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bio 111
quiz 2 exam 1
241
Biology
Undergraduate 1
09/16/2009

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Term
What is a eukaryotic cell?
Definition
a eukaryotic cell is a cell in which the DNA is an organelle called the nucleus which is bounded by a double membrane.
Term
What is a prokaryotic cell?
Definition
A prokaryotic cell is a cell thats DNA is concentrated in a region not inclosed by a membrane. This region is called the nucleoid.
Term
What is the interior of a prokaryotic cell called?
Definition
Cytoplasm
Term
What is the region between the nucleus and plasma membrane of an eukaryotic cell called?
Definition
cytoplasm
Term
Define plasma membrane.
Definition
The plasma membrane functions as a selective barrier that allows sufficient passage of oxygen, nutrients, and wastes to service the entire cell.
Term
What is the nucleus?
Definition
The nucleus contains most of the genes in a eukaryotic cell.  It is usually the largest organelle in a eukaryotic cell.
Term
What is the nuclear envelope?
Definition
the nuclear envelope encloses the nucleus.
Term
What is the nuuclear lamina?
Definition
The nuclear lamina is between the nucleus and nuclear envelope, it is a netlike array of protien filaments that maintains the shape of the nucleus by mechanically supporting the nuclear envelope.
Term
What are chromosomes?
Definition
Structures that carry the genetic information.
Term
What is each chromosome made up of?
Definition
chromatin
Term
What is the nucleolus?
Definition
The nucleolus is where rRNA is manufactured from instructions by the DNA
Term
What are ribosomes?
Definition
Ribosomes are made of rRNA and protien and are the cellular components that carry out protien synthesis.
Term
What is the endomembrnae system?
Definition
A system of membranes that carry out various functions such as protien synthesis, transport into membranes, metabolism and detox of poisons.
Term
What are vesicles?
Definition
Sacs made of membrane.
Term
What is endoplasmic reticulum (ER)?
Definition
ER is an extensive network of membranes that accounts for more than half the total membrane in many eukaryotic cells.
Term
What are the two types of ER?
Definition
Smooth ER and Rough ER
Term
What is smooth ER?
Definition
Smooth ER is called smooth Er because there are no ribosomes on the surface so it appears smooth.  Used in the synthesis of lipids, metabolism of carbohydrates, and detox of drugs and poisons.
Term
What is Rough ER?
Definition
Rough ER has ribosomes on the outside so under a microscope it appears rough.  Rough ER makes secretory protiens, is a membranes factory, and makes its own membrane phospholipids.
Term
Glycoprotiens are?
Definition
protiens that have carbohydrates covalently bonded to them.
Term
What is the Golgi Apparatus?
Definition
The warehouse of the cell the Golgi is where products of ER, like protiens, are modified, stored and sent to other destinations.
Term
What is a lyosome?
Definition
a membranous sac of hydrolytic enzymes that an animal cell uses to digest macromolecules.
Term
Phagocytosis is...
Definition
...the process in which amoebas and many other protists eat by engulfing smaller organisms or other food particles.
Term
What are contractile vacuole?
Definition
Many freshwater protists have contractile vacuole that pump excess water out of the cell thereby maintaining a suitable concentration of ions and molecules inside the cell.
Term
What is the central vacuole?
Definition
An integral part of the cell's endomembrane system.
Term
What are mitochondria?
Definition
Mitochondria are the sites of cellular respiration, the metabolic process that generates ATP by extracting energy from sugars, fats and other fuels with the help of oxygen.
Term
What are chloroplasts?
Definition
Chloroplasts are found in plant cells and are the sites of photosynthesis.  THey convert solar energy to chemical energy by absorbing sunlight and using it to drive the synthesis of organic compounds such as sugars from carbon dioxide and water.
Term
What are microtubules?
Definition
Microtubules are hollow rods constructed from a globular protien called tubulin. 
Term
What is the centrosome?
Definition
the centrosome in an animal cell is where the microtubules grow from.
Term
What are centrioles?
Definition
centrioles are found inside of the centrosome.  Before a cell divides the centrioles replicate.
Term
What is the cell wall?
Definition
The cell wall is only ffound in plant cells and distinguishes them from animal cells.  The wall protects the plant cell, maintains its shape and prevents excessive uptake of water.
Term
Primary cell wall is?
Definition
a relatively thin, flexible wall
Term
The middle lamella is?
Definition
a thin layer rich in sticky polysaccharides called pectins. 
Term
What is the extracellular matrix?
Definition
Animal cells do not have plant walls but they do have an extracellular matrix (ECM)
Term
What is collagen?
Definition
the most abundant glycoprotien in the ECM  of most animal cells
Term
What is active transport?
Definition
active transport is transport against the concentration gradient and this process must use energy.  the result is that the cell is different from the environment around it.
Term
Facilitated diffusion is?
Definition
facilitated diffusion is diffusion through a channel protien in a cell wall.
Term
What is a hypertonic solution?
Definition
a hypertonic solution is where the concentration of a solution is greater than the concentration in a cell and water leaves the cell to balance the concentration and the cells shrivels up
Term
What is a isotonic solution?
Definition
An isotonic solution is where the concentration of a solution in the same as the concentration of a cell and the cell is normal.
Term
What is a hypotonic solution?
Definition
A hypotonic solution is where the concentration of a solution is less than the concentration in a cell and the cell bursts.
Term
when does water potential increase?
Definition
water potential increases as the pressure of a solution increases.
Term
when does water potential decrease?
Definition
water potential decreases as the concentration of a solution increases
Term
What is osmosis?
Definition
diffusion of H2O across a semi permeable membrane from HI to LOW water potential
Term
What is diffusion of two solutes?
Definition
Energy/matter only respond to its own concentration gradient.
Term
What is diffusion of one solute?
Definition
net movement of energy/matter from an area of high concentration to an area of low concentration.
Term
What are the four types of transport through a cells membrane?
Definition

Diffusion

          -of one solute and of two solutes

Osmosis

Facilitated Diffusion

Active and Passive Transport

Term
Define Enzymatic Activity as it is related to the function of a cell membrane.
Definition
Enzymatic Activity - useful for metaboolic pathways where products of one reaction are substrates for another
Term
Define transport as it is related to the function of a cell membrane.
Definition
transport - selective regulated permeability
Term
the six functions of a cell membrane are?
Definition

1. transport

2. Enzymatic activity

3. Signal transduction

4. cell to cell recognition

5. intercellular joining

6. attachment to the cytoskeleton and extracellular matrix (ECM)

Term
the structure of a membrane is made of?
Definition
phospholipids
Term
What two things is energy used for?
Definition

1. to build protiens

2. replicate DNA and divide cells for reproduction

Term
after they cross the membrane energy and products are harvested. this means that they are...
Definition
metabolized
Term
define metabolism
Definition
the rate at which material that passes through the cell membrane is turned into energy and harvested.
Term
what is absorbed through the membrane of a cell?
Definition
material and energy
Term
material and energy is absorbed across the...
Definition
membrane
Term
What is energy?
Definition
energy is the capacity to cause change
Term
What are the two forms of energy?
Definition

kinetic energy

potential energy

Term
What is kinetic energy?
Definition

Kinetic = energy of a moving body

 

Term
What are the three types of kinetic energy?
Definition

thermal = energy of moving atoms

light = energy of moving photons

electricity = energy of moving charge

Term
What are the three kinds of potential energy?
Definition

potential kinetic (position)

potential electric (like in a battery)

chemical (energy that can be realsed by the breaking of chem bonds)

Term
What are the Laws of Thermodynamics?
Definition
Conservation of energy, Law of entropy
Term
What is the conservation of energy?
Definition
energy/matter can not be created or destroyed, but it can be transferred and transformed
Term
What is the law of entropy?
Definition
every entropy transformation increases the entropy of the universe.
Term
Cell Respiration with oxygen present = ?
Definition

Aerobic Resperation=

Gateway

CAC

ETC=

LOTS OF ATP

Term
cell respiration with oxygen absent?
Definition

anaerobic resp

fermentation=

a little ATP

Term
What is Glycolysis?
Definition
Glycolysis occurs in the presence or absence of oxygen gas and it occurs in the cytoplasm and all cells do it.
Term
What is anaerobic respiration?
Definition

in plants, fungi, and bacteria: Ethyl Alcohol Fermentation

in animals: Lactic Acid Fermentation

 

in both processes, NAD is recycled so glycolysis can continue

Term
What are the four steps of anaerobic respiration?
Definition

Glycolysis

Gateway

Citric Acid Cycle

Electron Transport Chain

 

Term
Define Evolution
Definition
the process of change that has transformed life on earth from its earliest beginings to the diversity of organisms living today.
Term
Define Biology.
Definition
The scientific study of life.
Term
What are emergent properties?
Definition
Properties that are not present at the preceding level of complexity.
Term
What is reductionism?
Definition
the reduction of complex systems to simpler components that are more manageable to study
Term
What are then ten levels of Biological Organization?
Definition

1. The Biosphere

2. Ecosystems

3. Communities

4. Populations

5. Organisms

6. Organs and Organ Systems

7. Tissues

8. Cells

9. Organelles

10. Molecules

Term
What are the two processes of ecosystem dynamics?
Definition

1. the cycling of nutrients

2. one-way flow of energy from sunlight to producers

Term
What is the molecular makeup of DNA?
Definition
Structuraly DNA is two long chains arranged in a double helix.  Each chain is linked with nocleotides.
Term
What is "high throughput" technology?
Definition
Tools that can analyze biological materials very rapidly and produce enormous amounts of data.
Term
What iss bioinformatics?
Definition
The use of computational tools to store, organize, and analyze the huge volume of data that comes from "high throughput" methods.
Term
What is negative feedback?
Definition
Negative feedback is a form of regulation in which accumulation of an end product of a process slows that process.
Term
What is positive feeback?
Definition
a regulation method in which the end product speeds up production. example is clotting blood from an injury.
Term
What is the core theme of biology?
Definition
evolution
Term
What are the eight categories for grouping species?
Definition
Domain, Kingdom, Phylum, Class, Order, Family, Genus, Species
Term
What are the three domains of life?
Definition
Bacteria, Archaea (both of these are prkaryotic), and Domain Eukaryotic
Term
What were the two main points of Charles Darwins book "The origin of Species?"
Definition

First main point was that similar species came from a succession of ancestors.  He called this "descent with modification".

His second point was natural selection.

Term
Explain in detail Darwin's theory of natural selection.
Definition
Darwins theory of natural selection can be explained through a bird.  You don't find birds that needs big nests in areas with small trees and shrubs.  Birds that soft seeds have softer beaks than birds that crack open sea shells.  The reason is that nature has gotten rid of the traits that did not fit that species in that area. 
Term
What is inductive reasoning?
Definition

the discovering of generalizations from a large group of observations.

example: we see the sun rise in the east everyday, therefore the sun rises in the east everyday

Term
What is deductive reasoning?
Definition
We take two observations and make another observation.  If all organisms are made of cells, and humans are organisms, then humans are made of cells.
Term
The continuity of life is based on?
Definition
Cell Division
Term
What happens when a unicellular organism divides?
Definition
Because it is unicellular the organism in a sense reproduces because it can only have one cell so the divided cell becomes its own organism.
Term
Cell divison is part of which cycle?
Definition
Th cell cycle.
Term
How long is the DNA in a typical human cell?
Definition
2 m long
Term
DNA Molecules are packed into what?
Definition
chromosomes
Term
What are somatic cells?
Definition
All cells that are not involved in reproduction.
Term
What are gametes?
Definition
sperm, egg and other reproductive cells.
Term
How many chromosomes does a somatic cell contain?
Definition
Each somatic cell contains 46 chromosomes, 23 from each parent.
Term
How many chromosomes do gametes have?
Definition
Gametes have half the cells because you get two gametes which means you get 23 from each to make the 46 for somatic cells,
Term
What are eukaryotic chromosomes made of?
Definition
Chromatin.
Term
Each duplicated chromosome has what associated with it?
Definition
Each duplicated chromosome has two sister chromatids.
Term
Chromatids are attached by what? What is this attachment called?
Definition
Chromatids are attached by proteins calle cohesions, and this attachment is called sister chromatid cohesion.
Term
The region where two chromatids are most closely attached is called?
Definition
The centromere.
Term
The centromere is what?
Definition
The centromere is the area where two sister chromatids are most closely attached.  The area to either sides are considered arms.
Term
Mitosis is?
Definition
Mitosis is the division of the nucleus.
Term
Cytokinesis is? And what does cytokinesis follow?
Definition
Cytokinesis is the division of the cytoplasm and it follows mitosis.
Term
What is a zygote?
Definition
A fertilized egg.
Term
What is meiosis?
Definition
Meiosis is the production of gametes, or reproductive cells. 
Term
What is the production of gametes called?
Definition
Meiosis.
Term
Why is meiosis different from mitosis?
Definition
Meiosis is the production of gametes that only have 23 chromosomes while mitosis is the reproduction of somatin cells that have 46 chromosomes.
Term
What is the Mitotic (M) phase?
Definition
The mitotic phase is the part of the cell cycle that includes mitosis and cytokinesis.  Mitotic phase is the shortest phase of the cycle and only takes up about 10% of the time.
Term
What are the two large phases of the cell cycle?
Definition
The mitotic phase and interphase.
Term
What happens during interphase?
Definition
the cell grows and copies chromosomes in prep for cell division
Term
What are the three phases of interphase?
Definition

G1 Phase (first gap), S Phase (synthesis) and the G2 Phase (second Gap)

 

Term
How is the S Phase different from the G1 and G2 phase?
Definition
the S Phase is the only phase where chromosomes are copied.
Term
How many stages are apart of the Mitotic Phase?
Definition

Five.

prophase, prometaphase, metaphase, anaphase and telophase

Term
When and where does the mitotis spindle form?
Definition
Forms in the cytoplasm during prophase.
Term
What is a kinetochore?
Definition
A structure of proteins associated with specific sections of chromosomal DNA at the centromere. 
Term
Describe G2 of interphase.
Definition

- a nuclear envelope bounds the nucleus

- the nucleus contains one or more nucleoli

- two centrosomes have formed by replication of a single centrosome

- in animal cells, each centrosome features two centrioles

- chromosomes, duplicated during the S phase, cannot be seen individually because thay have not yet condensed

Term
Desribe prophase.
Definition

- the chromatin fibers become mreo tightly coiled, condesing into discrete chromosomes observable with a light microscope.

- the nucleoli disappear

- each duplicated chromosome appears as two identical sister chromatids joined together at their centrmeres and all along their arms by cohesions (sister chromatid cohesion)

- the mitotic spindle begins to form. it is composed of the centrosomes and the microtubules that extend from them. the radial arrays of shorter microtubules  that extend from the centrosomes are called asters

- the centrosomes move away from each other, apparently propelled by the lengthening microtubules between them.

Term
Desribe Prometaphase.
Definition

- the nuclear envelope fragments

- the microtubules extending from each centrosome can now invade the nuclear area.

- the chromosomes have become even more condensed

- each of the two chromatids of each chromosome now has a kinetochore, a specialized protein structure located at the centromere

- some of the microtubules attach to the kinetochore, becoming "kinetochore microtubules"; these jerk the chromosomes back and forth.

- nonkinetochore microtubules interact with those from the opposite pole of the spindle

Term
Describe metaphase.
Definition

- longest stage of mitosis lasting about 20 min

- centrosomes are at opposite poles of the cell

- the chromosomes convene on the metaphase plate, an imaginary plane that is between the spindle's two poles. the chromosomes centromeres lie on the metaphase plate.

- for each chromosome, the kinetochores of the sister chromatids are attached to kinetochore microtubules coming from the opposite pole.

Term
Describe anaphase.
Definition

- shortest stage of mitosis lasting a few min.

- begins when the cohesion proteins are cleaved. this allows the two sister chromatids of each pair to break apart.  each chromatid becomes a real chromosome

- the new chromosomes begin moving away from their sister to opposite ends of the cell.  the kinetochore microtubules are attached at the centromere region  so they move centromere first.

- the cell elongates as the nonkinetochore microtubules lengthen

- by the end opf anaphase the two ends of the cell have each have a complete set of chromosomes

Term
Describe telophase.
Definition

- two daughter nuclei form in cell

- nuclear envelopes form

- nucleoli reappear

- chromosomes become less condensed

- mitosis is now complete

Term
What is binary fission?
Definition
asexual reproduction of single-celled eukaryotes
Term
What are organisms composed of?
Definition

matter

 

Term
Define matter.
Definition
anything that takes up space and has mass
Term
What is the atomic number?
Definition
The number of protons in an atom.
Term
Define isotope.
Definition
Isotopes are atoms that are the same atoms with different numbers of neutrons.
Term
What is potential energy and give an example?
Definition
potential energy is the energy that matter posses because of its location or structure.  Water in a resevoir on a hill has PE because of its altitude.
Term
Define covalent bond.
Definition
A covalent bond is the sharing of a pair of electrons by two atoms.
Term
What is electronegativity?
Definition
The more electronegative an atom is the more it pulls shard electrons to itself. 
Term
What would a chemical bond be called if there was no electronegativity?
Definition
A nonpolar covalent bond.
Term
If electronegativity is present in an atomic bond it is called?
Definition
A polar covalent bond.
Term
What is an ionic bond?
Definition
the transfer of an electron from one element to another.
Term
What are compounds formed by ions called?
Definition
Salts or ionic compounds.
Term
What is a hydrogen bond?
Definition
A hydrogen bond occurs when a hydrogen is covalently bonded to two other atoms. 
Term
Discuss the adhesion of water molecules.
Definition
Water molecules bond together because H2O is a polar molecule.  The Oxygen has a slight - charge while the hydrogen end has a + charge.  These charges allow the H2O molecules to bond together.
Term
Define adhesion.
Definition
Adhesion is the clinging of one sustance to another.  Adhesion of H2O to plant cell walls is an example. 
Term
Surface tension is?
Definition
Surface tension is a measure of how difficult it is to break the surface of a liquid.  This falls in place with cohesion.  If chesion is strong curface tension will be to because the molecules will be bonded together.
Term
what is a calorie?
Definition
a calorie is how much  heat it takes to raise the temp of 1 gram of water 1 degree C
Term
What is specific heat?
Definition
the amount of heat required to change the temp of 1 gram of water by 1 degree celcius
Term
What is heat of vaporization?
Definition
H of V is the amount of heat reqiured for 1 gram of a liquid to convert to the gaseous stage.
Term
What is a solution?
Definition
A solution is a completely homogenous mixture of two or more substances.
Term
The dissolving agent in a solution is the?
Definition
solvent
Term
Define solute.
Definition
Solute is the substance being dissolved in a soltuion.
Term
What are hydrophobic substances?
Definition
Substances that cannot form hydrogen bonds and repel water are hydrophobic.
Term
What is a hydrophilic substance?
Definition
A substance that has an affinity for water.
Term
A suspension of particles in a lquid is called a...
Definition
...colloid
Term
What is organic chemistry?
Definition
the chemical study of carbon compounds
Term
What is the difference between organic compounds and inorganic compounds?
Definition
Organic compounds are only found in living organisms and inorganic compounds are found only in the nonliving world.
Term
What is a Methane?
Definition
Methane is carbon with four single bonds in a tetrahedral molecule.  The formula would CH4
Term
What is ethane?
Definition
Ethane is two tetrahedral groups bonded together by the carbons and the formula is C2H6
Term
What is ethene?
Definition
Ethene is two carbons double bonded with atoms bonded to carbon in the same plane so that the molecule is flat. Formula is C2H4.
Term
What are isomers?
Definition
Isomers are compounds that have the same number of atoms of the same elements but different structures and different properties.
Term
What are structural isomers?
Definition
Structural isomers differ in how they share electrons and how they shape up.  One isomer could be a straight line and another be an "L" shaped molecule.
Term
What are Geometric Isomers?
Definition
Geometric isomers are isomers that vary around a double bond.  The two types of geographic isomers are cis isomers which have the varing element on the same side (top or bottom) and trans isomer which has one element on top and one on bottom.
Term
What are enantiomers?
Definition
Enantiomers are isomers that are mirror images of each other.  Just like a right handed glove and left handed one.
Term
What are the properties of a hydroxyl group?
Definition

- hydrogen bonded to a oxygen bonded to a carbon skeleton

- Called Alcohols

- polar because oxgen is electronegative

- forms hydrogen bonds with oxygens helping dissolve organic compounds like sugars.

Term
Define the properties of the carbonyl group.
Definition

- carbon joined to an oxygen by a double bond

- two names

       - ketones if attached to carbon skeleton

       - Aldehydes if the group is at the end of a carbon skeleton

- ketone and aldehyde may be structural isomers  with different properties

- found in sugars making two different groups of sugars

        - aldoses

        - ketoses

Term
Define the properties of a carboxyl group.
Definition

- an oxygen double bonded to a carbon that is also bonded to a OH

- called carboxylic acids or organic acids

- is a source of hydrogensbecause oxygen is so electronegative

- found in cells in the ionized form with a -1 charge and called a carboxylate ion

Term
Define the properties of the Amino Group.
Definition

- nitrogen bonded to two hydrogens and bonded to the carbon skeleton

- called amines

- acts as a base

- can pick up +H from surrounding solution (H2O)

- ionized with a charge of +1 under cellular conditions

Term
Define the properties of the sulfhydryl group.
Definition

- sulfur bonded to a hydrogen

- called thiols

- two sulfhydryl groups bond forming a covalent bond and it stabilizes protein strucutre

 

Term

Define the properties of a phosphate group.

 

Definition

- phosphate bonded to 4 oxygens; 1 oxygen bonded to carbon skeleton and 2 oxygens have - charges

- called organic phosphates

- -2 charge (as listed above) when at the end of a molecule but -1 charge when linked in a chain of phosphates

-has potential to react with H2O releasing energy

Term
Define properties of a methyl group.
Definition

- carbon bonded to 3 hydrogen atoms

- may be attached to carbon or different atom

- called methylated compounds

- when added to DNA it affects genes

- arrangement in male and female sex hormones affect their shape

 

Term
Carbohydrates, proteins and nucleic acids are called?
Definition
macromolecules
Term
what is a polymer?
Definition
a polymer is a long molecule consisting of many similar or identical building blocks linked by covalent bonds
Term
What are monmers and how are they linked to polymers?
Definition
Monomers are small chinas that repeat inside of a long chain which is called a polymer
Term
What is a condensation reaction?
Definition
a condensation reaction is a reaction where H2O is either lost or gained
Term
What is a dehydration reaction and how does it affect monomers?
Definition
A dehydration reaction is a reaction where water is lost in the reaction.  This is how monomers connected covalently.
Term
What facilitates the linking of monomers?
Definition
Enzymes speed up the dehydrration process involved in making monomers.
Term
How are polymers broken down?
Definition
Polymers are broken down into monomers by the addition of water a process called hydrolysis.
Term
What are the four large classes in biological molecules?
Definition
proteins, nucliec acids, carbohydrates and lipids
Term
What are carbohydrates and what are the two types?
Definition
Carbohydrates and both molecules and polymers of sugars.  The two types are monosaccharides and disaccharides.
Term
What are monosaccharides?
Definition
Monosaccharides are the simplest sugars.  generally monosaccharides have a formula that is a multiple of CH2O.  Glucose is the most common monosaccharide.
Term
What is a disaccharide? And how are they linked?
Definition
A disaccharide is two monosaccharids bonded by a glycosidic linkage, a covalent bond formed between two monosaccharides by a dehydration reaction.
Term
What are polysaccharides?
Definition
Polysaccharides are extremely large polymers.
Term
What is starch?
Definition
Starch is a polymer of glucose monomers inside plastids which include chloroplasts.  Hydrolysis breaks the polymer and allows the plant to acces the glucose.
Term
Polysaccharides make up what in plant cells?
Definition
cellulose.
Term
What are lipids?
Definition
fats, phospholipids and steriods and they mix porrly with water.
Term
What are fats?
Definition
large molecules made up of glycerols and fatty acids.  in making fat three fatty acids each join a glycerol by an ester linkage, bond between hydroxyl and carboxyl groups
Term
What is glycerol?
Definition
alcohol with three carbons each bearing a hydroxyl group.
Term
What is a fatty acid?
Definition
carbon chain with a carboxyl group on the end that gives it the name acid
Term
what is a satturated fatty acid and how is it different from a unsatturated fatty acid?
Definition
satturated fatty acid has been satturated with hydrogens and has only single bonds while a unsatturated fatty acid has atleast one double bond because of the loss of a hydrogen
Term
Why are phospholipids essential to cells?
Definition
Phospholipids make up cell membranes because they have hdrophilic and hydrophobic ends that make a double wall to protect the hydrophobic ends from the water and creating a membrane
Term
What are steroids?
Definition
Lipids characterized by four fused rings
Term
What is Cholestrol
Definition
cholestrol is the beginings of many steriods
Term
What are the eight types of proteins?
Definition

- enzymatic proteins - accelerate chemical reactions

- structural proteins - support (cellulose in cell walls)

- storage proteins - storage of amino acids

- transport proteins - transport other substances

- hormonal proteins - regulate organisms activities

- receptor proteins - response to chemical stimuli

- contractile and motor proteins - movement

- defensive proteins - protection against disease

Term
What are polypeptides called?
Definition
polymers of amino acids
Term
Proteins consist of...?
Definition
one or more polypeptides
Term
Amino acids are?
Definition
organic molecules possesing both carboxyl and amino groups
Term
The bonding of two amino acids is called?
Definition
a peptide bond
Term
What happens when a proteins environment is altered?
Definition
a change called denaturation occurs and the proteins becomes biologically inactive.
Term
What are chaperonin proteins and how do they work?
Definition
chaperonin proteins make sure that the folding in other proteins is not influenced negatively
Term
What are polynucleotides?
Definition
Polynucleotides are polymers of nucleis acids whcih are DNA and RNA
Term
What are the two families of nitrogenous bases in DNA?
Definition
purines and pyrimidine
Term
What are the properties of the pyrimidine family?
Definition
six sided ring of carbon
Term
What are the three members of the pyrimidine group?
Definition
cytosine, thymine and uracil
Term
What are purines made of?
Definition
a six member ring fused to a five member ring
Term
What are the two purines?
Definition
adenine and guanine
Term
The sugar in RNA is called?
Definition
ribose
Term
The sugar in DNA is called?
Definition
deoxyribose
Term
Adenine pairs with?
Definition
thymine
Term
Thymine pairs with?
Definition
adenine
Term
guanine pairs with?
Definition
cytosine
Term
cytosine pairs with?
Definition
guanine
Term
What is fermentation?
Definition
Fermentation is a catabolic process that is the partial degration of sugars without the use of oxygen
Term
What is the most efficient catabolic process? and what does this process entail?
Definition
Aerobic Respiration is the most efficient catabolic pathway and is where oxygen is consumed as a reactant along with other organic fuels. 
Term
Both aerobic and anaerobic respiration are part of what cell process?
Definition
cell respiration
Term
What is the process of aerobic respiration? (how does it layout)
Definition
organic compounds + oxygen => CO2 + H2O + Energy
Term
How does aerobic respiration layout in connection with glucose?
Definition
C6H12O6 + 6 O2 => 6 CO2 + 6 H2O + (ATP + Heat)
Term
What are redox reactions?
Definition
transfer of one or more electrons from one reactant to another
Term
The loss of electrons from a substance in a reaction is called?
Definition
oxidation
Term
the addition of electrons to a substance during a chemical reaction is known as?
Definition
reduction
Term
In a reaction the element being oxidized is known as the?
Definition
reducing agent
Term
In a reaction the electron acceptor is known as the?
Definition
oxidizing agent
Term
What is NAD+ and how does it connect with energy harvest?
Definition
electrons are stripped off of glucose in the form hydrogens.  hydrogens are not directly transfered to oxygen instead they are passed to NAD+ which is an electron carrier.  NAD+ functions as an oxidizing agent during respiration
Term
What is the elctron transport chain and how does it work?
Definition
the electron transport chain is used to break the fall of electrons to oxygen.  an electron chain is a chain of proteins on the inner membrane of mitochondria in eukaryotic cells and plasma membrane in prokaryotic cells.  H+ removed from glucose are shuttled by NAD+ (NADH)to the top higher energy end of the chain. at the bottom lower energy level O2 captures the hydrogens forming water
Term
What are the three stages of respiration?
Definition

Glygolysis

The Citric Acid Cycle

Oxidative Phosphorylation: electron transport and chemiosmosis

Term
What is oxidative phosphorylation?
Definition
A mode of ATP in which mitochondria capture energy released from the electron transport chain.
Term
What is substrate-level phosphorylation?
Definition
mode of ATP synthesis that occurs when an enzyme transfers a phosphate group from a substrate molecule to ADP, rather than adding inorganic phosphate to ADP as in oxidative phosphorylation
Term
What is glycolysis?
Definition
first step in respiration that breaks glucose down into two molecules of a compound called pyruvate
Term
What is ATP synthase?
Definition
ATP synthase is the enzyme that actually makes ATP from ADP and inorganic phosphate.  ATP synthase works like a ion pump in reverse.  Rather than hydrolyzing ATP to pump protons against their concentration gradient, under the conditions of cellular respiration, ATP synthase uses the energy of an existing ion gradient to power ATP synthesis .  In this case the existing ion gradient is the difference in H+ on either side of the mitochondrial membrane.
Term
What are the steps of alcohol fermentation?
Definition
In alcohol fermentation pyruvate is converted to ethanol in two steps.  The first step releases CO2 from the pyruvate which is converted to acetaldehyde.  In the second step acetaldehyde is reduced to ethanol by NADH which becomes NAD+ and regenerates supoply of NAD+ for glycolysis.
Term
What are the steps of lactic acid fermentation?
Definition
pyruvate is reduced by NADH to lactate as an end product with no release of CO2.
Term
What breaks down fatty acids?
Definition
Beta Oxidation breaks fatty acids down to two-carbon fragments, whcih enter the citric cycle as acetyl CoA.  NADH and FADH2 are also generated during beta Oxidation and can enter the electron transport chain.
Term
The conversion of sunlight to chemical energy is called what?
Definition
Photosynthesis
Term
An organism acquires the organic compounds it uses for energy and carbon skeletons through two major modes....
Definition

autotrophic nutrition - sustain themselves with out eating anything derived from other living beings. They produce their organic molecules from CO2 and other inorganic raw materials obtained from the environment.

 

heterotrophic nutrition - they are consumers eating other organisms

Term
What is the mesophyll?
Definition
tissue in a leaf
Term
How does CO2 enter and O2 leave a leaf?
Definition
through the stomata
Term
What is the chemical formula of photosynthesis?
Definition
6CO2 + 6H2O + Light Energy -> C6H12O6 + 6O2
Term
What are the two parts of photosynthesis?
Definition

Light reactions

Calvin Cycle

Term
How do light reactions work?
Definition

light reactions convert solar energy to chemical energy.

H2O is split providing H+ and protons and giving off O2 as a by product

the H+ goes to a NADP+ which becomes a NADPH

ATP  is generated through photophosphorylation

Term
carbon being incorporated ino organic compounds is called?
Definition
carbon Fixation
Term
What is a photosystem?
Definition
A photosystem is chlorophyll molecules organized along with other small organic molecules and proteins
Term
What are the names of three stages of the Calvin Cycle?
Definition

1. carbon Fixation

2. reduction

3. regeneration of

the CO2 acceptor

Term
What is the first step of the calvin cycle and ho does it work?
Definition

Carbon Fixation

- attaches CO2 to five carbon sugar named ribulose biphosphate

       - rubisco catalyses this step

- forms a six carbon intermediate

- very unstable and splits into to two 3-phosphoglycerate

Term
Frederick Griffith discovered transformation. What is it?
Definition
Transformation is a change in cells due to contact with different DNA.  Harmless virus becoming harmful when put in beaker with dead harmful bacteria.
Term
What are Helicases?
Definition
Helicases are enzymes that untwist the double helix at the replication forks seperating the two parent strands and making them available as template strands
Term
What is the replication fork?
Definition
A Y shaped region where the parental DNA is being unwound from the double helix
Term
What is topoisomerase?
Definition

topoisomerase breaks and rejoins DNA at the replication fork to relieve strain on the double helix

 

Term
What do DNA polymerases do?
Definition
They catalyze the synthesis of new DNA by adding nucleotides to a preexisting chain
Term
What is the primer?
Definition
The first nucleotide chain produced during DNA synthesis is actually RNA and is called the primer
Term
What is mismatch repair?
Definition
mismatch repair is where enzymes remove and replace incorrectly paired nucleotides that have resulted from replication errors.
Term
What is a nuclease?
Definition
An enzme that can cut out damaged DNA strands.
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