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22 DNA Replication and Repair
powerpoint lecture
20
Biology
Undergraduate 1
03/08/2011

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Term

Replication fork

Definition
A y-shaped region of each replication bubble, where new DNA strands are elongating
Term
Helicases
Definition
untwist the double helix at replication forks
Term
Single-strand binding protein
Definition
keeps DNA single stranded, to be used as a template
Term
Topoisomerase
Definition

corrects "overwinding" ahead of replication forks by breaking, swivelling and rejoining DNA strands

corrects overwinding, it cuts the sugar phosphate backbone periodically, races ahead of replication fork and snips the strands which is later on repaired. 

Term
Primase
Definition
Makes a primer which primes DNA replication... lays down a short stretch of RNA (5 to 10 nucleotides long) to provide a primed hydroxyl group so DNA polymerase can do its work
Term
DNA polymerases cannot ______ by they can add nucleotides to the ____ end.
Definition
initiate synthesis of a polynucleotide, 3'
Term
Does the enzyme primase require a primer?
Definition
no, it can make RNA from scratch, so it can add RNA nucleotides using parental dNA as a template
Term
DNA polymerase adds nucleotides in what form?
Definition
as a nucleoside triphosphate
Term
What supplies adenine to DNA?
Definition
dATP.... the difference between dATP and ATP is that the first one has deoxyribose while ATP has ribose 
Term
What does the structure of dATP look like?
Definition

[image]

Term
What does the structure of ATP look like?
Definition

[image]

Term
As each monomer of dATP joins the DNA strand what happens?
Definition
they lose 2 phosphate groups as pyrophosphate
Term
What type of structure does the double helix have?
Definition
an antiparallel structure in which the two strands are oriented in opposite directions (this affects replication)
Term
a new DNA strand can only elongate in which direction?
Definition
the 5' to 3' direction
Term
what direction is the leading strand in?
Definition

the direction that the DNA polymerase wants, and is always following the replication fork

 

unlike the lagging strand where DNA polymerase must work in a direction away from the replication fork 5’ to 3’ on the template

 

Term
Okazaki fragments are joined together by what?
Definition
DNA ligase
Term
What can damage DNA?
Definition

Chemicals 

and radioactive emissions

Term
Nucleotide excision repair
Definition
when in the sun UV causes dimerization of neighbouring thymines (they join together, neither of them base pair properly which causes a mutation in the double helix...forms skin cancer!)
Term
The 5' can't finish off because we have linear chromosomes, you can't go beyong it to set up a primer. What regulates this problem?
Definition

The end of our chromosomes have long repeat sequences called telomeres. They do not code for anything so it doesn't matter if you shorten it.

Some cells like cancer cells don't have this problem because of telomerase enzyme which is a built in primer that extends the telomere 

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