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| most dangerous type of influenza |
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The "key" influenza uses to unlock the cell. |
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| how many genes does influenza have? |
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the "key" to the cell of influenza |
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| how many proteins are there on the surface of the average virus? |
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| how did hemaglutinin get its name? |
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literally "blood agglutination" (blood clumping) this is because hemagglutinin can bind to multiple cell's receptors causing clumping |
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what strategy for cellular entry does influenza use? (it's strategy 1) |
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it's called receptor mediated endocytosis (the whole virus is absorbed into the cell) |
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| how does the virus get into the cell in receptor mediated endocytosis? |
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| It binds to the receptors on the cell's surface, and then is absorbed into the cell (endocytosed). It is enclosed in a pocket of the cell's membrane (endosome) |
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| the pocket of cell membrane a virus is enclosed in when it first enters the cell during receptor mediated endocytosis |
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how does a virus get its genome out of the endosome? |
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| normal cell membranes contain "pumps" which usually pump protons out of the cell. However, the endosome has the membrane reversed, and the result is that protons are pumped into the endosome. this creates a lower acidic pH, and once the pH hits around 5, the virus's membrane and the cell membrane fuse into one, releaseing the DNA. |
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psitive strand viral RNA (in single stranded RNA viruses) |
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RNA is ready to translate into proteins inmediatemente |
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Negative strand RNA single stranded RNA viruses |
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The complement copy of the RNA First make the real RNA, then make the proteins. |
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| Influenza- possitive or negative strand? |
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what is different about viruses and polymerase? |
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polymerase is the stuff that replicates the RNA. For possitive strand RNA, they have the encoding for the polymerase, so once protein production takes place the polymerase will follow. In negative strand RNA, the virus has to make that second RNA strand, so it actually has to carry polymerase with it. |
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viruses rip apart the cell's mRNA and use the snippts to get the production of viral mRNA under way. They contain a "cap" that gets ribosomes working on cellular (or, now, viral) proteins. Once viruses hijack these, the cell can't produce any more protein for itself and it dies (cytolitic viruses) |
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the blob that creates a new strand of DNA or RNA based off another DNA or RNA template. |
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| what is the virus's "escape problem?" |
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| Newly minted viruses have hemaglutinin on their protein coats, which is great for trying to get into a cell, but when trying to get out of the cell, the virus "sticks" to its mother infectee. Also, viruses can get stuck together through hemmaglutinin binding too. The solution? Neuraminidase! That's the razor that viruses use to shave off siliac acid from cell membranes, making it less sticky |
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| The razor used to shave off siliac acid from infected cell membranes. The "escape sword." |
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| What's an advantage of carrying your own polymerase? |
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| You can infect non-proliferating cells. |
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| Because of the inflammation that triggers the cough reflex. Inflammation is caused by the killing of healthy repiratory cells, whether by the virus or the immune system's own response. |
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| how many influenza virus's does it take to start an infection? |
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| strain A of flu infects..... |
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| birds, pigs, seals, horses, ferrets........ the list goes on. |
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| strains B and C of influenza infect..... |
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| why does flu make a lot of interferon alarm bells go off? |
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| Influenza leaves a lot of double-stranded RNA lieing around in the nucleus of an infected cell, and it has a shady looking lipid envelope. |
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Protein Kinase This is the stuff that cells start pumping out after they get an interferon warning. PKR then floats around, and if it finds double stranded RNA (that's replicating viral RNA) then it binds to it, goes on high alert, and starts throwing phosphate molecules onto it. Basically it becomes a waring system for double stranded (replicating viral) RNA. |
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| how does PKR kill both cell and virus? |
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PKR targets a cellular protein called eIF2. eIF2 is needed to start the manufacturing of proteins, and when it is shut down, no more proteins can be produced. The result? Niether the cell nor the hopeful virus can reproduce, and both are killed. |
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| the viral protein that binds to double stranded RNa and prevents PKR from activating. |
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| how does influenza stop PKR from totally shutting down its infection? |
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| It produces NS1 which binds to its double stranded RNA. Te NS1 produced PKR from functioning at maximum capactiy, to the virus can stay just one step ahead of the immune response. |
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| Antibodies can't prevent a flu virus from entering a cell, they just tag it for destruction. However, if a virus enters a cell with some antibodies still clinging on, the antibodies can then interfer with viral reproduction. |
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| Most important player in the immune response during the first flu season: |
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Definition
killer T cells destroying infected cells and the virus within. |
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| Most important player in the immune response during flu season 2: |
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| B cells and the antibodies they produce. |
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| infections like the flu. They can't go into relapsed or chronic states |
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| when people are immune to older, outdated forms of the flu, but provide valuable targets for newer mutated flu strains. |
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| where did all types of flu A come from? |
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Ducks and other waterfowl. |
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| the "missing link" between bird flues and human flues. |
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pigs Pigs can get both human and bird flues, and then they mix up inside the pig, creating new and drastically different strains. |
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drastic changes to a virus's genome. like in pigs. |
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| the cause of flu symptoms |
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the interferon immune response. influenza activates a crap load of interferon, causing the fever, aches and fatigue. |
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| why does flu lead to pnemonia and the like? |
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| flu kills resting and reproducing epithelial cells. These destroyed cells are eventually replaced, but there is an interval in which the repiratory track is highly vulnerable to infection. Diseases like pnemonia find it all to easy to set up shop. |
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| possitive, single stranded RNA. |
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| A single long strand of nucleotides which breaks itself up into smaller strands, forming multiple proteins out of a single chain. |
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| rhinovirus genome replication |
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| first the viral polymersase has to make complementary copies, and then it makes the actual, possitive copies (vRNA) |
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the possitive copies of viral genomes (like in rhinoviruses) |
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| the complementary copies of viral RNA |
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| influenza replicates in the |
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| rhinoviruses (and most other human viruses) replicate in the |
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influenza buds. rhinoviruses..... |
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influenza hijacks caps. rhinoviruses....... |
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instead carry their own, coded form of a cap. but in addition they also encode for a protein that disrupts the production of cellular caps. The result is the same as that with flue. The cell can't produce and mRNA, and the cell eventually starves. |
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| rhinovirus reproduction is............ hour long. |
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| the structure of a rhinovirus's capsid makes it so that it prefers..... |
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| cooler temperatures. around 91 degrees. Therefore it won't go to the steamy lungs, but only to the nose and upper respiratory tract. |
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| Influenza's envelope makes it so that........ |
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| it prefers warmer areas, 98 degrees, around the lungs. |
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| Which "river" does influenza take? |
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Definition
the lower tract. It has to back paddle against the current that brings mucous up from the lungs toward the throat to be swallowed. |
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| Which "river" do rhinoviruses take? |
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| the "down" river. They have to swim against the current that sweeps mucous down from the nose towards the throat. |
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| why don't rhinoviruses set off as much interferon as flu? |
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it interferes with the system that looses the interferon from the cell. Because the virus does't set off much interferon, it has not developed any clever strategies for avoiding interferon. |
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| the _____ immune system cleans up a rhinovirus infection |
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| the ______ immune system cleans up a flue infection |
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| why can a rhinovirus infect the same host over and over and over again? |
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Because the innate immune system handles rhinovirus infections, the struggle is long over before the adaptive immune system can kick in and produce antibodies. The result? The immune system won't recognize the virus when it hits again and the common cold can reinfect the same host. |
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| why does the rhinovirus want to keep you relatively fit? |
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| Because if you're too sick you will stay at home, instead of going to school and sneezing a little bit and infecting other students. |
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| why is the rhinovirus the world's most poplular virus? |
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Because it can reinfect people over and over again, and because of slight antigenic drifts. However there are no antigenic shifts because humans are its only resevoires. |
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| why are sinus aches part of the common cold? |
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| because the sneezing a rhinovirus and the immune response causes some of the virus to shoot up into the sinusses, where it causes ear infections and sinus aches. |
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| why are they called "rhino viruses" |
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for the Greek word rhinos, or nose. during the innate immune response, the immune system targets the capilarry filled surface areas of the upper respiratory tract. They rupture, causing swelling and halting viral spread. This inflammation causes the runny nose and can constrict the mucous filled airways. |
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| why do rhinoviruses produce fever? |
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| Because macrophages produce interleukin 1. This little guy raises the temperature past where a rhinovirus can stand (remember, they like temps around 91 degrees). |
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| why are rhinoviruses so much milder than influenza? |
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1. They don't activate much interferon, so there's less of an explosive reaction from the immune system. 2. Rhinoviruses like cooler temps, so they don't go for the deep tissues in the lungs, just the higher up, respiratatory tract. |
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| Measles comes in through_____ and affects_____ |
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the respiratory tract the whole body. |
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| the measles genome is..... |
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| a single stranded negative piece of RNA |
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| measle's entry strategy is.... |
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to leave its coat at the door. the virus fuses with the cell membrane and injects its genome into the cytoplasm. |
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| measle replication takes place in the .... |
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making short segments of RNA, which encode for seperate proteins each. when it comes time to assembling new genomes for the baby viruses, some of the extra, new viral proteins drift over to the mother genome, and mask the RNA bits that signal for stopping and starting the short RNA segments. The result? A new, full, single strand of RNA complement of mama's RNA. Now just go over it again and you have the original, negative strand of RNA. |
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| the suspected cellular receptor for measles. Although we're still not sure if it is, it would make sense because CD46 if found in the membranes of most cells in the body. |
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| the innate immune system does a pretty good job at keeping a measles infection at bay for the first ten days. As a result, you probably won't know you have measles until ten days later. |
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| when influenza infects a dendritic cell (butler cells) .... |
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it doesn't reproduce hardly at all. |
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| when measles infect dendritic (butler) cells.... |
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| measles starts proliferating like wild fire. |
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| why does measles infect the dendritic cells? |
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because it can't wait for the butler to flee to the lymph nodes, where it readily infects the activated and hungry macrophages. Once the macrophages are infected, the virus is then carried throughout the entire blood stream, where it can infect more CD46 cells, especially epithelial cells. The virus then has it made throughout the entire body. |
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| why are measle's mutants not a threat? |
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it's because the measles protein coat is so specific that almost any mutation will render the virus helpless. Consequently, there is only one strain of measles. |
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viruses that have different binding sites for neutralizing antibodies |
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| why are humans the only possible host for measles? |
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| because only humans have CD46 receptors |
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| Why must measle be relatively new? |
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Because it needs an unbroken chain of infection. Because measles is so specific, it can't mutate, therefore there's only one strain. Once a person contracts that one strain, the adaptive immune system documents it, and life long immunity is gained. That means the virus must consistently find new hosts to infect. These new hosts must be in the near vicinity (coughing distance), and large, congested populations did not exist until about 6,000 years ago, so the virus could not have had a population to infect. So it's new. |
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| what's measle's strategy to avoid antibodies? |
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To never leave the inside of the cell. The fusion protein which allows the virus to check its coat at the doof is also capable of fusing with multiple cell membranes. The result? Large blobs of fused cells, containing many nuclei and many hijackable organelles. This lets the virus replicate more in one go, before having to exit the cell and risk the run of meeting with antibodies. |
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| What plays the critical role in defending against a measles attack? |
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| Killer T cells. Because measles will fuse many cells together at a time, and lie in wait, it's up to the killer T cells to scan for all infected cells and destroy them. |
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| why doens't measles release huge ammounts of interferon? |
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They're not sure. It's suspected to be like rhinoviruses, stopping the release,but they're really not sure. |
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what is an advantage of measles attacking dendritic cells? |
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Infecting dendric cells causes measles to attack macrophages and the lymph nodes as well. The fewer macrophages, the weaker the immune response. The destroyed dendritic and macrophages are also the leaders, they direct the immune response. Consequently, some times the wrong antibody is produced, or not enough killer T cells are activated. Oh, and there is research to support that measles also can trigger T cells to commit suicide. |
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| Measles initially infects the respiratory tract. Then it goes to the lymph nodes and the entire lymphatic system. Then it returns to the respiratory tract, in even larger, more powerful numbers. |
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| the difference between red eyes in measles and in flu |
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Flu peeps usually rub their eyes with contaminated hands. Measles just likes to attack the mucous membranes. |
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| in measles.... where does the rash come from? |
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| cytokines produced by stressed T cells. |
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| Indirect deaths of measles victims. |
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| Measles causes immunosupression, leaving the body open to additional infection for almost a year. |
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sometimes, measles will infect the brain. Then the immune response causes swelling, which then destroys myelin sheath, resulting in destruction of the nervous system and possible brain damage and death. |
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