definition
Cytoplasm
Term
Mycelium
Definition
mass of connected hyphae
Grows through and digests its substrate
Term
Fungal cell walls include
Definition
chitin
Also found in the hard shells (exoskeletons) of arthropods
Both fungi and animals store glucose as glycogen
Term
Hyphae may have more than one nucleus
Definition
Monokaryotic – 1 nucleus
Dikaryotic – 2 nuclei
Term
Fungi have an unusual mitosis
Definition
Cell is not relevant unit of reproduction
Nuclear envelope does not break down and re-form
Instead, the spindle apparatus is formed within it
Term
Fungi lack
Definition
centrioles (except in chytrids)
Term
Fungi reproduction
Definition
Capable of both sexual and asexual reproduction
Term
Fungi Sexual reproduction
Definition
Fusion of two haploid hyphae of compatible mating types
In some fungi, fusion immediately results in a diploid (2n) cell
Others, have a dikaryon stage (1n + 1n) before parental nuclei form diploid nucleus
Term
______ are the most common means of reproduction among fungi
May form from sexual or asexual processes
Most are dispersed by wind or insects
Definition
spores
Term
Fungi obtain food by
Definition
Obtain food by secreting digestive enzymes into surroundings
Then absorb the organic molecules produced by this external digestion
Great surface area-to-volume ratio
Term
Fungi can break down
Definition
cellulose and lignin
Term
Fungi, together with bacteria,
Definition
are the principal decomposers in the biosphere
Term
Obligate symbiosis
Definition
essential for fungus survival
Term
Facultative symbiosis
Definition
nonessential for survival
Term
Pathogen
Definition
pathogens harm host by causing disease
Term
Commensal relationships
Definition
benefit one partner but does not harm the other
Term
Mutualistic relationships
Definition
benefit both partners
Term
Parasites
Definition
cause harm to host (do not cause disease)
Term
Endophytic Fungi
Definition
Live in the intercellular spaces inside plants
Some parasitic, some commensalistic
Some fungi protect their hosts from herbivores by producing toxins
Term
Lichens
Definition
Symbiotic associations between a fungus and a photosynthetic partner
Term
most lichens are
Definition
mutualistic
Term
Fungi in lichens are
Definition
unable to grow normally without their photosynthetic partners
Term
Mycorrhizae
Definition
Mutualistic relationships between fungi and plants
Found on the roots of about 90% of all known vascular plant species
Function as extensions of root system
Increase soil contact and absorption of nitrogen, phosphorus and race elements
Term
Two principal types of mycorrhizae
Definition
Arbuscular mycorrhizae
Ectomycorrhizae
Term
Arbuscular Mycorrhizae
Definition
By far the most common
Fungal partners are glomeromycetes
No aboveground fruiting structures
Possibly helped early vascular plants survive infertile soils
Term
Ectomycorrhizae
Definition
Most hosts are forest trees (pines, oaks)
Fungal partners are mostly basidiomycetes
Term
Animal Mutual Symbioses
Definition
Ruminant animals host fungi in their gut that can degrade cellulose and lignin
Leaf-cutter ants have domesticated fungi which they keep in underground gardens
Ants provide fungi with leaves
Fungi are food for the ants
Term
Fungi may secrete substances making food unpalatable, carcinogenic, or poisonous for example
Definition
Aspergillus flavus – aflatoxin
Ustilago maydis – edible corn smut (not harmful to animals)
Term
Fungi also cause human and animal diseases such as
Definition
Candida – thrush; vaginal infections
Ringworm, athlete’s foot, and nail fungus
Term
Chytridiomycosis
Definition
Responsible for the worldwide decline in amphibian populations
Term
Batrachochytrium dendrobatidis causes
Definition
chytridiomycosis
Term
7 monophyletic phyla
Definition
Microsporidia
Blastocladiomycota
Neocallimastigomycota
Chytridiomycota
Glomeromycota
Basidiomycota
Ascomycota
Term
1 phylum that is not monophyletic
Definition
Zygomycota
Term
Microsporidia
Definition
Obligate, intracellular, animal parasites
Long thought to be protists
Lack mitochondria
Have reduced mitochondrion-like organelles
Term
Polar Tube of Microsporidians
Definition
Commonly cause disease in immunosuppressed patients
Infect hosts with their spores, which contain a polar tube
Term
Chytridiomycota
Definition
Aquatic, flagellated fungi
Closely related to ancestral fungi
Have motile zoospores
Term
Blastocladiomycetes
Definition
Alternation of generations- only fungi that do so
Term
Allomyces example
Definition
Grows in the soil
Both diploid and haploid stages are multicellular
Term
Sporophyte (2n) –
Definition
Spore producing via meiosis for haploid spores
Mitosis used to produce diploid spores for asexual cycle
Term
Gametophyte (n) -
Definition
gamete producing via mitosis
Term
Neocallimastigomycota
Definition
Digest plant biomass in mammalian herbivore rumens
Mammal depends on fungi for sufficient calories
Lack true mitochondria
Horizontal gene transfer brought cellulase gene from bacteria into Neocallimastix genome
Potential use for biofuel production- degrade cellulose at high temperatures
Term
Zygomycota
Definition
are not monophyletic – still under research
Include the common bread molds, a few human pathogens
Mostly coenocytic hyphae
Chemotropic hyphae are attracted to opposite type in unfavorable conditions for sexual reproduction cycle
Term
Life Cycle of Zygomycetes
Sexual reproduction
Definition
Fusion of gametangia
Haploid nuclei fuse to form diploid zygote nuclei – karyogamy
Develops into zygosporangium in which zygospore develops
Meiosis occurs during germination of zygospore
Releases haploid spores
Term
Asexual reproduction of zygomycetes
Definition
more common
Sporangiophores have sporangia that release spores
Term
Glomeromycetes are a
Definition
tiny group of fungi
Form intracellular associations with plant roots called arbuscular mycorrhizae
Cannot survive in absence of host plant
No evidence of sexual reproduction
Likely instrumental in colonization of land by plants
Term
Basidiomycetes
Definition
are some of the most familiar fungi
Mushrooms, toadstools, puffballs, shelf fungi, etc.
Also important plant pathogens like rusts and smuts
Term
Named for basidium –
Definition
club-shaped sexual reproductive structure
Term
Spore germination leads to
Definition
the production of monokaryotic hyphae
Results in a monokaryotic mycelium, or primary mycelium
Term
Different mating types of monokaryotic hyphae may fuse
Results in a
Definition
dikaryotic mycelium, or secondary mycelium
Term
Ascomycota
Definition
Contain about 75% of the known fungi
Includes bread yeasts, common molds, cup fungi, truffles, and morels
Serious plant pathogens – cause of chestnut blight and Dutch elm disease
Term
Penicillin-
Definition
producing fungi are in the genus Penicillium
Term
Conidia formed at the ends of modified hyphae called
Definition
conidiophores
Allow for the rapid colonization of a new food source
Many conidia are multinucleate
Term
Ascomycetes named for ascus –
Definition
microscopic, saclike reproductive structure
Term
Yeast
Definition
Unicellular ascomycetes
Most reproduce asexually by budding
Yeasts can ferment carbohydrates
Break down glucose into ethanol and C O2
Used to make bread, beer, and wine
Saccharomyces cerevisiae
Term
Yeast can ferment simple sugars
Likely a response to
Definition
competition with other microorganisms (bacteria)
Term
Yeast can ferment sugar in the absence of oxygen having an advantage
Definition
over those organisms that need oxygen as the final electron acceptor
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