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Poultry Breeding Exam 1
Info for Poultry Breeding Exam 1
138
Agriculture
Undergraduate 3
01/05/2018

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Term
A gene carries...
Definition
genetic info
Term
A generally accepted p for acceptance or rejection of a hypothesis
Definition
5% (0.05)
Term
All the crosses Mendel did were with...
Definition
monohybrids
Term
Allele (Gene) Frequency
Definition
The relative frequency of alleles in a population
Term
Breeding
Definition
selecting the best animals
Term
Chi-Square Test
Definition
A test used to evaluate how closely observed results fit expectations.
Term
Chicken has ______ pairs of chromosomes
Definition
39
Term
Complementation or complementary gene action
Definition
This is a type of interaction in which two dominant alleles of different genes must be present (co-operate) to produce a specific phenotype. That is, there are two different genes with similar effects on a phenotype.
Term
Cytoplasmic inheritance
Definition
Mitochondria have their own DNA, and mitochondria DNA is maternally inherited. Therefore some traits may be under the control of genes in the cytoplasm (mitochondria).
Term
Degrees of freedom (df).
Definition
number of classes-1
Term
Differences of fertility and viability
Definition
Differences in fertility in the parental generation will lead to unequal contribution of progeny towards the next generation; which could affect the allele frequency in the progeny generation. At the same time, differences in viability in the progeny generation can also alter allele frequency.
Term
Dihybrid cross deals with...
Definition
2 traits
Term
Dominance
Definition
the interaction among alleles at a locus
Term
Dominant epistasis
Definition
A dominant epistasis will express a phenotype in a heterozygote or homozygote and masks the phenotype produced by alleles of another gene.
Term
Epistasis
Definition
the interaction between alleles at two or more loci
Term
Equal Fertility and Viability
Definition
Differences in fertility/viability mean unequal gametic frequencies, leading to changes in allele frequencies.
Term
Every gene is located...
Definition
on a specific location on a specific chromosome
Term
F1 (first filial) generation
Definition
the offspring of the cross of the parent (P) generation
Term
F2 (second filial) generation
Definition
offspring of the F1 (first filial) generation
Term
Gene
Definition
The basic unit of inheritance consisting of DNA segment at a specific location on a chromosome
Term
Gene consists of...
Definition
string of DNA
Term
Genomic imprinting
Definition
When an offspring inherit both alleles of gene from one parent and none from the other parent.
Term
Genotype
Definition
the genetic composition of an individual
Term
Genotypic Frequency
Definition
The relative frequency of a particular genotype in a population
Term
H
Definition
Genotypic frequency of the heterozygous genotype
Term
Hardy-Weinberg Equilibrium
Definition
In a large random mating population in the absence of selection, mutation, drift or migration, the allele frequency remains constant from generation to generation
Term
Hardy-Weinberg e'librium works in absence of...
Definition
1: selection
2: mutation
3: drift
4: migration

in absence of these, allele frequency remains constant
Term
Heterogametic sex
Definition
The sex or gender that makes two different chromosomal types of gamete; e.g. female birds (Z and W)
Term
Heterozygote
Definition
contains 1 dominant and 1 recessive
Term
Homogametic sex
Definition
The sex or gender that makes only one chromosomal type of gamete; e.g. male birds (Z).
Term
Homozygote
Definition
contains 2 dominant or 2 recessive
Term
If a population differs by 2 traits, it’s a ______ population
Definition
dihybrid
Term
If a population differs by only 1 trait, it’s a ______ population
Definition
monohybrid
Term
Is there a perfect animal for all environments?
Definition
no
Term
Linkage
Definition
If two different genes are located relatively close to each other on the same chromosome they cannot segregate independently
Term
Locus
Definition
The specific location of a gene on a chromosome
Term
Mendel crossbred...
Definition
peas
Term
Mendel crossed ______ and ______ peas
Definition
yellow
green
Term
Mendel's 1st law
Definition
the law of segregation
Term
Mendel's 2 laws
Definition
law of segregation

law of independent assortment
Term
Mendel's law of independent assortment
Definition
Segregation of genes at one locus does not influence the segregation of genes at another locus
Term
Mendel’s 2nd law
Definition
the law of independent assortment
Term
Mendel’s law of segregation
Definition
Members of each pair of alleles separate from each other when an individual forms germ cells or gametes
Term
Migration
Definition
The allele frequency of a population may change as a result of movement of individuals into or out of a population.
Term
Monohybrid
Definition
An offspring resulting from a cross between genotypes that are homozygous for the alternative alleles of a gene.
Term
Monohybrid cross
Definition
A cross between genotypes (pure-lines) that is homozygous for alternative alleles of the same gene
Term
Mutation
Definition
A process that alters DNA sequence creates new alleles or causes a population to lose alleles. Creation or loss of alleles causes changes in allele frequency.
Term
No matter how many genotypes you have, you gotta look at it like this
Definition
from the one locus point of view
Term
P
Definition
Genotypic frequency of the homozygous dominant genotype
Term
Phenotype
Definition
physical characteristics of a trait
Term
Pleiotropy
Definition
A gene can affect more than one trait.
Term
Polygenetic Inheritance
Definition
Traits are determined by more than one gene, e.g. egg size, body weight.
Term
Q
Definition
Genotypic frequency of the homozygous recessive genotype
Term
Random Mating
Definition
When all individuals have an equal chance of mating
Term
Random drift
Definition
The alleles transmitted from one generation to the next are a sample of alleles in the parent generation. Allele frequencies can change due purely to chance. The smaller the number of parents selected to breed offspring for the next generation, the greater the propensity of allele frequency change due to chance.
Term
Recessive epistasis
Definition
A recessive epistatic allele masks the phenotypic effects of the alleles of the gene when the recessive epistatic allele is homozygous.
Term
Selection
Definition
The process that determines which individuals become parents, and how many offspring they produce affect allele frequency. Selection causes changes in allele frequency.
Term
Statistical significance (p).
Definition
the probability, p of obtaining the observed results if the null hypothesis is true
Term
Test Cross
Definition
crossing an unknown with a homozygous recessive individual to determine the genotype of the unknown
Term
The Null Hypothesis for a contingency table
Definition
to test whether the frequencies of observations in the rows are independent of the frequencies of the observations in the columns.
Term
The frequency of an allele in a population can be changed as a result of...
Definition
(1) mutation
(2) selection
(3) migration
(4) random sampling effects which is sometimes referred to as random genetic drift
Term
The genotypic frequency of the progeny depends ONLY on the ______ of the parent and NOT on the ______ of the parent.
Definition
Allele frequency
genotypic frequency
Term
The goal of population genetics
Definition
to understand the genetic composition of a population and the forces that determine and change that composition.
Term
The number of chromosomes for each species is...
Definition
fixed
Term
Trait (character)
Definition
Whatever we can consistently observe or measure in a living organism
Term
Trait or Character
Definition
Any consistently observed or measured characteristics of an individual
Term
X2
Definition
chi-square
Term
allele
Definition
different or alternative form of a gene
Term
alternative hypothesis (HA)
Definition
hypothesis that states that there is a difference between observed and expected
Term
back cross
Definition
the mating of a hybrid to a purebred of either the male or female parent breed
Term
chi-square
Definition
used to determine whether or not a population is in balance
Term
chromosomes
Definition
which are very long strands of DNA in the nucleus of every cell of an organism
Term
codominance
Definition
heterozygote has both alleles equally expressed

red X white yields red and white spotted

ABO blood type is an example
Term
complementary epistasis
Definition
one dominant allele at both loci is needed for something to be expressed
Term
complete dominance
Definition
dominant allele masks the recessive allele
Term
contingency table
Definition
basically a table that shows relationship between two events
Term
dihybrid cross
Definition
cross of pure line plants that differ at two loci
Term
do this for each allele
Definition
find a notation for it
Term
does size of organism have anything to do with number of chromosomes?
Definition
no
Term
dominance
Definition
interaction of alleles within a locus
Term
dominant epistasis
Definition
the dominant allele at one locus silences the effect of the alleles at another locus
Term
epistasis
Definition
the interaction among alleles at two or more loci
Term
equation for allele frequencies
Definition
p + q = 1

p = Frequency of the dominant allele
q = Frequency of the recessive allele

Allele frequencies at a locus always add up to ONE
Term
equation for genotypic frequencies
Definition
P + H + Q = 1

P = Genotypic frequency of the homozygous dominant genotype
H = Genotypic frequency of the heterozygous genotype
Q = Genotypic frequency of the homozygous recessive genotype

Genotype frequencies at a locus add up to ONE
Term
example of a contingency table
Definition
[image]
Term
example of epistasis in chickens
Definition
interaction of the rose and pea loci to determine comb type
Term
genetics
Definition
the study of the basis of heredity and variation
Term
genotype
Definition
the genetic makeup of an individual
Term
heredity
Definition
simply means that offspring develop some of the same characteristics like their parents
Term
how comb type is determined in chickens
Definition
interactions of the rose and pea loci
Term
how mutation changes allele frequncy
Definition
by creating new alleles
Term
how to calculate allele frequency
Definition
p = f(B) = ((BB + ½Bb)/N) = P + ½H
q = f(b) = ((bb + ½Bb)/N) = Q + ½H
Term
how to calculate d.f. in a contingency table
Definition
(# of R's - 1) * (# of C's - 1) = d.f.
Term
how to calculate expected numbers in a contingency table
Definition
here's an example:

(# of males / total population) * (# of specific variable) = expected number for that variable

(# of females / total population) * (# of specific variable) = expected number for that variable
Term
how to calculate genotype frequency
Definition
f(BB) = 30/100 = 0.30 =P
f(Bb) = 60/100 = 0.60 =H
f(bb) = 10/100 = 0.10 =Q
Term
how to calculate the test statistic (X2)
Definition
X2 = Σ ((O-E)2/E)
Term
incomplete dominance
Definition
mix of 2 phenotypes yields offspring with intermediate phenotype, such as red X white yields pink
Term
modified Mendel ratio
Definition
deviation from the expected Mendelian ratio
Term
monohybrid cross
Definition
A cross between genotypes (pure-lines) that is homozygous for alternative alleles of the same gene
Term
mutation
Definition
change in DNA sequence
Term
null hypothesis (H0)
Definition
states that the observed results will be the same as the expected results

needs to be tested
Term
number of chromosomes in a chicken
Definition
78 (38 pairs of autosomes and one pair of sex chromosome)
Term
other than phenotypic ratios, produce these
Definition
genotypic ratios
Term
overdominance
Definition
heterozygote has a phenotype more pronounced than either of the homozygote

red X white yields deep red
Term
p
Definition
Frequency of the dominant allele
Term
phenotype
Definition
the observable or measurable form of a trait
Term
phenotypic ratio of monohybrid cross between 2 heterozygotes
Definition
3:1
Term
population
Definition
A group of breeding individuals
Term
population to toss out
Definition
population that's not in e'librium
Term
procedure for doing a chi-square test
Definition
1: State a null hypothesis (H0). 2: Calculate your test statistic (X2). 3: Degrees of freedom (df). 4: Statistical significance (p).
Term
q
Definition
Frequency of the recessive allele
Term
recessive epistasis
Definition
when 2 copies of the recessive allele at one locus silences the effect of the alleles at another locus
Term
some assumptions of Hardy-Weinberg law
Definition
-random mating
-equal fertility and viability
Term
some comb types in chickens
Definition
-pea
-rose
-single
-walnut
Term
some degrees of dominance
Definition
1: complete
2: incomplete
3: codominance or no dominance
4: overdominance
5: underdominance
Term
some factors that can cause changes in allele and genotypic frequencies
Definition
-selection
-migration
-random drift
-mutation
-differences of fertility and viability
Term
test cross
Definition
when you cross a homozygous recessive with an unknown
Term
the hypothesis you use when doing a chi-square test
Definition
null hypothesis (H0)
Term
the law of independent assortment
Definition
basically says that Segregation of genes at one locus does not influence the segregation of genes at another locus
Term
the phenotypic ratio we seem to obtain in dihybrid crosses
Definition
9:3:3:1
Term
the phenotypic ratio we seem to obtain in monohybrid crosses
Definition
1:2:1
Term
the sex chromosomes in chickens
Definition
ZZ and ZW, male and female respectively
Term
the sex chromosomes in humans
Definition
XY and XX, male and female respectively
Term
the similarity of our genes
Definition
We all have pretty much the same genes
Term
the trait shown in the F1 (first filial) generation
Definition
all dominant
Term
the traits shown in the F2 (second filial) generation
Definition
3/4 dominant and 1/4 recessive
Term
the way the sex chromosomes are in birds
Definition
ZZ Male
ZW Female
Term
variability
Definition
differences
Term
what happens to the genes in meiosis?
Definition
half of the genome from each parent gets transmitted to each gamete
Term
what happens when there's a dominant and a recessive allele present?
Definition
the dominant gets expressed
Term
when segregation happens
Definition
meiosis
Term
when selecting the best animal, what you're really doing is...
Definition
selecting the best alleles and genes
Term
when the recessive allele gets expressed
Definition
only when there’s 2 recessive’s present
Term
when the thing with phenotypic ratios is true
Definition
only when you have complete dominance at each locus
Term
when to accept the null hypothesis
Definition
when X2 is within the range on the table for the degree of freedom
Term
when to reject null hypothesis
Definition
when X2cal > X2table
Term
when to reject the null hypothesis
Definition
when X2 is not within the range on the table for the degree of freedom
Term
why could have Mendel been lucky?
Definition
because all the traits he observed each occur on different chromosomes
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