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Microbiology 204; Waldmann: Exam 3
Exam 3 material
80
Microbiology
Not Applicable
06/22/2010

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Term
replication
Definition
a process that produces an exact copy; in molecular biology, this is a process that produces two DNA molecules that are exact copies of the starting DNA molecules
Term
DNA polymerase
Definition
the enzyme that links together nucleotides to make new strands of DNA
Term
origin of replication
Definition
a location on a chromosome where replication begins
Term
semi-conservative
Definition
half of the original (in particular, one whole strand of the original helix) is intact in each new helix at the end of replication (the other strand is newly synthesized)
Term
polymerase chain reaction (PCR)
Definition
the amplification of small amounts of DNA using repeated rounds of replication; a lab technique used to make many copies of a DNA segment
Term
primer
Definition
a short single-stranded nucleic acid molecule that serves as the beginning of a strand during synthesis
Term
Central Dogma of Biology
Definition
States there is a one-way flow of information from DNA to protein; this was believed to be correct from 1950s to the 1980s.
Term
reverse transcription
Definition
the flow of information from RNA to produce DNA
Term
promoter
Definition
a site on a DNA molecule that promotes the binding of RNA polymerase and points the direction for transcription
Term
messenger RNA (mRNA)
Definition
an RNA molecule that encodes a protein
Term
ribosomal RNA (rRNA)
Definition
an RNA molecule that is used to build a ribosome
Term
transfer RNA (tRNA)
Definition
an RNA molecule that carries an amino acid into a ribosome
Term
base pair
Definition
two nitrogenous bases which associate via hydrogen bonds
Term
complementary
Definition
an adjective referring to either
-two nitrogenous bases that form a base pair
or to
-two nucleic acid strands that can form base pairs along their entire length
Term
reanneal
Definition
reform the hydrogen bonds between the base pairs
Term
transcription
Definition
the process in which one strand of DNA is used as a template to synthesize a complementary RNA molecule
Term
-transcription (DNA to RNA)
-translation (RNA to amino acid)
Definition
the process involving
-initiation
-elongation
-termination
Term
translation
Definition
a cellular process in which the sequence of nitrogenous bases in an mRNA molecule determines the sequence of amino acids linked together to make a protein
Term
codon
Definition
a group of three nitrogenous bases in an mRNA molecule that are used as a code for one amino acid
Term
anti-codon
Definition
a group of three nitrogenous bases in a tRNA molecule that base pair to a codon
Term
stop codon
nonsense codon
terminator codon
Definition
a group of three nitrogenous bases that do not encode an amino acid and serve as a stop signal, ending translation
Term
reading frame
Definition
the grouping of the bases into codons
Term
gene
Definition
a segment of DNA which encodes one RNA molecule
Term
AUG
Definition
the start-codon in translation
Term
operator
Definition
a segment of a DNA molecule that controls the transcription of a neighboring segments
Term
operon
Definition
a cluster of genes whose expression is controlled by a single operator
Term
repression
Definition
(in genetics) the inhibition of transcription of a gene when a compound interferes with the binding RNA polymerase to the gene's promotor
Term
induction
Definition
(in genetics) the enhancement of transcription of a gene when a compound increases the rate at which RNA polymerase initiates transcription of the gene
Term
mutations
Definition
permanent changes in the sequence of nitrogenous bases in a DNA molecule
Term
genotype
Definition
the genetic make-up of one trait of an organism
Term
genome
Definition
the genetic make-up of an organism
Term
phenotype
Definition
the observable traits of an organism
Term
mutant
Definition
an organism that differs from its parent due to a mutation
Term
silent mutation
Definition
a mutation that does not change the phenotype
Term
deleterious mutation
Definition
a mutation that slows the growth and/or reproduction of an organism or is lethal
Term
beneficial mutation
Definition
a mutation that enhances an organism's ability to survive and reproduce
Term
spontaneous mutation
Definition
a naturally-occurring mutation (most occur when DNA polymerase makes a mistake during replication; can also occur when a virus inserts its nucleic acid into the chromosome of the host cell)
Term
induced mutation
Definition
a mutation that occurs due to human activities or man-made chemicals
Term
mutagen
Definition
an agent that causes mutation; can include
-physical agents (xray, UV radiation)
-chemical agents (nitrous acid; base analog)
Term
base analog
Definition
a compound that is structurally similar to one of the common nitrogenous bases. Some cause mutations when they are incorporated into strands of DNA during synthesis.
Term
point mutation
Definition
a change in a single base, e.g., substitution, deletion of one nucleotide, or addition of a nucleotide
Term
insertion
Definition
when a longer segment of nucleotides is added; also occurs when a virus or a plasmid inserts its nucleic acid in the chromosome
Term
deletion
Definition
when a longer segment of nucleotides is deleted
Term
frameshift mutation
Definition
a mutation that changes the reading frame
Term
reverse mutation
Definition
a mutation occurring in a mutant that restores the original phenotype
Term
obligate intracellular parasite
Definition
an organism that survives only by living inside a host cell
Term
virion
Definition
a fully-assembled extra-cellular virus
Term
capsid
Definition
a viral protein coat
Term
nucleocapsid
Definition
the protein coat along with the nucleic acid core of a virus
Term
viral envelope
Definition
a phospholipid bilayer surrounding a viral capsid
Term
spikes
Definition
functional molecules that project out from the surface of a viral particle (usually protein or glycoprotein in composition)
Term
receptor
Definition
a molecule that acts as a recognition and binding site for another molecule
Term
filamentous
Definition
long and thin; aka helical
Term
icosahedral
Definition
having 20 triangular sides
Term
complex
Definition
bacterial viruses that have an icosahedral head on a filamentous body; also includes any other unusual shapes
Term
neurotropic
Definition
a virus that infects the nervous system
Term
dermotropic
Definition
a virus that infects the skin
Term
pneumotropic
Definition
a virus that infects the lungs and/or respiratory system
Term
viscerotropic
Definition
a virus that infects the blood & a variety of organs
Term
bacteriophage
Definition
a virus that infects bacteria
Term
lysis
Definition
bursting
Term
lytic cycle
Definition
a viral replication cycle in which a virus penetrates a host cell, replicates, and lyses the host cell, releasing numerous viral particles
Term
lysogenic
Definition
capable of becoming lytic
Term
lysogenic cycle
Definition
a viral replication cycle in which a viral genome is integrated into the host cell's chromosome, and, along with the rest of the chromosome, the viral genome is copied and passed to daughter cells; if stressed, this cycle can convert to the lytic cycle
Term
provirus
Definition
a viral genome that is located in a eukaryotic chromosome
Term
prophage
Definition
a viral genome that is inserted in a bacterial chromosome
Term
virulent
Definition
harsh, or having a severe effect
Term
virulent phage
Definition
phage that have a drastic effect on the host cell because they can replicate via the lytic cycle, lysing the host cell after release
Term
temperate phage
Definition
phage that have a relatively mild effect on the host cell because they can replicate via the lysogenic cycle
Term
budding
Definition
1) cell division in which one daughter cell is much smaller than the other daughter cell
2) release of viral particles from a host cell without lysis of the cell
Term
interferons
Definition
compounds produced by virally-infected cells. The compounds are secreted from the cells and bind to nearby cells where they activate antiviral mechanisms.
Used to treat MS, some cancers, herpes, HIV, & hepatitis
Term
vesicle
Definition
an elevation of skin filled with serous fluid
Term
papule
Definition
an elevation of skin, reddened, solid, & circumscribed
Term
macule
Definition
a discoloration of skin, neither raised nor depressed
Term
Koplik's spots
Definition
a series of bright red patches with white pimple-like centers located on the buccal mucosa opposite the 1st and 2nd molars. Appear several days before the skin rash of measles
Term
Negri bodies
Definition
dark cytoplasmic granules seen in the brain stem cells of rabid animals
Term
Downey cells
Definition
enlarged lymphocytes with lots of vacuoles characteristic of Epstein-Barr virus infections
Term
antibody
Definition
a glycoprotein produced by a white blood cell that binds to a specific foreign molecule
Term
free antibodies
Definition
antibody molecules which are free in the blood serum and not attached to a cell surface
Term
hemagglutination
Definition
clumping of red blood cells
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