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BIOL 1B
Midterm 2
174
Biology
Undergraduate 2
10/13/2013

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Term
One of the most prominent features of the bacteria and archaea is their:
Definition
Diversity
Term
Bacteria have BLANK bonds in lipid membranes
Definition
Ester
Term
Archaea have BLANK bonds in lipid membranes
Definition
Heat-resistant ether
Term
Features in common with eukaryotes (3)
Definition
Histone protiens, Ribosomal protiens, and RNA polymerases
Term
BLANK and Eukarya have common ancestry
Definition
Archaea
Term
Halophiles can live in environments with:
Definition
High salt content
Term
Extremophiles can exist in environments with: (4)
Definition
High salt content, Acidity, High methane levels and high temperatures
Term
Which is more diverse: Archaea or bacteria?
Definition
Bacteria
Term
The only bacteria to generate oxygen as a product of photosynethesis
Definition
Cyanobacteria
Term
Cyanobacteria gave rise to BLANK of modern eukaryotic algae and plants
Definition
Plastids
Term
Cyanobacteria are named for
Definition
Their blue/green "cyan" color
Term
Are cyanobacteria unicellular or multicellular?
Definition
Both
Term
Characteristics of protists: (2)
Definition
Mostly microscopic and live in moist habitats
Term
Earth's first Eukaryotes
Definition
Protists
Term
Protozoa
Definition
Heterotrophic protists
Term
Plankton
Definition
Protists in seawater
Term
Protists are common in: (3)
Definition
Lakes, oceans and rivers
Term
The structure of plankton is primarily:
Definition
Single cells, colonies or short filaments
Term
Periphyton
Definition
Communities of microorganisms attached by mucilage to underwater surfaces
Term
Periphyton produce
Definition
Multicellular bodies including seaweeds and macroalgae
Term
Types of protist motility: (4)
Definition
Cilia, flagella, pseudopodia, gliding on slime
Term
Are protists monophyletic?
Definition
NO
Term
Eukaryotic supergroups: (7)
Definition
Excavata, Land plants and their relatives, Alveolata, Stramenopila, Rhizaria, Amoebozoa, Opisthokonta
Term
Distinctive feature of Excavata
Definition
A feeding groove that takes in food via phagotrophy
Term
Flagella are composed of:
Definition
The motor protien dynein and microtubules
Term
How do eukaryotic flagella move?
Definition
Rapidly bend and straighten
Term
Examples of Excavata
Definition
Trichomonas vaginalis and Giardia intestinalis
Term
Are Excavata unicellular, multicellular or both?
Definition
Unicellular
Term
Studying the genomes of T. vaginalis and G. intestinalis concluded that...
Definition
Trichomonas has a more complex genome due to its transition to the vagina as a habitat. Also horizontal transfer played a large role in the development of the genomes of both.
Term
Do excavates have mitochondria
Definition
Yes, complex ones
Term
Euglenozoans are part of which supergroup?
Definition
Excavata
Term
Kinetoplasts are part of which supergroup?
Definition
Excavata
Term
Unique characteristic of Euglenozoans
Definition
Possess interlocking ribbon-like protein strips beneath the plasma membrane for crawling
Term
Unique characteristic of Kinetoplasts
Definition
Possess a kinetoplast, which is a large mass of DNA in the single mitochondria
Term
Examples of Kinetoplasts
Definition
Leishmania and Trypanosoma brucei
Term
Supergroup of land plants and relatives includes which protists?
Definition
Green and red algae
Term
Red algae lack BLANK
Definition
A flagellated life stage
Term
Organisms that possess primary plastids
Definition
Green and red algae, as well as plants
Term
Organisms that include secondary plastids
Definition
Crytomonads and Haptophytes
Term
Unique feature of Haptophytes
Definition
A covering of calcium carbonate coccoliths
Term
Unique characteristic of the supergroup Alveolata
Definition
Saclike membranous vesicles present in cell periphery
Term
Alveolata includes which 3 groups?
Definition
Ciliaphora, Apicomplexa and Dinozoa
Term
Dinoflagellates have BLANK plastids
Definition
Secondary or tertiary
Term
Dinoflagellates form mutualistic relationships with:
Definition
Corals
Term
Are dinoflagellates autotrophic or heterotrophic?
Definition
Half & half
Term
Examples of Apicomplexa
Definition
Plasmodium and Cryptosporidium parvum
Term
Unique characteristic of Stramenopila
Definition
Strawlike hairs on the surface of flagella
Term
Supergroup that includes a wide range of algae, protozoa, and fungus-like protists
Definition
Stramenopila
Term
Stramenopila includes:
Definition
Brown algae and diatoms
Term
Unique characteristic of Rhizaria
Definition
Thin, hair-like extensions of the cytoplasm called filose pseudopodia
Term
Filose pseudopodia
Definition
Thin, hair-like extensions of the cytoplasm characteristic of Rhizaria
Term
Rhizaria includes: (3)
Definition
Chlorarachniophyta, Radiolaria, and Foraminiferia
Term
Slime molds response to starvation:
Definition
Aggregation into a multicellular "slug" that produces spores in favorable conditions
Term
Dictyostelium discoideum is a model organism for understanding:
Definition
The supergroup Amoebozoa
Term
Unique characteristic of the supergroup Opisthokonta
Definition
Single posterior flagellum on swimming cells
Term
Opisthokonta includes:
Definition
Animal and fungal kingdoms and related protists (Nuclearia and Choanomonads)
Term
BLANK has a calcium carbonate shell that is used to tell past climate conditions
Definition
Foraminifera
Term
Choanomonads
Definition
"Collared cells" in the supergroup Opisthokonta, closely related to animals
Term
Four basic types of nutrition in protists:
Definition
Photoautotrophy, heterotrophy, osmotrophy, and mixotrophy
Term
Osmotrophy
Definition
The uptake of small organic molecules across the cell membrane
Term
Dinobryon (organism)
Definition
Photosynthetic stramenopile, which also consumes bacteria (mixotrophic)
Term
Slimy mucilage and spiny cell walls protect against
Definition
Herbivores and pathogens
Term
Types of food storage molecules used by protists:
Definition
Starch, polysacchrides and oil
Term
Cellulose or silica coverings prevent BLANK and allow BLANK
Definition
Osmotic damage, flotation
Term
Extrusomes
Definition
Ejectable spear-like defenses
Term
Dinoflagella defenses: (2)
Definition
Light flashes and toxins
Term
Results of Burkholder's research on dinoflagellates:
Definition
Both strains of the dinoflagellate Pfiesteria are toxic to mammalian cells
Term
All protists can reproduce BLANK
Definition
Asexually
Term
Many protists produce BLANK to remain dormant during bad conditions
Definition
Cysts
Term
Parasitic hosts use cysts to:
Definition
Travel to/from hosts
Term
Most unicellular sexually reproducing protists have BLANK life cycles
Definition
Zygotic
Term
2n part of the zygotic life cycle
Definition
Zygote
Term
Many multicellular green and brown algae have a BLANK life cycle
Definition
Sporic (alteration of generations)
Term
Possess 3 multicellular generations
Definition
Red Algae
Term
Life cycle that involves + and - mating strains
Definition
Zygotic
Term
Distinct characteristic of the gametic life cycle
Definition
All cells except the gametes are diploid
Term
Organisms with a gametic life cycle
Definition
Diatoms and animals
Term
Ciliates reproduce via:
Definition
Conjugation
Term
Role of macronuclei
Definition
Source of information for everyday cellular function
Term
Fungi are part of which supergroup?
Definition
Opisthokonta?
Term
Similarities between fungi and animals: (3)
Definition
Heterotrophic, both use absorptive nutrition, and both store surplus food as glycogen
Term
Absorptive nutrition
Definition
secreting enzymes and absorbing small organic molecules
Term
Plasma membranes contain BLANK instead of cholesterol
Definition
Ergosterol
Term
Fungi contain:
Definition
a nucleus, mitochondria and 80s ribosomes
Term
Fungi have relatively simple BLANK and a wide range of BLANK
Definition
Nutritional requirements, growth rates
Term
Are fungi unicellular, multicellular or both?
Definition
Both depending on the species
Term
Mycelium
Definition
The body of a fungi, composed of individual, branched filaments of hyphae
Term
Hyphae
Definition
Filaments that make up the mycelium of fungi
Term
Aseptate
Definition
Cells which are not partitioned by cell walls
Term
Early diverging fungi are BLANK and later diverging fungi are BLANK
Definition
Aseptate, septate
Term
Mushrooms are a type of BLANK
Definition
Fruiting body
Term
The fruiting bodies of fungi produce:
Definition
Spores
Term
Hyphae have BLANK surface area to BLANK
Definition
Large, increase absorption
Term
Fruiting bodies develop via:
Definition
Sexual reproduction of hyphae
Term
Fungi grow at:
Definition
The edges
Term
Ceonocytic
Definition
Aseptate
Term
Some hyphae are adapted to:
Definition
Trap and kill prey
Term
Fungi spores form via:
Definition
Asexual cloning OR sexual reproduction
Term
Conidia
Definition
Asexual spores grown at the tips of the hyphae
Term
Fungal food spoilage, allergies and diseases are caused by:
Definition
asexual fungi
Term
Aspergillus versicolor
Definition
Causes skin and lung infections in vulnerable patients (asexual fungi)
Term
Athlete's foot fungus and infectious yeast are:
Definition
Asexual fungi
Term
Budding
Definition
Asexual reproduction by some yeasts
Term
Fungi life-cycle is BLANK dominant
Definition
Haploid
Term
Gametes of most fungi are:
Definition
Cells from hyphal branches
Term
Gametes of fungi only differ:
Definition
Biochemically (mating types)
Term
Plasmogamy
Definition
Fusion of gametes' cytoplasm, which occurs with most sexual organisms
Term
Karygamy
Definition
Fusion of gametes' nuclei, following plasmogamy. Occurs with most sexual organisms.
Term
After plasmogamy in fungi:
Definition
Karygamy does not occur for some time; the nuclei remain seperate for a long time
Term
Dikarytotic
Definition
A cell which contains 2 nuclei, one from each parent
Term
Mycelium contains BLANK nuclei
Definition
Two. Mycelium is dikaryotic and funtionally diploid.
Term
Are the cells of fruiting bodies homokaryotic or dikaryotic?
Definition
Dikaryotic until nuclei fuse at maturity and form the zygote
Term
Do fruiting bodies undergo mitosis or meiosis to form spores?
Definition
Meiosis
Term
Fungi spores are dispersed via:
Definition
Wind, rain or animals
Term
Toxins and hallucinogenic substances
Definition
Substances which fungi produce in the fruiting body to deter consumption
Term
Fungal phyla: (7)
Definition
Cryptomycota, chytridomycota, microsporidia, zygomycota, arbuscular mycorrhizal (AM) fungi, ascomycota, and basidiomycota
Term
Earliest diverging phyla of fungi
Definition
Cryptomycota
Term
Cryptomycota lack:
Definition
Chitin in their cell wall
Term
Cryptomycota grow in:
Definition
Water AND soil
Term
Life phases of cryptomycota:
Definition
Cells with a singular flagellum and nonflagellate cells that attach to diatoms
Term
Are cryptomycota unicellular or multicellular?
Definition
Unicellular
Term
Chytrids live in
Definition
Water or moist soil
Term
Ecological role of chytrids:
Definition
Decomposers or parasites or pathogens
Term
Unique characteristic of Microsporidia:
Definition
Very small and occurrence as single-celled spores
Term
Ecological role of Microsporidia:
Definition
Pathogens
Term
Nosema ceranae
Definition
Microsporidia that is linked to honeybee colony collapse disorder
Term
Ecological role of zygomycota:
Definition
Mostly decomposers, but also some parasites
Term
IS the mycelium of Zygomycota septate or aseptate?
Definition
Aseptate
Term
Unique characteristic of Zygomycota:
Definition
Presence of sporangia and zygospores
Term
Gametangia
Definition
Present in zygomycota, a cell in which the zygote forms
Term
Development of a zygospore:
Definition
Gametangia of compatible mating types fuse, producing a zygosporangium in which a multinucleate zygospore matures in
Term
Development of the spores of zygomycota:
Definition
Haploid nuclei fuse into diploid nuclei, which undergo meiosis to become haploid spores
Term
Do AM Fungi have aseptate or septate hyphae?
Definition
Aseptate
Term
AM Fungi reproduce:
Definition
Asexually with large multinucleate spores
Term
Distinctive feature of AM Fungi
Definition
Live with plant partners
Term
Are the hyphae of Ascomycota septate or aseptate?
Definition
Septate
Term
Unique feature of Ascomycota
Definition
Sporangia called asci, which develop on ascocarps, produce sexual ascospores
Term
Ecological role of Ascomycota
Definition
Decomposers and plant pathogens
Term
Are basidiomycota hyphae septate or aseptate?
Definition
Septate with complex pores
Term
Basidia
Definition
Club-shaped cells of gruiting bodies that produce sexual spores
Term
Basidiospores
Definition
The sexual spores of Basidiomycota
Term
Most recently diverged groups of fungi: (2)
Definition
Ascomycota and Basidiomycota
Term
Basidiocarps
Definition
Fruiting bodies of Basidiomycota
Term
Clamp connections
Definition
Hyphal structures that help distribute nuclei during cell division
Term
Only certain bacteria and fungi can breakdown BLANK
Definition
Cellulose and lignin
Term
Fungi's ecological role:
Definition
As a decomposer, releases minerals to the soil and water
Term
Fungi keep the populations of:
Definition
Nematodes and some insects
Term
Fungal pathogens affect:
Definition
Humans, animals and crops
Term
Example of a common fungal pathogen:
Definition
Wheat rust
Term
Coccidiomycosis
Definition
Valley Fever, caused by an ascomycote fungus which is potentially fatal and endemic to the San Joaquin Valley
Term
Dimorphic fungi
Definition
Live as spore-producing hyphae in the soil, but when their spores are inhaled by mammals, the host body's temperature triggers the fungus transform into pathogenic yeasts
Term
Beneficial associations with photosynthetic partners: (3)
Definition
Mycorrhizal fungi, endophytes and lichens
Term
Endomycorrhizae
Definition
Fungal hyphae penetrate the spaces between root cell walls and plasma membranes and grow along the outer surface of the plasma membrane
Term
Ectomycorrhizae
Definition
Coat root surface and grow between cells of roots
Term
Benefit of endophytes to plant hosts:
Definition
Toxins or antibiotics that deter foraging animals, insect pests and microbial pathogens
Term
Endophytes live on:
Definition
The leaf and stem tissue of various plants
Term
Lichens are a partnership of:
Definition
Fungi and green algae and/or cyanobacteria
Term
Uses of fungi:
Definition
Convert compounds into citric acid, glycerol and antibiotics
Term
Systematics
Definition
Study of biological diversity and the evolutionary relationships among organisms
Term
Hypotheses regarding evolutionary relationships derived from systematics result in:
Definition
Taxonomic groups
Term
Clade
Definition
Monophyletic group; group of species consisting of the most recent common ancestor and all of its descendents
Term
Paraphyletic group
Definition
Contains a common ancestor and some, BUT NOT ALL, of its descendents
Term
Polyphyletic group
Definition
Contains more than one ancestor and their descendents
Term
Genes can be homologous if:
Definition
They are derived (changed) from the same gene
Term
Molecular systematics
Definition
Analysis of DNA and amino acid sequences to test phylogenetic hypotheses
Term
Cladistics
Definition
Study and classification of species based on evolutionary relationships
Term
Symplesiomorphy
Definition
Shared primitive character; shared by 2+ taxa and inherited from ancestors older than their last common ancestor
Term
Synapomorphy
Definition
Shared derived character; from most recent common ancestor
Term
Branch point/node
Definition
Where two species differ in shared derived characters
Term
5 steps to constructing a phylogenetic tree:
Definition
1. Choose a species or taxa 2. Gather data 3. Choose an outgroup as a root 4. Analyze data and resolve cladograms 5. Choose the most likely cladogram
Term
Polarity of events
Definition
Which events occurred first; Not always obvious in evolution
Term
Mechanism to measure evolutionary time:
Definition
Rate of neutral mutations
Term
Cytochrome oxidase subunit II
Definition
DNA sequence used to analyze evolutionary relationships of primates
Term
Vertical evolution
Definition
Normal evolution
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