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Pyruvate Dehydrogenase
After Glycolysis, before TCA cycle
12
Biochemistry
Undergraduate 3
02/17/2011

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Term
Purpose of Pyruvate Dehydrogenase (PDH) complex
Definition

Before entering the citric acid cycle, glucose and fatty acids are degraded to acetyl groups of acetyl-CoA

 

in this case, glucose product pyruvate is oxidized to  CO2 and acteyl-CoA by PDH complex

Term
PDH complex location, basic composition, purpose
Definition
  • Multiple copies of the three enzymes in the system
  • Five cofactors (four from vitamins) are involved in pyruvate oxidation to acetyl coa

 

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Term
Overall PDH reaction
Definition
  • Pyruvate oxidized - CO2 and Acetyl-CoA
  • oxidative decarboxylation
  • NADH formed- eventually gives hydride ion (which has two electrons) to respiratory chain oxygen
  • [image]
Term
Five Coenzymes and vitamins
Definition
  • Thiamine pyrophosphate (TPP)- thiamine
  • Flavin adenine dinucleotide (FAD)-riboflavin
  • CoA-SH -pantothenate
  • Nicotinamide adenine dinucleotide (NAD)-niacin
  • lipoate
Term
Coenzyme A (CoA-SH) form and function
Definition
  • Reactive thio group used to make CoA an acyl carrier
  • linked acyl groups are called thioesters
  • when bound to coA, high transfer potential of acyl group and high std free energy of hydrolysis = donate acyl to acceptor molecules[image]
Term
Lipoate form and function
Definition
  • two thiol groups can undergo reversible oxidation to s-s bond
  • because of redox potential, can be electron carrier (H:) or acyl carrier
  • [image]
Term
Enzymes of the PDH complex and basic E1-E2-E3 structure
Definition
  • Pyruvate dehydrogenase (E1) -TPP bound
  • Dihydrolipoyl transacetylase (E2)- liopate attaches here and linking binding domains
  • Dihydrolipoyl dehydrogenase (E3)- FAD bound
Term
PDH general enzyme layout and mechanism
Definition

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  1. c-1 released as CO2, c2 attaches to TPP (hydroxyethyl TPP). slow step
  2. Hydroxyethyl group oxid. to acetate. trasferred to lipoate. electrons from oxid. reduce the s-s of lipoate on E2 to -SH
  3. transesterification of acetyl to CoA= Acetyl-CoA
  4. previously reduced lipoyl grps(-SH) in E2 transfer H's to FAD in E3(form FADH2), restoring s-s
  5. E3 FADH2 loses H- to NAD+ = NADH
Term
Initial binding
Definition

 

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Term

NAD structure  and function

what types of groups does it oxidize?

Definition

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Term
FAD form and function
Definition

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