Shared Flashcard Set

Details

Bio 17
From Gene to Protein
86
Biology
Undergraduate 1
10/25/2012

Additional Biology Flashcards

 


 

Cards

Term
Gene Expression
Definition
The process of translating genetic code into a specific order of amino acids to build a polypeptide.
Term
How many amino acids are there?
Definition
20
Term
Does the number of amino acids limit the number of proteins that can be made?
Definition
No, they are similar to the alphabet in their ability to be arranged in seemingly endless combinations.
Term
The two stages involved in the coding of proteins are:
Definition
transcription and translation
Term
Transcription mostly results in what kind of molecule?
Definition
Messenger RNA (mRNA)
Term
mRNA
Definition
An RNA molecule that carries the genetic code from DNA to the ribosomes.
Term
Where does transcription occur?
Definition
In the nucleus.
Term
Translation
Definition
The "translation" of genetic information of mRNA into amino acids to form a  polypeptide.
Term
What results from translation?
Definition
The forming of a protein or an enzyme.
Term
What is the difference between polypeptides and proteins?
Definition
Polypeptides make up DNA, they are unfolded, and non-functional. Proteins are comprised of at least one polypeptide, they are folded, and functional.
Term
Where does translation happen?
Definition
In the cytosol.
Term
What enzyme performs transcription?
Definition
RNA Polymerase II
Term
Template Strand
Definition
The DNA strand that provides the pattern for transcription.
Term
Are both DNA strands template strands?
Definition
No, just one.
Term
What does DNA Polymerase II do first in transcription?
Definition
It unwinds and copies the template strand into complimentary mRNA
Term
How is the mRNA strand different from the template strand it was copied from?
Definition
The nucleotides it adds are complimentary base pairs, with the exception that T's become U's, and it runs in the anti-parallel direction.
Term
What nitrogenous base is replaced in transcription and what is it replaced with?
Definition
DNA's Thymine is replaced with mRNA's Uracil.
Term
Promoter
Definition
The DNA sequence where RNA Polymerase II attaches and initiates transcription.
Term
In what direction does RNA Polymerase II read the template strand?
Definition
3' to 5'
Term
In what direction does RNA Polymerase II write mRNA?
Definition
5' to 3'
Term
Can only one RNA Polymerase II function at a time.
Definition
No, multiple RNA Polymerase II's can function at the same time on one gene.
Term
How does RNA Polymerase II attach to the promoter in Prokaryotes?
Definition
They attach correctly without any help.
Term
Transcription Factors
Definition
A collection of proteins that mediates the binding of RNA Polymerase II to the the template strand.
Term
TATA Box
Definition
A DNA sequence in the promoter that Transcription Factors "recognize" and bind to in the promoter region so that RNA Polymerase II may attach.
Term
What results from Transcription?
Definition
Pre-mRNA in Eukaryotes, RNA transcript in Prokaryotes.
Term
True or false: Prokaryotic cells require RNA processing before the mRNA enters the cytoplasm.
Definition
False: Eukeryotic cells require RNA Processing, not Prokaryotes.
Term
RNA Processing
Definition
The modification of the ends of the pre-mRNA molecule by enzymes.
Term
5' cap
Definition
A modified guanine nucleotide with 2 more phosphates added to the 5' end of mRNA
Term
poly-A tail
Definition
50-250 Adenine nucleotides added to the 3' end of mRNA
Term
What are the functions of RNA processing?
Definition
-To help safely export the mRNA from the nucleus.
- Protect mRNA from hydrolytic enzymes in cytoplasm.
- Help attach 5' to the ribosomes.
Term
RNA Splicing
Definition
The video-editing like cut-and-paste job of mRNA.
Term
Why do segments of mRNA have to be removed?
Definition
Because there are too many pairs of nucleotides in DNA than are required to make the amino acid sequence of a protein.
Term
In what kind of cells does RNA splicing happen?
Definition
Eukaryotes.
Term
Introns
Definition
Non-coding codons regions that are removed.
Term
Exons
Definition
Codons of mRNA that are spliced together.
Term
What do exons code for?
Definition
Amino acids.
Term
UTR
Definition
Untranslated regions of a gene that remain in mRNA.
Term
What do UTR's do?
Definition
They help in ribosome binding.
Term
What performs RNA splicing?
Definition
Spiceosomes.
Term
Spliceosomes
Definition
Molecular complexes that cut out introns and splice together exons.
Term
What are Spliceosomes made of?
Definition
RNA and proteins.
Term
Alternative RNA Splicing
Definition
An alternative method of RNA Splicing where different segments are treated as exons.
Term
What is another term used to understand Alternative RNA Splicing?
Definition
Exon shuffling.
Term
What is the use of introns in Alternative RNA splicing?
Definition
So that the order of amino acids may be changed to create a variety of proteins from one gene.
Term
________ is transformed into ____________ during Translation.
Definition
mRNA is transformed into polypeptides during Translation.
Term
Transfer RNA (tRNA)
Definition
Is a folded, single stranded RNA molecule that transports specific amino acids to mRNA in the ribosome.
Term
Anticodon
Definition
Triplet of bases complimentary to mRNA on the tRNA that attaches to the codon
Term
True or false: every tRNA molecule is like the others.
Definition
False: tRNA molecule codes for a specific amino acid.
Term
Wobble
Definition
How some tRNA molecules can bind to codons with different third bases and still code for the same amino acid.
Term
True or false: There is an tRNA molecule specific to each codon's triplet base sequence.
Definition
False: Wobble allows for one tRNA molecule to bind with a codon with a different third base and still create the same amino acid.
Term
In regards to wobble, the third base in question in the codon is at the ___ end while the anticodon concerns the third base at the ___ end.
Definition
3' end, 5' end
Term
Start codon
Definition
The AUG codon that initiates translation and codes for the amino acid methionine.
Term
True or false: codons are read with gaps between them.
Definition
False: codons are read continuously.
Term
True or false: genetic coding is not nearly universal among all life on Earth
Definition
False: Genetic coding is nearly universal among all life on Earth.
Term
Ribosomes
Definition
The sites of polypeptide synthesis that function as enzymes.
Term
The composition of ribosomes
Definition
A large and small subunit, composed of proteins and ribosomal RNA (rRNA)
Term
Where are the subunits of ribosomes assembled?
Definition
In the nucleolus.
Term
How does the large ribosomal subunit attach?
Definition
With energy from Guanosine Triphosphate (GTP).
Term
To what end of the growing polypeptide are amino acids added?
Definition
The carboxyl end.
Term
P site
Definition
The binding site in ribosomes that carries the polypeptide-bearing tRNA.
Term
A site
Definition
The binding site in ribosomes that carries the tRNA with the new amino acid to be added.
Term
E site
Definition
The binding site in ribosomes through which the tRNA without an amino acid exits the ribosome.
Term
In what direction do you read codons?
Definition
Left to right.
Term
Polyribosomes
Definition
Multiple ribosomes can translate mRNA simultaneously
Term
What are the two populations of ribosomes?
Definition
Free - those in the cytosol
Bound - those attached to the rough ER.
Term
What causes the transition from a free ribosome to a bound ribosome?
Definition
An amino acid sequence in the polypeptide that directs where the polypeptide will go.
Term
Is the process of translation often sufficient to make a functional protein?
Definition
No, it needs to be chemically modified.
Term
Where are proteins chemically modified to become functional?
Definition
The Rough ER and the Golgi apparatus.
Term
Mutation
Definition
Permanent change is a DNA sequence.
Term
In what direction does mRNA run through the ribosome?
Definition
5' to 3' (Threeword!)
Term
Point mutation
Definition
Mutation where only one base pair is altered.
Term
Substitution
Definition
A type of mutation in which one nucleotide is replaced with another.
Term
What are the types of substitution mutations?
Definition
Silent, missense and nonsense.
Term
Silent mutation
Definition
A substitution mutation in which there is no change in the amino acid sequence because the changed codon still codes for the same amino acid.
Term
Missense mutation
Definition
A type of substitution mutation in which the coded amino acid is changed.
Term
Nonsense mutation
Definition
A type of substitution mutation in which the codon becomes a stop codon, creating a non-functional, prematurely terminated protein.
Term
Insertions and deletions
Definition
Additions or losses of nucleotide pairs in a gene.
Term
Frameshift mutation
Definition
The alteration of the reading frame in the genetic message of the nucleotide triplets in mRNA as a result of insertion or deletion.
Term
When does a frameshift mutation occur?
Definition
When the number of nucleotides inserted or deleted are not multiples of three.
Term
Why are insertions and deletions so bad?
Definition
They change everything "downstream" of the insertion or deletion and cause the protein to be nonfunctional.
Term
How is tRNA held to mRNA?
Definition
By hydrogen bond between the codon and anticodon base pairs.
Term
Release Factor
Definition
A protein shaped like tRNA that binds to the A site to break the polypeptide from the ribosome.
Term
How does the Release Factor break the polypeptide from the ribosome?
Definition
By adding a water molecule (hydrolyzing the bond).
Term
What do proteins compose?
Definition
Enzyemes, hormones, hemoglobin, antibodies, glycocalyx, muscles, hair, etc.
Term
Gene
Definition
Specific nucleotide sequence coding for a polypeptide.
Term
Codon
Definition
Set of three nucleotides that codes for an amino acid.
Supporting users have an ad free experience!