Shared Flashcard Set

Details

Plant Growth and Development
University of Guelph BOT*3310: Final
381
Plant Sciences
Undergraduate 3
04/16/2016

Additional Plant Sciences Flashcards

 


 

Cards

Term
2,4-D
Definition
LD50 in plants is 666 mg/kg. LD50 in humans is 46.6 g. Used to kill dicots; causes premature aging in leaves. The plant wilts after 24 hours; there is tissue necrosis. Can affect grasses, but a much higher dose is needed. Use is limited in Ontario. Has a long half-life in the plant.
Term
35S
Definition
Knocks up gene expression.
Term
A
Definition
Genes in the ABC model. Inhibit C genes, and are inhibited by C. Defined as a boundary, held back by C. Alone, it produces sepals. Together with B, it produces petals. If you remove A, C takes over its domain, and the flower develops with only stamens and pistils, with no sepals or petals. Includes AP1, and AP2.
Term
ABA
Definition
Mutants in Arabidopsis are ABA deficient. Seeds never enter dormancy; seed cells never stop metabolizing and have a short viability range, cannot be stored for very long.
Term
ABC model
Definition
Accounts for many observations in two distantly related eudicot species, snapdragons and Arabdiopsis. Provides a way of understanding how relatively few key regulators can combinatorilly provide a complex outcome. ABC genes are necessary, but not sufficient to produce floral organs. There are A, B, C, and E genes.
Term
ABCB19
Definition
Encodes an auxin efflux protein that moves auxin all directions except upwards.
Term
ABI
Definition
Mutants in Arabidopsis are ABA insensitive. Seeds never enter late dormancy; seed cells never stop metabolizing, and have short viability range, cannot be stored for very long.
Term
Abscisic acid (ABA)
Definition

One of the Big 5. The "stress hormone", or "universal hormone". Antagonistic to GA. Inhibited by cytokinins and ethylene. Boosts its own production, but cannot initiate its production without a stressor, and is not sufficient to maintain its own synthesis without a stressor. A dynamic, sensitive system.

Involved in seed maturation and dormancy, and drought responses and recovery. Delay growth until environmental conditions are favourable. Helps plants survive freezing and salt stresses. Despite its name, does not cause abscission. Syntheiszed in all cells, in plastids.

During seed development, it promotes tolerance to desiccation, accumulation of seed storage proteins, and keeps the embryo dormant: levels peak during late embryogenesis then plummet to allow for GA sensitivity in the dormant seed. Inhibits seed germination.

Increases in plants during drought stress: increases water conductivity of roots, and the root/shoot ratio. Produced in dryign roots, and moves through the xylem to leaves. In the leaves, it causes stomatal closure and low transpiration. Causes K+ and other anions to leaves guard cells, causing water to leave and stomatal closure. Has the same effect on leaves whether sprayed on or delivered from roots, depending on the species.

Abscisic acid mutants do not perceive drought stress, and include cpk10, vp1, abi, aba, and notabilis.

Abscisic acid is used in greenhouse production of flowers to reduce drought impact.

Produced in animal pancreas cells by a different biosynthesis pathway, involved in calcium-based responses in animals.

Term
Abscission
Definition

Fruit drop

Once fruit drops tot he ground, it has a short shelf life. GA can be used to prevent fruit drop by synchronizing ripening for easy harvest. Abscission is not a growth resonse; it is a specific response to the balance of ABA and GA. A change in the ratio causes some cells to die.

Term
Abscission induction phase
Definition
A phase in leaf abscission. A reduction in auxin from the leaf increases ethylene sensitivity in the abscission zone, which triggers abscission phase.
Term
Abscission phase
Definition
A phase of leaf abscission. Synthesis of enzymes that hydrolyze cell wall polysaccharides in the abscission zone result in cell separation and leaf abscission.
Term
ACC
Definition

Aminocycloprompate carboxylic acid

An intermediate in ethylene synthesis.

Term
ACC oxidase (ACO)
Definition
An enzyme which converts ACC into ethylene. Uses oxygen, and produces carbon dioxide. A rate-limiting enzyme for ethylene synthesis.
Term
ACC synthase (ACS)
Definition
Converts SAM into ACC. A rate-limiting enzyme for ethylene synthesis. Promoted by ethylene, forming a positive-feedback loop.
Term
Actinostele
Definition
A type of vasculature pattern. Rays of xylem form the centre, with phloem filling the gaps.
Term
Adaptive walk
Definition
Evolutionary paths taken by a population towards a new phenotypic maximum. Nort/south shifts have changes in photoperiod and ecology. West/east shifts have changes in ecology.
Term
AGAMOUS (AG)
Definition
Encodes a MADS-box transcription factor. A class C homeotic gene. Expressed in whorls 3 and 4.
Term
Agent orange
Definition
2,4-D plus a carcinogen. A terrible weapon used in the Vietnam War. It is illegal.
Term
Agrobacterium tumefaciens
Definition
A bacterial infection of the stem tissue, activating cell division and producing a gall. Lives in the extracellular spaces of the plant, and sucks sap from plant cells. Cause 2 - 3 insertions of genes throughout the genome. The bacteria can be killed at 42º C. Infected plant cells will proliferate in tissue culture because it injects ipt gene into plant cells.
Term
Amphocribal bundles
Definition
A type of vasculature pattern. Vascular bundles surround a pith, with xylem in the centre and phloem surrounding it.
Term
Amphivasal bundles
Definition
A type of vasculature pattern. Vascular bundles surround a pit, with phloem in the centre and xylem surrounding it.
Term
Amplitude
Definition
A parameter that defines circadian rhythms. The distance between peak and trough. In biological rhythms it can often vary while the period remains unchanged.
Term
AmSEP3B
Definition
An SEP ortholog in Antirrhinum.
Term
Analytical replicate
Definition
Individual measurements of technical replicates. When all analytical replicates of a part are combined, the resulting mean value represents one technical replicate.
Term
Angiosperm
Definition
Evolved in the Cretaceous period. Became the dominant plant form around 100 million years ago.
Term
APETALA 1 (AP1)
Definition
Encodes a MADS-box transcription factor. A class A homeotic gene, producing meristem identity. Expressed in the floral meristem, whorl 1.
Term
APETALA 2 (AP2)
Definition
Encodes an AP2/EREBP transcription factor. A class A homeotic gene, producing floral meristem identity. Expressed in the floral meristem, whorl 1.
Term
APETALA 3 (AP3)
Definition
A class B homeotic gene.
Term
Apical dominance
Definition
Varies with species. Inhibition of lateral buds by apical shoots. The growing apical shoot inhibits lateral bud growth. Decapitation releases lateral buds. Controlled by auxin from the shoot apex. Auxin inhibits lateral meristems. Response is species-specific.
Term
Apple
Definition

Malus sp.

A woody plant with a juvenile period of 4 - 8 years.

Never pull down on an apple, you will damage the bud so that it cannot produce next year. Instead, pull upwards.

Cytokinin is applied at flowering, to increase floral number, and revive old buds. Cytokinin is not normally found at high levels during this time; it is made in seeds. Cytokinin is added only to older trees; younger trees do not need it.

Term
Arabidopsis
Definition
A facultative long day plant. A hermaphrodite, and a self-fertilizer most of the time; pollen is deposited onto the stigma as anthers grow past the stigma. Flowering is controlled by photoperiod and vernalization. The SAM produces 2 - 5 flowers each day when flowering. The flower has four sepals, four petals, six stamens (two shorter than the rest), and two fused carpels forming one pistil.
Term
Arabidopsis histidine phosphotransfer (AHP)
Definition
Accepts a phosphate group from CRE. Enters the nucleus, and phosphorylates ARR. Functions as a signalling intermediated that transmits membrane-perceived cytokinin signals to ARPs.
Term
Arabidopsis response regulator (ARR)
Definition
A transcription factor. Accepts a phosphate group from AHP inside the nucleus, activating it, allowing it to control exression of genes such as cyclicn D3. The phosphate attaches to an aspartate group. Two classes: type A and B.
Term
AtCO
Definition
The CO ortholog in potatoes.
Term
AtIDD15
Definition
A gene found in all plants. Causes starcha ccumulation in special cells. Loss-of-function mutation is associated with decreased starch in endodermal cells, and loose plant architecture.
Term
Autocatalytic
Definition
Adding ethylene leads to production of more ethylene, and speeds up fruit ripening.
Term
Autonomous floral induction pathway
Definition
An endogenous floral induction pathway. Controlled by FCA in Arabidopsis.
Term
Aux/IAA
Definition
Proteins that prevent ARFs from working by binding to it. Auxin targets it for destruction, and is itself destroyed in this process.
Term
AUX1
Definition
Encodes an auxin influx protein, permease.
Term
Auxin (IAA)
Definition

One of the Big 5.  Found at highest concentration at the tips of the root and shoot. Inhibited by cytokinins. Concentrations rise and fall with GA; promoted by GA, and promotes GA in vegetative parts. Promotes production of ethylene. Polar transport; flows only downwards, and cannot affect organs above its source. Establishes polarity in the plant body and cell.

Has two forms: IAA- and IAAH. Targets Aux/IAA proteins for destruction, activating ARFs, controlling gene transcription.

Has roles in many parts of plant growth and development. Increase shoot growth. Has a different effect on roots. Has roles in phototropic and gravitropic growth, patterning in embryo and shoot/apical meristems, vascular development, wound repair, lateral shoot formation, apical dominance, meristem proliferation, and leaf senescence.

In phototropism, auxin accumulates on the shaded side of the shoot, and the lit side of the root. Causes more growth to one side, and bending of the plant.

In wounding, auxin accumulates in the apoplastic spaces, and the plant redistributes transport, based on the change in auxin flow.

In leaf senescence, it promotes ethylene production, promoting senescence in old leaves, but is itslef a negative regulator of leaf senescence. There is high auxin in young leaves, reducing their sensitivity to ethylene in the abscission zone.

Term
Auxin efflux carrier
Definition
Establishes auxin transporter pathways. Includes PIN.
Term
Auxin influx carrier
Definition
A H+ co-transporter. Includes AUX1.
Term
Auxin response factor (ARF)
Definition
Transcription factors affected by auxin. The ARF homodimer controls gene transcription. Dimerise when released from Aux/IAA (when Aux/IAA is released, it is degraded). Regulates auxin-regulated genes including the gene for Aux/IAA: it represses its own expression, leading to a negative feedback loop.
Term
B
Definition
Genes in the ABC model. Restricted. Overlap with A and C. Alone, it produces no organs. Together with A, it produces petals. Together with C, it produces stamens. If you remove B, the flower develops with only sepals and pistils, no petals or stamens. Includes AP3 and PI.
Term
Bamboo
Definition
A monocot which produces strong wood; an exception to the rule. It has hollow stems, making them strong.
Term
Bicollateral bundles
Definition
A type of vasculature pattern. Vascular bundles surround a pith, with xylem flanked by phloem on either side.
Term
Auxin, gibberellins, cytokinins, ethylene, and abscisic acid. Also includes brassinosteroids, jasmonic acid, and strigolactones. Hormones act together and/or in opposition to each other and additional forms of each other. Discovered through developmental studies.
Definition
Term
Bimolecular fluorescence complementation (BiFC)
Definition
A method for detecting interactions between molecules in in vitro interactions. The fluroescent protein YFP is split into two halves, each alone does not fluoresce. Each half is fused to proteins of interest. If/when the proteins bind, the YFP halves may reunite and produce fluorescence. Can produce false negatives when proteins do interact, but no fluorescence is produced. It was used to determine that GID1 binds to GAI only in the presence of GA. Used for hybrid screening.
Term
Biological replicate
Definition
Often a single individual. When all biological replicates are combined, the mean value represents the population.
Term
Birch
Definition
Bark is white to keep the tree from thawing during warm weather. Minimizes damage of freezing/thawing. You can kill a birch tree by removing its bark.
Term
BRANCHED FLORETLESS 1
Definition
The AP2 ortholog in corn.
Term
Brassinosteroids
Definition

One of the Big 5.

Involved in photomorphogenesis and germination reponses to light. Positive regulators for senescence. Acts as a global regulator of leaf development.

Application accelerates senescence, and BR-deficient mutants have delayed senescence. BR-insensitive Arabidopsis mutants have prolonged life span. Mutants include bri1 - 5.

Term
BRI1 - 5
Definition
Brassinosteroid genes. Mutants have no elongated petioles, and cover less surface area, with light green colour in leaves.
Term
Buddha's hand
Definition
A deformation in the fruit of the gourd family that occurs when cytokinins are overactive in the fruit. It gets "cancer". The fruit has long appendages like fingers.
Term
C
Definition
Genes in the ABC model. Inhibit A, and are inhibited by A. Defined as a boundary, held back by A. Alone it produces pistils. Together with B, it produces stamens. Required for gamete production. If you remove C, A takes over its domain and the flower develops only sepals and petals, without stamens or pistils. The mutation is "lethal"; the plant cannot produce gametes and is completely sterile. Some C mutations are found in commercial orgnamental flowers. Includes AG.
Term
Callus
Definition
An undifferentiated clump of cells. Plant cells grow as a callus in tissue culture without bacterial infection. A certain number of cells are needed to produce a plantlet. Hormone balance is controlled to produce shoots and roots. If cytokinin and auxin are equal, the callus remains callus. If cytokinin is greater than auxin, shoots form. If auxin is greater than cyotkinin, roots form. Shoots are generally formed before roots, because the leaves can contribute to internal energy production. A callus can be used to produce thousands of clones. Some plants are resistant to cloning from a callus.
Term
CAm metabolism
Definition
Stomata are open in the night, and closed in the day. ABA stays in the roots, leading to shedding of root hairs. The roots cut anything off which is not coated in suberin. Can survive extreme drought. Includes cacti.
Term
Cambial cell
Definition
Vascular precursor cells that produce secondary growth. Includes ray initials or fusiform initials. Differentiate into either xylem or phloem; these always differentiate on different planes from each other.
Term
Canalize
Definition
Create a channel for.
Term
Cannabis
Definition
Propagated by calluses, to clone the plants. Cuttings from adult plants experience telomere depression after a few generations. Using a callus resets the telomeres.
Term
Carl Linnaeus
Definition
First described a naturally occurring mutant of toadflax that produced radially symmetrical flowers rather than bilaterally symmetrical flowers.
Term
Carnation
Definition
Commercial varieties have C gene mutations, so the flower forms only sepals and petals.
Term
CAULIFLOWER (CAL)
Definition
Encodes a MADS-box transcription factor. Produces meristem identity. Expressed in the floral meristem.
Term
Cherry tomato
Definition
A tomato with a mutation in cell expansion during fruit ripening. The fruit remains small, and ripens while still small.
Term
Chromatin remodeling
Definition
Stable changes in chromatin structure. Vernalization causes chromatin of FLC to become heterochromatin, effectively silencing the gene.
Term
Circadian clock
Definition
An internal oscillator that tells the plant the time of day. Humans have a circadian clock, entrained to sunlight. Plants use it to prepare for mornign and night, so not to waste light-harvesting machinery, entrained by phytochromes and cryptochromes.
Term
Citrus
Definition

Citris sp.

A woody plant with a juvenile period of 5 - 8. The plants have a pleasing smell.

Term
CK oxidase (CKX)
Definition
Converts active cytokinin into inactive cytokinin. Cytokinin promotes its activity. Has a negative feedback loop with IPT.
Term
Climacteric
Definition
Fruits that show respiratory increase and a spike in ethylene production during ripening. Treating mature fruits with ethylene accelerates ripening. Includes apples, bananas, avocadoes, and tomatoes.
Term
Clock hypothesis
Definition
Photoperiodic time-keeping depends on an endogenous circadian oscillator, coupled to various physiological processes that involve gene expression, including flowering.
Term
Cocklebur
Definition
A short-day plant. Photoperiod experiments were done on it in 1919. Flowers if just one leaf is exposed to short-day stimulus.
Term
Coincidence model
Definition
The circadian oscillator controls the timing of light-sensitive and light-insensitive phases. These phases continue to oscillate in darkness. Ability of light to promote or inhibit flowering depends on the phase in which the light is given. Flowering occurs when appropriate light exposure is coincident with the appropriate phase in the rhythm.
Term
Collateral bundles
Definition
A type of vasculature pattern. Vascular bundles surround a pith, with xylem towards the centre and phloem towards the outside.
Term
Competent
Definition
Receptive to floral stimulus. If the SAM is not competent, no amount of floral signal can induce flowering.
Term
CONSTANS (CO)
Definition

A key component in the regulatory pathway that promotes flowering in Arabidopsis in long days, affected by photoperiod and the circadian clock. Encodes a zinc finger transcription factor. Expressed mostly in phloem companion cells in leaf veins. Expression is controlled by the circadian clock, with a peak in mRNA 12 hours after dawn. The CO protein is degraded in the dark, and stable in light. When expression coincides with light, CO accumulates, inducing long-day flowering in Arabidopsis. Promotes expression of FT by directly activating gene expression in the leaf.

Mutants are incapable of photoperiodic flowering response, and have late flowering in long-day conditions (inductive).

Term
Constitutive GA response mutant
Definition
Plants are very tall with slender, spindly bodies. There is an absence of the repressor of GA.
Term
COP1
Definition
Ubiquinates light proteins for degradation, directing them to proteasome 26S.
Term
Corn
Definition

Monoecious plants. Originated in Central America. Modern corn is the product of thousands of years of selection by Native Americans. Commits all of its energy into one shoot. Modern corn grown in higher latitudes needs to be less dependeng on photoperiod to induce flower; evolved from short-day plant into a day-neutral plant.

There are over 70,000 varieties of corn, each adapted to local photoperiod conditions. Two very similar-looking varieties can differ by up to 50% of their genomes.

Sometiems seeds can germinate on the ear without a vp1 mutation, if the ear is wet. We have selected for plants that germinate easily for agronomic reasons.

GA deficient mutant corn generally produces anthers in the normally femal flowers of the ear; ther eis no separation of male and female flowers. Application of GA to wild-type corn causes female flowers to form in the normally male flowers of the tassel. Sometimes deformed flowers like this can form in tillers, half tassel and half ear.

Flowers after a certain number of leaves have formed, but if you remove the SAM at this point and graft it to a shorter plant, it won't flower until all the leaves have formed again.

Term
Corn smut
Definition
A delicacy in Mexico. Infects the endosperm, causing excessive reproductive growth, forming a massive black kernel with an earthy flavour.
Term
Cotton
Definition
Picked either by hand, or with expensive equipment. Normally has shallow roots and is not drought resistant. Fibres are derived from trichomes. Auxin has a role in trichome production, but is not the driver of this process. Cytokinin is added to seedlings or your plants to increase roots, increasing yield by over 10% during droughty years. In wet seasons, yield is reduced by cytokinin application; there is less shoot growth.
Term
CPK10
Definition
An abscisic acid gene. Mutants have no drought response; leaves do not curl, stomata do not close, and instead water is lost and the plant dies.
Term
CRE1
Definition
CRE was first discovred in the Arabidopsis mutant, which cannot respond to CK in tissue culture; there is no shoot formation with CK. Corresponds with the previously identified gene WOODEN LEG (WOL).
Term
CRISPR
Definition
The biggeste technique being used right now. The wave of the future.
Term
Critical day length
Definition
The day length which must be exceeded in order to induce flowering in long-day plants, or the day length which the days must be less than in order to induce flowerin in short-day plants. Its value varies among species.
Term
Crop rotation
Definition
A traditional crop rotation includs fallow, a legume crop, followed by one to two years of grain crops. The legume crop enriches the soil.
Term
CRT1
Definition
Inhibits ethylene response. If eliminated, ethylene response is constitutive.
Term
Cryptochrome
Definition
Activated by blue light. Controls circadian rhythms.
Term
CONSTITUTIVE TRIPLE RESPONSE (CTR)
Definition
Mutants have constitutive triple response; grow as though they are always exposed to ethylene. This mutation can be recoverable. The key gene in Arabidopsis is CTR1.
Term
Cut flowers
Definition
Cutting a flower causes ethylene production and leaf senescence, decreasing shelf life of flowers. Ethylene is inhibited with silver nitrate.
Term
Cyclin D3
Definition
A gene controlled by the transcription factor ARR in the cytokinin phosphorylation cascade. Controls cell division. In this way, cytokinin induces cell division.
Term
Cytokinin
Definition

One of the Big 5. Found at highest concentration at the tips of the root and shoot. Inhibits GA, ABA, and auxin. Promotes GA 2 oxidase. Promotes ethylene. Cytokinin receptors are a multi-gene family; there are three genes in Arabidopsis. Derived from adenine nucleotide precursors, catalized by IPT. Levels are controlled by feedback mechanisms. An inactive form is stored in the plant for rapid responses.

The most applied plant hormone in agriculture; very valuable. Used to increase cell mass in calluses, allowing for other hormones to function. Most species need added cytokinin to produce a callus.

Stimulates cell division. Has roles in SAM formation, leaf senescence, apical dominance, root nodule formation, and lateral root formation. Its presence in tissues causes the tissue to be a nutrient sink.

Delays leaf senescence. Levels decrease in mature leaves, or leaves severed from plants. Exogenous application to leaves causes "green islands". Can be applied to leaf crops such as tobacco or lettuce to keep leaves green longer. This response is universal in all plants.

In root nodule formation, it causes root hairs to grow and become infected with bacteria.

Inhibits lateral root formation directly and indirectly.

Excess CK increases cell division in the floral meristem.

Cytokinin mutants are dwarfs.

Term
Cytokinin receptor (CRE)
Definition
Binds to CK, and initiates a phosphorylation cascade. A phosphate group is added to AHP.
Term
D1
Definition
A GA1 ortholog in corn. Mutants lack GA 3 oxidase.
Term
DAPI
Definition
Stains the nucleus blue. Shows where the reaction occurs.
Term
Dawn redwood
Definition
Drops needles in the winter. A gymnosperm, but not an evergreen. A very old species.
Term
Day netural plants (DNP)
Definition
Plants which flower regardless of day length. Flower under any photoperiodic condition. Insensitive to day length. Flowering is under autonomous regulation. May have evolevd near the equator where day length is constant. Plants lose out on potential vegetative growth by flowering at a set day. Includes kidney bean, desert paintbrush, and desert sand verbena.
Term
Day-neutral strawberries
Definition
Produce strawberries all throughout the summer. Don't taste as good as June-bearing strawberries.
Term
DEFH49
Definition
An SEP ortholog in Antirrhinum.
Term
DEFH72
Definition
An SEP ortholog in Antirrhinum.
Term
DEFH200
Definition
An SEP ortholog in Antirrhinum.
Term
Deficient mutant
Definition

Production mutant

Can be rescued. A mutant where production of a hormone is affected. Adding exogenous hormone rescues the mutant and restores wild-type phenotype. Mutant phenotype depends on the step of the proess which is mutated.

Term
DELLA protein
Definition
A well-characterized family of proteins. Binding to GA-GID causes conformational change in its N-terminal DELLA domain. inducing conformational change in the GRAS domain. The F-box binds to it after this change, and is degraded by polyubiquination. Has a negative feedback loop. The more receptor is rpesent, the more sensitive the cell is to GA.
Term
Depolarization
Definition
ABA causes membrane depolarization of guard cells by elevating cytosolic calcium, by triggering transient influx of Ca2+ ions and promoting release of Ca2+ from internal stores. Increase in calcium in the cytosol opens calcium-activated ion channels on the plasma membrane. K+ influx channels are opened.
Term
Dicots
Definition
Vascular bundles are arranged in a circle in the stem.
Term
Dimitry Neljubov
Definition
Identified ethylene as a plant growth regulator in 1901. Demonstrated its ability to alter the growth of etiolated pea seedlings.
Term
Dioecious
Definition
Some plants have separate male and female plants, to prevent inbreeding.
Term
Dolly the sheep
Definition
A cloned sheep. Had a short lifespan, because her telomeres were short.
Term
Dormancy
Definition
ABA maintains seed and bud dormancy, and is oppositional to GA. There is a drop in ABA in late embryogeness, controlling the threshold of GA required for germination, and amount varies by species, controlling the sensitivity of the seed to environmental cues. Allows the seed to survive harsh conditions. Delays germination until chances for survival are better. In Arabidopsis, dormancy is broken by stratification.
Term
DR5/GUS
Definition
A blue reporter that shows auxin localization.
Term
Drought
Definition
ABA induces stomatal closure. ABA levels in leaves increase 50 times in response to drought. There is no "off switch"; ABA ceases synthesis to stop response. ABA synthesized in drying roots moves into the leaves via the xylem. Causes stomata to close to reduce water loss by transpiration. ABA  may travel up only certain xylem files on side of the plant, if only some roots are affected by drought, for example if some of the roots are exposed to air due to erosion.
Term
E
Definition
Genes in the ABC model. Promotes A, B, and C. Remove E, and all flower parts will develop as leaves. The number of floral organs is unchanged, but all develop into leaves. Includes SEP1 - 3.
Term
Eelgrass
Definition
A plant that lives underwater and has no stomata.
Term
EIN4
Definition
A class of membrane-bound ethylene receptor. When not bound to ethylene, it promotes CTR1 .When bound to ethylene, it inhibits CTR1.
Term
Enantiostyly
Definition
Styles that bend to prevent self-fertilization. Combination of elongation and cell division causes the bending, depending on species.
Term
Endogenous floral induction pathway
Definition

Developmental pathway

Includes plant size and age. Size is indicated by the physical size of the plant, and the nutrients available to the plant. Includes the autonomous pathways and the GA pathway.

Term
English ivy
Definition

Hedera helix

A woody plant with a juvenile period of 5 - 10 years. Produces leaves with different shape when it reaches reproductive phase.

Term
English oak
Definition

Quercus robur

A woody plant with a juvenile period of 25 - 30 years.

Term
Entrained
Definition
Synchronized to zeitgebers. The most important entrainment is to light and dark transitions at dusk and dawn.
Term
Environmental floral induction pathways
Definition
Includes photoperiod (light) and vernalization (temperature). Controlled by genes including CO, VRN1, VRN2, and VIN3.
Term
Epigenome
Definition
Stress-induced epigenetic changes that are mitotically and meiotically heritable. Imprinting on the DNA with methylation. Changes formation of histones, silencing genes. The "memory" of plants. Vernalization is a epigenomic effect. In mammals, epigenetics produces different cell types.
Term
Erwin Bünning
Definition
In 1936, proposed that the control of flowering by photoperiodism is achieved by an oscillation of phases with different sensitivities to light. This evolved into the coincidence model.
Term
Ethaphon
Definition
A non-naturally occurring chemical. A GA inhibitor. Out-competes GA, leading to reduced GA response. Inhibits plant growth. Applications can delay floral induction/opening. The amount of time that is effective is dependent on the species. Acts as ethylene in a plant. Used in agriculture.
Term
Ethylene (C2H4)
Definition

One of the Big 5. A small molecule. A gaseous hormone with rapid diffusion. Found at highest concentration at ground level. Levels fluctuate in circadian rhythm. Autocatalytic production: positive feedback loop, with addition of ethylene leading to increased production of ethylene. Promotes production of ACS, producing this positive feedback loop. Synthesized from methionine. Oppositional to GA. Inhibits ABA. Activity is antagonized by auxin. Tomatoes release ethylene. Used in grocery stores to ripen fruit.

Involved in fruit ripening, senescence, and abscission, root hair development, promoting germination, and leaf abscission. There is a threshold for ethylene sensitivity.

In leaf abscission, lower auxin in older leaves leads to higher ethylene, inducing cell wall degradation enzymes in the abscission layer.

Term
Ethylene response factor 1 (ERF1)
Definition
A transcription factor induced by ethylene. Activation serves to alter the expression of a large number of genes, bringing numerous changes in function of plant cells in response to ethylene.
Term
ETHYLENE OVERPRODUCER (ETO)
Definition
Mutants show triple response in air, and overproduce ethylene.
Term
ETHYLENE RESISTANT (ETR)
Definition
Mutants are ethylene resistant, and have normal response in the presence of ethylene. There are five genes in this family in Arabidopsis: ETR1, ETR2, ERS1, ERS2, and EIN4. All are membrane-bound ethylene receptors. They have redundant function: all three families need to be eliminated to see effect of a mutant. If mutated so that they cannot bind to ethylene, it will promote CTR1 constitutively, causing ethylene insensitivity, and only one mutation is needed for this, and even heterozygotes can have a phentoype.
Term
ETR1
Definition
A class of membrane-bound ethylene receptor. When not bound to ethylene, promotes CTR1. When bound to ethylene, inhibits CTR1.
Term
ETR2
Definition
A class of membrane-bound ethylene receptor. When not bound to ethylene, promotes CTR1. When bound to ethylene, inhibits CTR1.
Term
European beech
Definition

Fagus sylvatica

A woody plant with a juvenile period of 30 - 40 years.

Term
Facultative
Definition
Short or long-day plants where photoperiod speeds up flowering, but flowering will occur eventually regardless of day length.
Term
FAMA
Definition
A regulator of stomatal cell fate. Involved in the last stages of guard cell development. Has the motif LxCxE. In loss-of-function mutants guard cells continue to divide after development. In gain-of-function mutants, guard cells have no final division, and there is one guard cell per stomata.
Term
FARINELLI
Definition
An AG ortholog in Antirrhinum.
Term
Fascicular cambium
Definition
A region of vascular cambium derived from the procambium. Developed in original vascular tissue during primary growth. Radial differentiation gives rise to the full range of xylem and phloem cells.
Term
FCA
Definition
Controls autonomous floral induction pathways in Arabidopsis. Inhibits FLC.
Term
Flavonoids
Definition
Inhibit auxin polarization.
Term
Flavour
Definition
A combination of taste, texture, and smell.
Term
Floral evocation
Definition
The process by which the SAM becomes committed to forming flowers.
Term
Floral induction
Definition
A two-component system with a signal generator (leaves), and a signal receiver (SAM). There are environmental and endogenous pathways that both contribute to floral induction.
Term
Floral meristem
Definition
Produce flowers. Arise on the flanks of the inflorescence meristem and secondary inflorescence meristem in Arabidopsis.
Term
Floral organ identity genes
Definition
Genes that regulate floral development. Directly control floral organ identity. Encode transcription factors that interact with other protein cofactors to control expression of downstream genes with products involved in formation or function of floral organs.
Term
Floral stimulus
Definition

Floral inductive signal

Originates in the leaves, and targets the SAM. The floral stimulus is induced in response to environmental and/or genetic factors.

Term
FLORICAULA (FLO)
Definition
The LFY ortholog in Antirrhinum.
Term
Florigen
Definition
A term coined by Mikhail Chailakhyan. The flower-promoting "hormone". A chemical which moves from leaves to apex, causing floral induction. It was unknown for a long time, then it was discovered to be a protein: a cofactor floral transcription factor, FT. Made in leaves and moves through the phloem to the SAM to inhbit FD, which normally acts as an inhibitor to flowering. There are other chemicals which may act as florigens. Its effects are universal.
Term
Flower
Definition
The reproductive structure. May attract pollinators. Great diversity in floral structure. Some are wind pollinated, and otherss require pollinators. Has four primary whorls: sepals, petals, stamens, and pistils. A fruit forms around the seeds.
Term
Flowering
Definition
A transition from vegetative growth to reproductive growth. Factors may be environmental, genetic, and are translated by the plant into physio-chemical signals to the meristem. Leaves must synthesize florigen, and the shoot apex must be competent to respond to it. The SAM is not pre-programmed to flower. The meristem changes shape to make petals and floral structures. A terminal change, however some plants can reverse the process.
Term
FLOWERING D (FD)
Definition
Encodes a basic bZIP leucine zipper transcription factor, expressed in the shoot apex. Forms a complex with FT, and the complex activates floral identity genes, including AP1, SOC1, and LFY.
Term
FLOWERING LOCUS C (FLC)
Definition
A gene found only in Brassicaceae. Encodes a MADS-box transcription factor. A floral repressor. Expressed in the leaves and apex. Inhibits FT, inhibiting flower formation. Inhibited by the vernalization pathway and autonomous pathways. Inhibited by VRN1, VRN2, and VIN3. It is epigenetically silenced during vernalization. Mutants in Arabidopsis have early flowering in short-day conditions (non-inductive).
Term
FLOWERING LOCUS M
Definition
Encodes a MADS-box transcription factor. Represses flowering. Expressed in the leaves and apex.
Term
FLOWERING LOCUS T (FT)
Definition
It is "florigen". A small, globular protein. Relatively conserved across many taxa: conserved between monocots and eudicots. Expression is promoted by CO. Expressed in companion cells of leaf veins. Expression is induced differently in different species, by a range of floral inductive photoperiods. Moves from leaves to apical meristem to induce flowering by interacting with FD. Promotes floral meristem identity genes in the SAM. Mutants in Arabidopsis have late flowering in long-day conditions (inductive).
Term
Flowering mutants
Definition
Flower either too early or too late. Used in genetic analysis of flowering time.
Term
Flowering time
Definition
Flowering too early or too late is not advantageous. Delaying flowering increases carbohydrate reserves that will be available for mobilization, allowing for more and better seeds, but also increases risk of herbivory, abiotic stress, and out-competition with other plants. Plants must adapt to different latitudes, as plants migrate across their adaptive walk. Plants are fine-tuned to their local areas. There are over 20 flowering time mutants in Arabidopsis.
Term
Foolish seedling
Definition

Gibberella fujikuroi

A fungal disease in rice, that lead to the discovery of gibberellin. There is increased growth in seedlings.

Term
Free-running
Definition
When zeitgebers are removed. The plant reverts to the circadian period that is characteristic to the organism.
Term
Freezing
Definition
Has the same effect as drought, because it affects osmosis of water, and plants cannot sense or use water in the form of ice. When ice forms it can rupture lipid membranes.
Term
Freshwater algae
Definition
Compared to salt water, freshwater had the same effect as drought on early algae, predisposing them for adaptation to land, which is salt-free, and relatively dry. Land plants evolved from freshwater algae.
Term
Fruit
Definition
Its purpose is to be consumed, so that seeds may be deposited in feces. This is how fruit initially developed a relationship with humans. Plants benefit from having good-tasting fruit to attract animals. Humans have altered fruits by selection. Dwarf trees are used, which are short and easier to harvest.
Term
FRUITFULL (FUL)
Definition
Encodes a MADS-box transcription factor. Expressed in the floral meristem and cauline leaves.
Term
GA1
Definition
An active form of gibberellin. Promotes growth.
Term
GA3
Definition
An inactive form of gibberellin.
Term
GA8
Definition
An inactive form of GA.
Term
GA 2 oxidase
Definition
Converts GA1 into GA3, inactivating gibberellin. Conversion is inhibited by IAA. Early steps in the precursor molecule. Expressed in a zone around lateral organs, inactivating GA, preventing GA accumulation in the SAM.
Term
GA 3 oxidase
Definition
Converts GA20 into GA1. Conversion is enhanced by IAA. The last molecule before active gibberellin.
Term
GA 3ox1
Definition
A gene which encodes for GA biosynthesis.
Term
GA 20ox1
Definition
A gene which encodes for GA biosynthesis.
Term
GA 20ox2
Definition
A gene which codes for GA biosynthesis.
Term
GA insensitive
Definition
GA response mutants. Defective in signal transduction. Two types: GA insensitive dwarf and constitutive GA response mutant.
Term
GA insensitive dwarf
Definition
Plants are dwarfs with short, compact bodies. There is a mutation in the repressor of GA, so that it cannot bind to GA.
Term
GA rescues
Definition

ga1 mutants

A mutant in biosynthesis of GA1. A mutation in GA 3 oxidase. Can be rescued by adding GA.

Term
GAD1b
Definition
A gene which codes for GA biosynthesis.
Term
GA floral induction pathway
Definition
An endogenous floral induction pathway. GA promotes floral meristem identity genes. Regulates miRNAs in the meristem. Can bypass other floral induction pathways, especially in flowering mutants.
Term
GAI
Definition
Encodes GAI repressor. Belongs to the DELLA family. The mutant version encodes an altered protein that does not perceive GA signal; repressor that cannot bind to GA.
Term
GAI repressor
Definition
Encoded by the GAI gene. A DELLA protein. Stops the expression of growth genes be affecting transcription. Inhibited by GA. Binds to GID1 only in the presence of GA. Actiaves pathways that destroy GAI. Inhibit pathways that reduce destruction of GAI. Variants make rice plants shorter.
Term
Gibberellin (GA)
Definition

Gibberellic acid

One of the Big 5. A large group of chemically related compounds. Most forms in plants are inactive intermediates of GA synthesis. Discovered in Foolish seedling fungal disease. Found at highest concentration at ground level. Absent from the SAM, but there is some inactive GA in the SAM. Most is synthesized in apical tissues. Light can regulate biosynthesis. Transported in the phloem if made in the shoot (non-polar). Transported in the xylem if made in the root. Inhibits ABA. Inhibited by CK. Promotes auxins. Oppositional to ethylene.

Involved in stem growth (cell elongation), seed dormancy and germination, flowering time, flower development, fruit set, and leaf senescence.

Inhibits seed dormancy, and promotes seed germination. Light induced germination activates GA production. Exogenous GA can activate seed germination in the dark. Has stand-alone activity in flowering in germination.

Represses senescence; active forms decline in leaves as they developmentally age.

Applying GA to plants can increase yield.

Term
GIBBERELLIN INSENSITIVE DWARF 1 (GID1)
Definition
An allosteric protein. A GA receptor. Binds to GA, causing conformational change that leads to extension switch closing like a lid. Binds to GAI only in the presence of GA, and targets GAI for degradation. Rice has one GID1 receptor, and Arabidopsis has three, but the triple-mutants have exaggerated dwarf phenotype.
Term
GID1a
Definition
A gene which codes for GA biosynthesis.
Term
Global warming
Definition
As the climate changes there will be need for more drought tolerant varieties, with ABA hypersensitivity or overproduction; highly responsive to drought stress, but not a constitutive response.
Term
GLOBOSA
Definition
The PI ortholog in Antirrhinum.
Term
GLOSSY15
Definition
An AP1 ortholog in corn.
Term
Glucosidase
Definition
Converts inactive storage cytokinin into active cytokinin. Very important for plant growth.
Term
Glucosyltransferase
Definition
Reversibly converts active cytokinin into inactive storage cytokinin.
Term
Glycerol
Definition
Prevents ice crystal formation in cells.
Term
Glycoside
Definition
One of the forms of cytokinin present in plants. A sugar molecule is attached to the 3, 7, or 9 nitrogen of the purine ring, or to the oxygen of the zeatin or dihydrozenatin side chain.
Term
Glyphosate
Definition
LD50 in plants is 4300 mg/kg. LD50 in humans is 301 g.
Term
GNOM
Definition
Required for PIN1 localization. Mutants have PIN1, but do not establish any polarity.
Term
Goldenrod
Definition
Often confused for ragweed. Wasps may lay a single egg inside the stem. The wasp embryo sends a signal leading to excess cytokinin production, leading to formation of a gall around the wasp embryo. In the winter, it sends a signal to produce glycerol, which is an antifreeze that protects the embryo.
Term
Goldfish
Definition
You can slowly freeze a goldfish, and then thaw it out of the ice and it will still be alive!
Term
Golf course
Definition
Have less restrictions on herbicide use than residences, despite normally using much more herbicides than any residence.
Term
Grafting
Definition
Treating individual organs to specific photoperiods. Discovered that the leaf responds to photoperiod, not the SAM. Grafting a leaf grown under floral-inductive conditions onto a plant in non-inductive conditions can lead to floral induction. Experiments show that floral stimulus originates in leaves, and lead to the idea of florigen.
Term
Grape
Definition

Vitis sp.

A woody plant with a juvenile period of 1 year. ABA is added to make grapes a deep red colour.

Term
GRAS
Definition
Interacts with DELLA proteins to make an active form of GID1. Targeted by the F-box for ubiquination.
Term
Gravitropism
Definition
In the shoot, statoliths in the starch sheath sense gravity for negative gravitropism. In the roots, statoliths in the columella sense gravity for positive gravitropism. Movement of statoliths within cells signals for the redistribution of auxin. Gravitropism mutants are used to identify auxin transport proteins that regulate activity and distribution.
Term
Green revolution
Definition
Variants of GAI repressor genes in rice produced semi-dwarf varieties. This and other agricultural improvements increased yields.
Term
Greenhouse ornamental production
Definition
Delaying flowering is advantageous so that the plants flower in the store, not in the greenhouse. GA is applied to slow growth to allow for shipping time. This form of agriculture has the highest monetary return per square foot.
Term
Ground cell
Definition

Parenchyma

Differentiates into a procambial cell.

Term
Growth ring
Definition
New layers of xylem are laid down every year in a tree. Can be used to track cliate change events through time. Can see when/where mechanical stresses occurred, including wind from bodies of water. The masts of ships preserved underwater can be analysed.
Term
Guard cells
Definition
Open and close depending on ABA, light, CO2, and O2 levels.
Term
Gymnosperms
Definition
Have seeds, but no flowers.
Term
Habataki rice
Definition
A variety of rice with lower expression of CKX, leading to increased CK; causes more flowers and more grain yield. A dwarf variety.
Term
Haplostele
Definition
A type of vasculature pattern. Xylem is found in the centre, with phloem surrounding it.
Term
Heading-date 1 (Hd1)
Definition
A gene in rice homologous to CO. Inhibits Hd3a expression.
Term
Heading-date 3a (Hd3a)
Definition
A gene in rice homologous to FT. A strong promoter of flowering. Expression is elevated during inductive photoperiods.
Term
Heriloom varieties
Definition
Popular 100s of years ago, but are not very productive. May be crossed to produce agronomically valuable varieties. Generally have poor shelf life, but taste better.
Term
eme
Definition
A prosthetic group on a molecule that contains a metal ion. Found in blood hemoglobin of animals, and in chlorophyll and cryptochrome.
Term
IAA-
Definition
The charged form of auxin. Cannot pass through a membrane on its own Promotes activity of GA 3 oxidase, and inhibits activity of GA 2 oxidase.
Term
IAA28
Definition
Mutants have no apical dominance. Flowers appear from all lateral buds.
Term
IAAH
Definition
The uncharged form of auxin. Can pass through membranes. As it passes through the membrane, it loses the H, and becomes IAA-, thus trapping it in the cell.
Term
IEC1/SCREAM
Definition
A regulator of stomatal cell fate. SPCH, MUTE, and FAMA bind to it, which is required for transitions.
Term
Immunodetection
Definition
A method used to determine auxin levels in a plant. High sensitivity, medium specificity. Resolution is at the cellular level. Sensitivity depends on the accessibility of auxin to antibody binding and specificity of the antibody.
Term
Inductive photoperiod
Definition
The length of photoperiod that induces flowering. Depends on plant species. Some plants require only one inductive photoperiod, others require several.
Term
Insensitive mutant
Definition
Cannot be rescued with exogenous hormone application.
Term
Interfascicular cambium
Definition
A region of vascular cambium that arises de novo by recruiting interfascicular parenchyma cells as primary growth slows. Gives rise exclusively to structural interfascicular fibres.
Term
IPT
Definition

Isopentyl transferase

Inserted by the Ti plasmid of Agrobacterium tumefaciens. Encodes an enzyme that catalyzes the first step in the CK synthesis form nucleotide precursors. Leads to cell division, causing tumour formation. Plant cells grow into a callus. Cytokinin inhibits its activity. Has a negative feedback loop with CKX. A quadruple ipt loss-of-function mutant has reduced CK levels to less than 20% of the wild-type, and there is dramatically reduced shoot apical meristem and shoot growth, and enhanced root growth.

Term
Jasmonic acid
Definition
One of the Big 5. Involved in insect herbivory. Exogenous application stimulates leaf senescence, and controls expression of a series of senescence-related genes. Older leaves have higher levels of JA.
Term
Johann Wolfgang von Goethe
Definition

1742 - 1832

A German poet and natural scientist. First speculated that floral organs were highly modified leaves.

Term
June-bearing strawberry
Definition
Produce strawberries only during a specific tim of the summer. Taste better than day-neutral strabwerries.
Term
Kinetin (KIN)
Definition
Synthetic CK. Affects cell divisions, causes GA treatment to make the plant more robust. Cheap to produce. Lasts longer on a plate.
Term
Kiwi
Definition

Asian gooseberry

The word "kiwi" was developed for marketing. The plant is a C gene mutant, with flowers that produce only petals and sepals. The fruit develosp from parthenocarpy and lacks seeds.

Term
Lateral auxin redistribution
Definition

Auxin accumulates on the lower side of roots; inhibiting cell elongation, causing the roto to bedn downwards.

1. Auxin is produced at the growing apex.

2. Stimulus of light or gravity indicates orientation.

3. Auxin is redistributed laterally.

Term
LE
Definition
The ortholog of GA1 in peas. Mutants lack GA 3 oxidase.
Term
Leaf abscission
Definition
Phases include leaf maintenance phase, abscission induction phase, and abscission phase. If auxin flow in a leaf is disrupted, such as by wounding, it is abscised because it would take a lot of energy to repair the damage, and there is risk of infection. Irreversible.
Term
Leaf maintenance phase
Definition
A phase of leaf abscission. High auxin from th eleaf reduces ethylene senstivity in the abscission zone, preventing leaf abscission.
Term
LEAFY (LFY)
Definition
Encodes a LFY transcription factor. A floral meristem identity gene. Expressed in the shoot apex.
Term
Lethal mutation
Definition
Some genes are so necessary to plant survival, that not even heterozygotes of a mutation are viable.
Term
Linseed oil
Definition
Addition of auxin and GA increase linseed yield.
Term
Lipid
Definition
The most energy-dense form of energy. Found in seeds. Converted into sugars.
Term
Location-based differentiation
Definition
Plant cells differentiate based on position, not lineage. Allows plants to recover from wounds.
Term
Long-day plant (LDP)
Definition
Plants that flower only in long days, or flowering is accelerated by long days (obligate or facultative). Need a certain day length to flower. Have vegetative growth in short-day conditions, and flower in long-day conditions.
Term
Long-short-day plants (LSDP)
Definition
A dual-day length plant. Flower only after a sequence of long days followed by short days. Includes Bryophyllum, Kalanchoe, and night-blooming jasmine. Flower in the late summer and fall, when days are shortening.
Term
Lychee
Definition
Application of auxin results in induced flowering, increased fruit set, reduced drop rate, and decreased fruit abscission (breaking of fruit leads to increased infections). Normally lychee trees will not flower if there is rainy weather. Auxin can induce fruit set by parthenocarpy.
Term
MADS box genes
Definition
A large family of homeotic genes in plants. The acronym is based on the four founding members: MCM1, AGAMOUS, DEFICIENS, and SRF. Have a characteristic, conserved sequence, the MADS box, encoding MADS domain protein structures. MADS transcription factors form tetramers that bind to CArG-box DNA sequences: CC(A/T)6GG.
Term
Malt
Definition

Sprouted seeds

Used in beer making. Gaseous GA is used to induce aleurone cells in the seeds to express hydrolases, which break down starches and proteins. The applied GA synchronizes germination, to maximize enzyme levels when it is added to the beer. Starch is broken into sugars by the enzymes, and the sugars are converted into alcohol by yeast.

Term
Maryland Mammoth
Definition
A mutant tobacco plant. A flowering time mutant; it fails to flower in long days, and has extended vegetative growth, producing an enormous plant.
Term
Mass spectroscopy
Definition
A method used to determine auxin levels in a plant. Medium sensitivity, and high specificity. Resultion is at the tissue or organ level. Can discriminate between different forms of auxin.
Term
Master control gene
Definition
Mutants of these genes have very strong detrimental phenotypes that do not require other mutations.
Term
Metaxylem tracheary elements
Definition
Tracheary elements with pitted or reticulate patterns of secondary wall deposition. Does not allow continued cell elongation.
Term
Mikhail Chailakhyan
Definition
In the 1930s in Russia, postulated the existence of a universal flowering hormone, and coined the term "florigen".
Term
Monocots
Definition
Vascular bundles are arranged randomly in the stem. No secondary growth; no wood is formed. Vasculature predisposes evolution of C4 metabolism.
Term
Morning glory
Definition

Ipomea nil

An obligate short day plant. Takes only one short day to induce flowering. You can cover the plant with an opaque tarp to induce flowering.

Term
MP
Definition

Auxin response factor 5

A transcription factor. Phosphorylates PIN1, giving it energy for transport.

Term
MUTE
Definition
A regulator of stomatal cell fate. Encodes a transcription factor.
Term
Night break
Definition
An interruption of the dark with a short exposure to light. Night breaks of a few minutes are effective in preventing flowering in SDPs, but longer night breaks are required to promote flowering in LDPs. Night breaks are most effective in the middle of the dark period. Night breaks are sensed by phytochrome, as Pr is converted into Pfr; this is a high-irradiance response.
Term
Non-climacteric
Definition
Fruits that do not have changes in respiration and ethylene during ripening. Ethylene is not required for ripening. Includes grapes, citrus fruits, and strawberries.
Term
NOTABILIS
Definition
A gene in tomatoes. Mutants are ABA deficient, and have reduced drought resistance; will wilt in mild drought. Can be rescued from drought by adding ABA.
Term
NPA
Definition
An auxin efflux inhibitor. Inhibits phototropic response to blue light.
Term
Nucleotides
Definition
The precursors for cytokinin biosynthesis. Always present in the cell.
Term
Obligate
Definition
Short or long-day plants that have an absolute day length required to flower.
Term
Oranges
Definition
Application of GA to ripening oranges delays fruit drop in order to synchronize harvest.
Term
Organic acids
Definition
Have a tart flavour. They disappear from fruits as they ripen.
Term
OsFD1
Definition
The FD ortholog in rice.
Term
Paraquat
Definition
LD50 in plants is 150 mg/kg. LD50 in humans is 10.5 g. It was used before GMOs. Less toxic to plants compared to glyphosate, so more of it is needed.
Term
Parthenocarpy
Definition
Formation of fruit without fertilization, and without seeds. May occur naturally, or be induced by exogenous GA. Abnormal flowers may form with no anthers, or other floral organ identity mutations, depending on the part of the plant from which the fruit forms. The plant receives a signal that it normally gets from an embryo, so it produces a fruit. No resources are put into seeds, so more is available for fruit growth. Produces large, seedless fruits. It is difficult to select for natural parthenocarpy.
Term
Patent
Definition
You can patent a mutation in a gene if it is not naturally occurring, and if it is not the wild-type.
Term
Perilla crispa
Definition
A short-day plant.
Term
Period
Definition
A parameter that defines circadian rhythms. The time between comparable points in the repeating cycle. Typically meausred as the time between consecutive maxima or minima.
Term
Petal
Definition
One of the primary floral whorls. Conspicous and decorative.
Term
Pfr
Definition
Phytochrome that absorbs far-red light.
Term
Phase
Definition
A parameter that defines circadian rhythms. Any point in the cycle recognizable by its relationship to the rest of the cycle. The most obvious phase points are peak and trough positions.
Term
Phase change
Definition
The transition from one phase to another during plant development.
Term
Phenotypic plasticity
Definition
Plants can alter their phenotype. Can result in adaptive anatomical changes that enable plants to avoid some harmful effects of abiotic stress. Example: ability to alter leaf shape.
Term
Phloem
Definition
A component of vascular tissue. Nutrients are transported from source tissue to sink tissue. Matue cell types are sieve tube elements, phloem companion cells, and phloem fibres. Less is known about developmental commitment compared to xylem.
Term
Phloem companion cells
Definition
A phloem cell that is cytoplasmically coupled to sieve elements by plasmodesmata. Maintains metabolic competency of sieve tub elements. Loads molecular cargo onto sieve tube elements.
Term
Phloem fibres
Definition
Phloem cells found in many cases.
Term
Photoperiod
Definition
The length of day and night. Tells the plant the time of year. A perfect predictor; it is the same every year. Plants use it to control flowering and leaf senescence. Photoperiod-inducible plants lead to experiments aimed at determining the nature of floral inductive signals, including photoperiod experiments and grafting. The leaf responds to photoperiod, not the SAM.
Term
Photoperiodic induction
Definition
Photoperiod-regulated processes that occur in leaves, resulting in transmission of floral stimulus to the shoot apex. Can take place in a leaf that has been separated from the plant.
Term
Photoperiodism
Definition
In the 1920s it was discovered that plants would flower only when days were a certain length. Plants tell the time of year using photoperiod to determine the best time to flower. Makes it possible for a developmental event such as flowering to occur at a particular time of the year, allowing for seasonal responses.
Term
Phytochrome
Definition
In Arabidopsis, four are involved in clock entrainment. Each acts as a specific photoreceptor for red, far-red, or blue light.
Term
PHYTOCHROME INTERACTING FACTOR 4 (PIF4)
Definition
Encodes a bHLH transcription factor. Activates florigen in response to high temperatures. Expressed in the leaves and apex.
Term
PID
Definition
A kinase that regulates PIN1 transporter.
Term
PIN
Definition
Encodes auxin efflux proteins. Named for pin-formed mutants.
Term
PIN auxin efflux carrier protein
Definition
It is polarly localized; present on the plasma membrane at only one end of the cell. Auxin uptake into the cell and efflux give rise to net polar transport.
Term
PIN localization
Definition
A method used to determine auxin levels in plants. Medium sensitivty, medium specificity. Resolution is at the cellular level. Polarized distribution of PIN1 and PIN2 auxin transporters are used to infer directional auxin flow.
Term
PIN1
Definition
A gene with some master control function. Encodes PIN1, an auxin transporter localized to the basipetal cell membrane, mediating vertical auxin transport downwards. An active symporter: H+ is trnasported into the cell as well as IAA-. Must be phosphorylated to work. Regulated by PID. Mutants have pin-formed phenotype, with abnormal leaves and bare inflorescence.
Term
PIN2
Definition

EIR1

Mutants have no sense of gravity. If you rotate the plant, there is no response.

Term
PIN3
Definition
Encodes an auxin efflux protein that moves auxin downwards and towards the vascular bundles.
Term
Pine
Definition
Trees that can have only one dominant meristem. If there is a weevil infection and the SAM is eaten, a single lateral meristm becomes dominant. Seeds germinate after heating. Adapted to fire cycles of boreal forests; pine codes in burning trees are activated by the heat.
Term
Pineapple
Definition
If there is cold weather, some flowers may begin to flower while others do not; this can be beneficial to small-scale producers. Ethylene inhibitor may be added to the flowers to prevent flowering, and ethylene is then added to synchronize the flowering, so that pineapples can be harvested all at once; beneficial to large-scale producers.
Term
Pistachio
Definition
Cytokinin is applied at flowering, to increase floral number, and to revive old buds. Cytokinin is not normally found at high levels during flowering; it is made in seeds. Only applied to older trees; younger trees do not need it.
Term
Pistil
Definition

Gynoecium

One of the primary floral whorls. The female organs of the flower. Contains ovaries.

Term
PISTILLATA (PI)
Definition
Encodes a MADS-box transcription factor. A class B homeotic gene. Expressed in whorls 2 and 3.
Term
Plant
Definition
Nutrients are in short supply, not energy. Plants recycle all materials.
Term
Plant cells
Definition
Mature, differentiated cells can resume cell division, induced by wounding or insect gall formation. Unique structures can form.
Term
Plant hormone
Definition

Growth regulators

The "brain" of the plant. Some hormones are taxa-specific. All plant hormones are unique to plants, and evolved as plants became multicellular. The relative balance of hormones controls cell differentiation, division, and elongation. Usually act in combination with other hormones, and affect each other's expression. Interactions are complex, and much is still unknown. Synthesized in one part of the plant, and move or are transported to another part to affect development changes or responses to environmental signals. Allows for long distance signalling between plant parts to coordinate growth. Interactions produce problem solving and reactions to stimuli, adaptation to the environment, and preparation for the future. Includes the Big 5. 

Term
Plectostele
Definition
A type of vasculature pattern. Random arrangement of xylem and phloem.
Term
PLENA
Definition
An AG ortholog in Antirrhinum.
Term
Point of no recovery
Definition
The point in a drought where the plant can no longer recover, if the drought should end. Depends on species and variety.
Term
Pr
Definition
Phytochrome that absorbs red light.
Term
Primary inflorescence meristem
Definition
The meristem of Arabidopsis after it has transitioned from vegetative to reproductive growth. It produces an elongated inflorescence axis bearing cauline leaves and flowers. Has the potential to grow indefinitely.
Term
Procambial cell
Definition
Vascualr precursor cells that can arise de novo through differentiation of ground parenchyma cells. Creates cell files of cambial cells. Differentiate into either xylem or phloem. Auxin determines differentiation. Parenchymal cells committed to procambial cell fate are elongated and alinged in discrete cell files. Undergo periclinal division to form procambium tissue that specializes into xylem and phloem. In rapidly expanding organs, some vascular cambium cells remain undifferentiated.
Term
Protoxylem tracheary element
Definition
Tracheary elements formed during primary plant growth. Deposits localized or helical secondary wall thickenings, allowing the cell to elongate in actively growing areas of the plant.
Term
PYR/PYL/PCAR
Definition
Members of the START domain protein superfamily. Contain a predicted hydrophobic ligand-binding pocket. Constitute the initial step of teh core ABA signal transduction pathway. There are fourteen members of this subfamily in Arabidopsis.
Term
Quartet model
Definition
Tetramers of combinations of ABCE genes bind to DNA to specify floral organs. Based on the observation that MADS box genes dimerize, and the two dimers form tetramers.
Term
RBR
Definition
Prevents cell divisions. Binds to FAMA so that it may be directed where to bind in the genome. If you prevent it from binding to FAMA, stomata will form within larger stomata; the pathway continues after stomata have developed.
Term
Redwood
Definition

Sequoia sempervirens

A woody plant with a juvenile period of 5 - 15 years.

Term
Reporters
Definition
A method used to determine auxin levels in a plant. High sensitivity, high specificity. Resolution is at the cellular level. Indicates location of auxin-dependent responses, but reporter activity may be limited by other factors, such as artificial promoters (DR5, DII-Venus), or fusions with auxin-responsive gene promoters.
Term
Respiratory burst oxidase homolog D (RBOHD)
Definition
A specific NADPH oxidase located on the plasma membrane. Required for SAA.
Term
Response mutant
Definition
A mutant where response to a hormone is affected. Adding exogenous hormone cannot rescue the mutant, and it sill produce the mutant phenotype.
Term
Retinoblastoma (Rb)
Definition
A tumour-suppressing gene in animals that controls cell cycle, and recruits proteins for methylation and differentiation.
Term
Reverse genetics
Definition
Making a mutation, then screening for mutant phenotypes.
Term
RFL
Definition
The LFY ortholog in rice.
Term
Rice
Definition
Reponds strongly to GA. GA promotes elongation and submergence avoidance. As water levels rise, GA promotes rapid stem elongation to keep the plant above the water. Rice fields are flooded to keep out weeds; not necessary for rice growth. Includes semi-dwarf rice and super rice.
Term
Ripening
Definition
A very obvious phenotype. Softening of fruit, development of flavour, aroma, and nutrition, loss of chlorophyll, accumulation of carotenoides, pathogen susceptibility, and change in colour. An irreversible process. Increase in cell wall degrading enzymes cause softening. Starch is broken down and sugar accumulates. Organic acids and phenolics including tannins disappear, and aromatics are released. Ethylene accelerates ripening. Once ripening has begun, it is hard to stop; there is a positive feedback loop. In fleshy fruits, the change makes fruits attractive to humans and other animals, and ready to eat. Once fully ripened, ethylene has less effect on fruit, but can lead to over-ripening. Naturally occurs when seeds are ready, but exogenous ethylene can override this and cause ripening in immature fruit or fruit lacking seeds altogether.
Term
RNA-induced transcriptional silencing (RITS)
Definition
siRNA repressing gene expression by altering chromatin proteins.
Term
RNAi
Definition
Knocks down gene expression.
Term
Road map of hormones
Definition
How hormones act together and/or in opposition to each other and additional forms of each other. Discovered using developmental studies.
Term
Rose
Definition

Rosa sp.

A woody plant with a juvenile period of 20 - 30 days. Some commercial varieties have C gene mutations, so the flower forms only sepals and petals.

Term
S-adenosyl methionine (SAM)
Definition
A precursor for ethylene, derived from methionine.
Term
Salicylic acid (SA)
Definition
A phenolic phyto-hormone that regulates many aspects of plant growth and development, and biotic and abiotic stress responses. Positively regulates developmental leaf senescence. SA mutants have delayed senescence.
Term
Salt
Definition
Similar to water stress, because it affects osmosis of water. Induces drought responses from plants.
Term
Secondary cell wall
Definition
40 - 50% cellulose, 20 - 30% hemicellulose, 25 - 30% lignin. Trace amounts of pectin and proteins.
Term
Secondary inflorescence meristem
Definition
Develop from the axillary buds of cauline leaves in Arabidopsis. Repeats the pattern of development of the primary inflorescence meristem.
Term
Semi-dwarf rice
Definition
Partially insensitive to GA. Same number of spikelets as classic rice, but has more compact architecture. Produces higher yield because it puts less energy into vegetative growth.
Term
Senescence
Definition
An engogenous stimulus from lowered levels of CK. The plant can sense time. Avoids frost.
Term
Sensor protein
Definition
A component of the two-component regulatory system. Membrane-bound histidine kinase. Receive input signal and undergo autophosphorylation on a histidine residue. Pass the signal response reuglators by transferring a phosphoryl group to a conserved aspartate residue. Have an input domain that receives environmental signals, and a transmitter domain that transmits the signal to the response.
Term
Sepal
Definition
One of the primary floral whorls. The outermost whorl. Leaf-like, and green at maturity.
Term
SEPALLATA 1, 2, 3, and 4 (SEP)
Definition
Encodes MADS-box transcription facotrs. Class E homeotic genes. Expressed in the floral meristem, in all whorls.
Term
Shoot apical meristem (SAM)
Definition
Requires low GA, and high CK levels to persist.
Term
Short day plant (SDP)
Definition
Plants that flower in only short days, or flowering is accelerated by short days (obligate or facultative). Need a certain night length to flower. Flower in short-day conditions, and have vegetative growth in long-day conditions.
Term
Short-long-day plant (SLDP)
Definition
A dual-day length plant. Flower only after a sequence of short days followed by long days. Include white clover, Canterbury bells, and echeveria. Flower in the early spring, when days are lengthening.
Term
SHORT VEGETATIVE PHASE (SVP)
Definition
Encodes a MADS-box transcription factor. Represses flowering at low temperatures. Expressed in the leaves and apex.
Term
Sieve tube element
Definition
A phloem cell that transports metabolites from source tissues to sink tissues. Lose most of their organelles in development, including the nucleus, but remain physiologically alive. Cytoplasmically coupled to companion cells by plasmodesmata.
Term
Signal generator
Definition
In flowering, it is the leaves. Senses the environment: day length, light quality. Assimilates and fixes carbon, and produces florigen.
Term
Signal receptor
Definition
In flowering it is the SAM. Stem cells give rise to plant shoots: vegetative and reproductive structures. Becomes competent to receive the floral signal.
Term
Silver nitrate
Definition
Inhibits ethylene production. Used in cut flowers to inhbit ethylene and increase shelf life of the flowers.
Term
Siphonostele
Definition
A type of vasculature pattern. Central pith, surrounded by a ring of xylen surrounded by a ring of phloem.
Term
SPEECHLESS (SPCH)
Definition
A regulator of stomatal cell fate. Encodes a transcription factor. Required and sufficient for entry into stomatal lineage, and for continued self-renewing divisions. Causes cells to divide asymmetrically. Binds to approximately a third of the genome, in promoter regions. Activates ICE1/SCREAM and MUTE.
Term
SQUAMOSA
Definition
The AP1 ortholog in Antirrhinum.
Term
Stamen
Definition
One of the primary floral whorls. The male organs of the flower. Proudce pollen.
Term
Starch
Definition
Not osmotically active.
Term
Starch sheath
Definition
Endodermal cells surrounding vascular tissues. Contain statoliths for shoot gravitropisms.
Term
Statoliths
Definition
High density amyloplasts containing starch. It is not known how they transmit information for auxin redistribution.
Term
STM
Definition
Inhibits GA, and promotes CK.
Term
Stomata
Definition

"Mouth"

Present in all land plants. Even the earliest land plants had stomata. Arrangement and size depends on species.

Term
Stomatal closing
Definition
Water flows out of guard cells. The plant cannot grow when stomata are closed, because there is no carbon fixation. However this can be advantageous in some industries such as flower production.
Term
Stomatal opening
Definition
Water flows into guard cells.
Term
Stratification
Definition
Cold treatment that induces germination of seeds. Not requried to induce germination of Arabidopsis seeds, but it synchronizes germination, so it is used in scientific experiments. Without stratification the seeds can germinate weeks apart.
Term
Strigolactone
Definition
One of the Big 5. Travels up lateral branches to inhibit growth of lateral buds. Derived from tissue in the central column exposed to auxin, below the apex.
Term
Subjective day
Definition
The phase rhythm coinciding with the light period of the previous entraining cycle when an organism is entrained to a 12 h light/12 h dark cycle, then allowed to free-run in constant light or darkness.
Term
Subjective night
Definition
The phase of rhythm coinciding with the dark period of the previous entraining cycle when an organism is entrained to a 12 h light/12 h dark cycle, then allowed to free-run in constant light or darkness.
Term
Sucrose non-fermenting related kinase 2 (SnRK2)
Definition
A family of serine/threonine protein kinases. In the absence of ABA, PP2Cs bind to the C termini, and block SnRK kinase activity by removing phosphate groups from a region within the kinase domain.
Term
Sugar
Definition
Tastes better than starch, and is water soluble. It is osmotically active. A signaller in the supply chain.
Term
Super rice
Definition
Semi-dwarf rice, with less lateral shoots. More energy is put into spikelets. A smaller plant, but produces higher yields. Has altered florescence structure, for a higher density in spikelets.
Term
SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 (SOC1)
Definition
Encodes a MADS-box transcription factor. Activates flowering downstream of florigen. Expressed in the leaves and apex.
Term
Sycamore maple
Definition

Acer pseudoplanatus

A woody plant with a juvenile period of 15 - 20 years.

Term
Systematic acquired acclimation (SAA)
Definition
Abiotic stress applied to one part of the plant can generate signal that can be transported to the rest of the plant, initiating acclimation even in parts of the plant that have not been subjected to stress. Responds to heat, cold, salinity, and high light intensity.
Term
T-DNA
Definition
Injected into the host plant cell by Agrobacterium tumefaciens. Transient expression. Transcribes genes, and promotes production of cytokinin, leading to cell proliferation and formation of a massive gall.
Term
Technical replicate
Definition
Individual parts analyzed in a biological replicate. When all technical replicates of a single plant are combined, the resulting mean value represents one biological replicate.
Term
Temperature compensation
Definition
Teh feature which allows the circadian clock to keep time at different temperatures. All components are temperature sensitive, but the effects of each cancel each other out.
Term
Teosinte
Definition
An obligate short-day plant. Short and bulky plant architecture. The ancestor of modern corn.
Term
Ti plasmid
Definition
Allows for the insertion of T-DNA into the plant cell genome, and consitutive expression of genes on the T-DNA.
Term
TIR1
Definition
An auxin receptor protein. Has a negative feedback loop.
Term
Tobacco
Definition
A callus will produce roots in basic nutrient material without hormone balance control. A long-day plant.
Term
Tomato
Definition
They are ripened in the store. Humans have selected tomatoes that do not ripen on their own; ethylene production mutants. Harvested and shipped green, then ripened by exogenous ethylene in the store.
Term
Tracheary elements
Definition

Vessel elements

Xylem cells that facilitate water and solute transport. Thick secondary cell walls. Undergo programmed cell death resulting in continuous system of adjoining hollow cells. Includes protoxylem and metaxylem tracheary elements.

Term
Triple response
Definition
Ethylene response in germinating seedlings in the dark. Reduced elongation, hypocotyl swelling, apical hook exaggeration, lateral cell expansion, inhibition of root growth, and increased root hair production. Ethylene may build up in the soil if the seedling encounters an obstacle such as a pebble. Helps the seedling push past impediments by giving it hydraulic strength. Used to select mutants which are defective in ethylene response. A reversible process; once ethylene concentrations reduce the plant goes back to normal.
Term
Tropism
Definition
Differential cell elongation. Includes gravitropism, phototropism, and thigmotropism.
Term
Two-component regulatory systems
Definition
Important signalling systems in bacteria. Found only in prokaryotes. Mediates a wide range of responses to environmental stimuli. Two components: the sensor protein and response regulator.
Term
Type-A ARR
Definition
A class of ARR gene family. Products are made of only a receiver domain. Negatively regulate cytokinin signalling by interacting with other proteins. Depends on phosphorylation.
Term
Type-B ARR
Definition
A class of ARR gene family. Products have a receiver domain and an output domain with DNA-binding transcription activation sites. Activated by phosphorylation, enabling them to regulate transcription of target genes, including type-A ARR genes.
Term
Vascular cambium
Definition
A lateral meristem from which extensive secondary xylem is formed (wood).
Term
Vascular plants
Definition

Tracheophytes

Adapted to a variety of environments. Over 250,000 species.

Term
Vascular tissue
Definition
A specialized tissue system that transports water and nutrients throughout the body of vascular plants. Connects all plant organs. Composed of xylem and phloem.
Term
Vernalization
Definition
Not to be confused with stratification. The process in which repression of flowering is alleviated by cold treatment to hydrated seeds or growing plants. The SAM becomes competent. Indicates to the plant that winter has passed. Plants show delayed flowering, or remain vegetative without vernalization, and are not competent to floral signals. The longer the cold period, the more effective the vernalization. Cooling is sensed in the SAM, which must be metabolically active. Causes epigenetic silencing of FLC.
Term
VIN3
Definition
Controls the vernalization pathway in Arabidopsis, and is affected by cold treatment. Inhibits FLC.
Term
VP1
Definition
A gene in corn. Mutants are ABA insensitive, and have precocious germination of seeds on the ear. Seeds never get the signal to go dormant.
Term
VRN1
Definition
Controls the vernalization pathway in Arabidopsis, and is affected by cold treatment. Inhibits FLC.
Term
VRN2
Definition
Controls the vernalization pathway in Arabidopsis, and is affected by cold treatment. Inhibits FLC.
Term
Whorl
Definition
A concentric ring of floral organs, circling the floral meristem.
Term
Wightman Garner and Henry Allard
Definition
From the U.S. Department of Agriculture laboratories in Beltsville, Maryland. In the 1920s, hypothesized that flowering was induced by photoperiod in some plants. Discovered Maryland Mammoth tobacco.
Term
Winter wheat
Definition
Planted in the fall. Requires vernalization to flower in the spring. Grows a little, then becomes dormant all winter under the snow. Allows for an early spring crop, and the field can then be planted in a two-phase harvest.
Term
Wood
Definition
Xylem dies every year and new growth ring is laid down. Old xylem forms callose plugs. Phloem is a living tissue maintained on the outside of the tree.
Term
Xylary fibres
Definition
Xylem cells that have a thick, evenly deposited secondary cell wall. Very long, thin cells. Programmed cell death is delayed, allowing for more extensive thickening and lignification of the secondary cell wall. Provides structural support.
Term
Xylen
Definition
A component of vascular tissue. Water is transported from roots to sites of negative pressure. Unidirectional flow. Developmental commitment is controlled by key transcription factors. Mature tissues have three cell types: tracheary elements or vessel elements, xylary fibres, and xylem parenchyma cells.
Term
Xlyem parenchyma cells
Definition
Xylem cells that lack well-defined secondary cell walls. Found in all vascular tissues. Variety of functions, includign aiding in lignification of secondary walls of neighboring vessel elements and fibres. Has aquaporins that load water onto the xylem, preventing water loss.
Term
Xylem precuros cells
Definition
Derived from procambial cells. Develop into xylem cells.
Term
YFP
Definition
A mutation of GDP, producing yellow fluorescence. Can be split in two parts: YFP-C and YFP-N. Used in BiFC.
Term
ZAG1
Definition
An AG ortholog in corn.
Term
ZAP1
Definition
An AP1 ortholog in corn.
Term
Zeatin
Definition
The most abundant natural form of CK. More expensive to produce than kinetin.
Term
Zeitgeber
Definition
Environmental signals to which circadian rhythms are entrained.
Term
ZMM2
Definition
An AG ortholog in corn.
Term
ZMM3, 8, and 14
Definition
SEP orthologs in corn.
Supporting users have an ad free experience!