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Biochem Exam II-Enzymes and Regulatory Metabolic Molecules
i love memorizing molecular pathways
18
Biology
Graduate
09/12/2009

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Term
Phosphofructokinase -1 (PFK-1)
Definition
catalyzes the phosphorylation of fructose-6-phosphate to fructose 1,6-bisphosphate. PFK-1 is the key enzyme that sets the pace of glycolysis, the rate-limiting step of the pathway.

PFK-1 is inhibited allosterically by ATP and citrate, but conversely activated by AMP. Super-regulator for PFK-1 is 2,6-bisphosphate, the most potent activator which overrides the ATP inhibition.

PFK-1 is a sensor for the energy charge state of the cell.
PFK-1 is also inhibited by high [H+], which is generated from the production of pyruvate and lactate. This inhibition stops the continuous production of lactate and consequent acidosis.
Term
Hexokinase/glucokinase
Definition
Phosphorylation of glucose during glyoclysis. In liver mainly glucokinase.
Term
citrate
Definition
Citrate regulation ensures that the cell will have a preference for fatty acids being utilized as fuel which is energetically more favorable.

Citrate increases the F-1,6 bisphosphatase activity which counteracts the inhibition by F-2,6 bisphosphate. The result is favorable for gluconeognesis.
Term
Fructose 2,6-bisphosphate
Definition
PFK-1 is activated by fructose 2,6-bisphosphate, the most potent activator which overrides the ATP inhibition.

not an intermediate in metabolism but a super regulator in control of glycolysis and gluconeogensis to ensure their reciprocal control.

High concentration of [F-2,6-BP] activates glycolysis by stimulating PFK-1 activity. At the same time high [F2.6-BP] inhibits the activity of fructose-1,6 bisphosphatase, a reversible step in gluconeogensis
Term
PFK-2
Definition
Catalyzes conversion of F-6P->F-2,6-BP

Has kinase domain to synthesize F-2,6-BP and a phosphatase domain to hydrolyze F-2,6-BP.

PFK-2 activity regulated by protein kinase A. When phosphorylated, PFK2 phosphatase activity active and when dephosphorylated, the kinase activity is turned on.
Term
glucagon
Definition
activates protein kinase A which in turn inhibits
the production of F 2,6-BP by phosphorylation of the kinase domain of PFK-2.

Protein kinase A will phosphorylate and activate many other metabolic enzymes.
Term
dihydroxyacetone phosphate
Definition
DHAP is converted to glycerol 3-phosphate which is needed for triacylglycerol synthesis.
Term
gluconeogenesis
Definition
F-2,6-BP is inhibited by phosphorylation of PK2 by protein kinase A.

Glycerol is converted to glyceraldehyde-3-phosphate by glycerol kinase and glycolysis pathway can be pushed backwards to create glucose.
Term
Significance of 1,3-BPG
Definition
Can be converted to 2,3-BPG which binds Hb and facilitates oxygen release.
Term
phosphoglycerate kinase
Definition
substrate level phosphorylation by conversion of 1,3-BPG->3-PG
Term
Pyruvate kinase
Definition
Substrate level phosphorylation during conversion of phosphoenolpyruvate ->pyruvate

Pyruvate kinase is tightly regulated since it controls the the outflow of the glycolytic pathway. The activity is regulated via protein phosphorylation by cAMP protein kinase A activated by glucagon. It plays a role in cancer cell metabolism which favors glycolysis and anaerobic lactate production for energy.
Term
Insulin
Definition
activates phosphoprotein phosphatase activities that dephosphorylate enzymes, which in turn causes activation of glycolysis.
Term
Products formed from pyruvate following glycolysis
Definition
acetaldehyde->ethanol (yeast)
lactate
acetyl coA
Alanine
Oxaloacetate
Term
lactate dehydrogenase
Definition
converts pyruvate to lactase while replenishing supply of NAD+

Humans have two different types of LDH subunits, the M type and the H type, which form five tetrameric isomers. The LDH isozymes concentration in plasma is a diagnostic tool for tissue damages.
Term
Transaminase
Definition
catalyzes pyruvate-> alanine
Term
Pyruvate carboxylase
Definition
catalyzes pyruvate->oxaloacetate
Term
Galactose-1-phosphate uridyl transferase
Definition
converts Gal-1-P to UDP-galactose which is converted to UDP-glucose which enters glycolysis as G-1-P
Term
Aldolase B
Definition
fructose-1-P -> glyceraldehyde/dihydroxyacetone P

Enables fructose to enter at stage 2 of glycolysis
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