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RNA World
RNA, Origins of life and Evolution
33
Biochemistry
Undergraduate 1
01/11/2013

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Cards

Term
What is the most common organism group on the earth?
Definition
Insects
Term
What are the three things all organisms have in common?
Definition
DNA, RNA and proteins
Term
What was the order that biologists originally thought the three common things were?
Definition
DNA -> RNA -> Protein
Term
What is the problem biologists had with the original order?
Definition
DNA needed to make proteins and proteins needed to make DNA so what came first?
Term
What did the biologists conclude from the RNA problem?
Definition
RNA was made originally which created proteins which created DNA
Term
Why is the idea that RNA came first a more realistic view?
Definition
It is more variable that DNA as it has more functions than just a store of genetic information
Term
What three things make DNA differ from RNA?
Definition
Uracil instead of thymine, ribose sugar rather than deoxyribose and single stranded rather than double stranded
Term
What makes RNA more flexible than DNA?
Definition
Two -OH' groups by having a ribose sugar
Term
What is ATP?
Definition
An energy store
Term
What is NAD?
Definition
A redox coenzyme
Term
What did Stanley Miller do?
Definition
Try recreate early earth conditions to produce organic molecules
Term
What did Stanley Miller find?
Definition
He managed to synthesise simple molecules and amino acids
Term
What was the problem with Stanley Miller's experiment?
Definition
The production of these molecules resulted the depletion of the atmosphere which would not happen in early living conditions
Term
What are the four possibilities of the origin of life?
Definition
Atmosphere, Space, Deep sea vents or Clay catalysts
Term
What was the atmosphere theory of the origin of life?
Definition
Atmosphere contained simple elements which created larger molecules
Term
What was the space theory of the origin of life?
Definition
Meteorites hit earth containing amino acids, carbon compounds and water
Term
What is the deep sea vent theory of the origin of life?
Definition
Mineral rich water could form larger macro-molecules by being oxidised and reduced on the sea rocks
Term
What is the clay theory of the origin of life?
Definition
Evidence has shown that ogliosaccharides and nucletotides
Term
What are the five arguments in favour of an RNA world?
Definition
1)RNA can replicate itself
2)More parsimonious
3)RNA preceded DNA
4)Plausible
5)Ribososomes require RNA in protein synthesis
Term
What are the seven functions of RNA?
Definition
Store of genetic information, carry genetic information, scaffolding, structure, templates, catalytic activity and recognition
Term
What are virusoids?
Definition
Plant viruses
Term
How do virusoids replicate?
Definition
Rolling circle
Term
What does the hammerhead ribozyme do?
Definition
Cleave DNA replicated by rolling circle mechanisms
Term
What six activities does RNA have in the cell?
Definition
Ribozymes, binding to activate, transcription, pre-mRNA splicing, translation and organisation of DNA
Term
WHat are the three types of RNA
Definition
mRNA, tRNA and rRNA
Term
WHat is a riboswitch?
Definition
A sequence within RNA that binds small metabolites to regulate gene expression
Term
What does SELEX stand for?
Definition
Systematic Evolution of Ligands by EXponential Enrichment
Term
Outline the SELEX mechanism?
Definition
1)Select a random sequence (See if it prodcues RNA with desired products)
2)Amplify it
3)Mutate it
4)Select it again
5) See if it produces an RNA with desired prodcucts
Term
What are the five results found from SELEX?
Definition
RNA polymerisation, cycloadditions, C-C bonds, phosphorylation and C-N bond formation
Term
How can we use ribozymes to treat HIV infections?
Definition
The hammerhead ribozyme will cleave the HIV's DNA and prevent it from replicated
Term
What are Aptamers?
Definition
Molecules that can bind to a wide range of molecules
Term
What process found aptamers?
Definition
SELEX
Term
What three things ca aptamers be used for?
Definition
Biosensors, drug targets and gene regulation
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