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Micro BIo
6-B Methods for Culturing Microorganisms
18
Biology
Professional
10/21/2011

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Term

 

Culture

 

Definition

 

o   Growing microbes called a culture

o   Culture medium – what they grow on

§  Only requirement is to meet nutrient requirements of microbe

§  Some simple, others complex

§  Fastidious – microbes requiring special growth factors

§  Most prokaryotes have never been cultured

Term

 

Media

 

Definition

 

·         Wide variety

·         Commercially available dehydrated powder

o   Add water

o   Sterilized in closed container

o   Inoculated

·         Liquid and solid available

·         Solid contains solidifying agent such as agar

o   Complex polysaccharide in marine algae and seaweed

o   Ideal solidifying agent

o   Stabile to sterilization at 121 C

o   Not degrade by microbes

o   Dissolves in water at 95 C

o   Solidifies when cooled at 40 C in 0.3% concentration

§  Temperature sensitive nutrients can be added at 45 C before solidifying 45 C

o   Don’t liquefy until brought up to 95 C again

o   Used in test tubes or Petri dishes

o   Agar slant – solidified in tube at an angle

§  Slant - top

§  Butt – bottom

o   Agar deep – straight up tube

·         Types

o   Defined Media

o   Complex Media

o   Reducing (anaerobic) media

o   Selective media

o   Differential media

                         Transport media

Term

Defined Media

Definition

Medium where exact chemical composition is known

Term

Complex Media

Definition

 

o   Chemical composition not known

o   Most commonly used to grow microbes

o   Peptones (protein digests, cell lysates, animal tissue extracts

§  Rich sources of nutrients

Term

Reducing Media

Definition

 

·         Contains reducing agent like sodium thioglycollate

o   Reacts with and removes oxygen from culture medium

·         Allows obligate anaerobes to grow

·         Fluid Thioglycolate Medium – most commonly used

o   Liquid reducing medium

o   0.1 % sodium thioglycolate

o   0.1 % agar – slows diffusion of oxygen

·         Solid reducing media require removal of oxygen from container

o   GasPak Jar system

§  Sealable jar where oxygen is removed chemically by H2palladium reaction

§  H2 and CO2 generated in jar

§  Anaerobic conditions reached in 20 mins

o   Anaerobic chambers

§  Large plastic chambers filled with oxygen-free gas (N2, H2, & CO2)

§  Purge lock for materials and armlength gloves

o   Roll tubes

§  Individual culture tubes with oxygen free gas and stopper.

                            Allows growth on surface to ease identification

Term

 

Selective media

 

Definition

 

o   Ingredients inhibit unwanted bacteria but allow sought after species

§  High salt

§  Inhibitory dyes

§  Low pH

§  Antibiotics

Term

 

Differential Media

 

Definition

 

o   Differentiate species by color, size, precipitate formation etc

o   Chromager Orientation

§  Shows different urinary tract infections differently

 

Term

Selective and Differential Media

Definition

 

·         Widely used in clinical labs because they allow rapid detection and isolation of specific pathogens despite relatively low count

o   Non pathogens usually outgrow pathogens

o   Especially from samples with large number of flora (eg feces)

                      Hundreds of different types for specific species developed

Term

Transport Media

Definition

 

o   Keep microbes alive, but don’t promote growth for shipping to labs

o   Minimal nutrients

o   Want to keep true microbial composition

 

Term

Special Culture techniques

Definition

 

·         Special cultures sometimes required

·         Culture in living animals

o   Some parasitic or fastidious microbes only been cultured in living animals

o   Mycobacterium leprae (leprosy)only been able to grow on armadillos and humans

o   Terponema pallidum causes syphilis but loses virulence if grown on media

§  Grown on rabbits

o   50% of periodontal pocket microbes cannot be cultured in vitro

·         Culture in Animal Cells

o   Obligate intracellular pathogens like Rickettsia and Chlamydia only grown in live animals or live animal cells

o   More convenient and less expensive to grow in animal cells in tissue culture

·         Culture in an Elevated CO2 Atmosphere

o   Capnophilic bacteria grow in higher levels of CO2 (5-10%) as opposed to 0.2% of air

§  Normal flora for animals or humans due to high rates of CO2

o   High levels achieved using either

§  CO2 incubator

·         Adjustable gas flow valves mix CO2 and air around 10%

§  Gaspak Jar

·         Chemical CO2 generator (5-10%)

§  Plastic bag CO2 system

·         Plastic bag plus chemical CO2 generator (5-10%)

§  Candle jar system-usefule to grow microaerophilic microbes and capnophiles

·         Lit candle in sealed jar for (5-10%) atmosphere

·         Not convenient anymore

·         Enrichment culture

o   Selects for sought microbe with favorable medium

o   Eg. Only lysine as carbon source to find bacteria that use only lysine

                Differs from selective in that no inhibitory substances used

Term

  Preserving Microbial Cultures

Definition

 

o   Can be refrigerated for weeks to months at 0-4C

o   Can be deep freezed of lyphilizing (freeze dried) for years

§  Often done with dry ice or liquid nitrogen

·         Reduces ice crystals to minimize plasma membrane damage

·         Stored -70 C or colder

§  Lyophilization uses vacuum to evaporate water from frozen sample

Term

Culturing Microorganisms

Definition

o   Sampled aseptically with sterile loop or pipette

o   Introduced aseptically into sterile liquid or solid culture medium

o   Incubated for 1-3 days at appropriate temperature

o   Turbidity or cloudiness in liquid medium

o   Formation of visible colonies on solid medium

Term

 

Isolating Pure Cultures of Microorganisms

 

Definition

o   Usually live in proximity with other microbes

o   Need to isolate and grow a pure culture

o   Essential for Koch’s postulates

o   Once isolated, properties can be determined

§  To treat nosocomial infections they need to be isolated and an antibiotic found

o   Techniques

§  Streak plate

§  Dilution plating

Term

Streak Plate Technique

Definition

 

o   Cultured in 3 streak pattern with crossovers

o   Incubated at 37 C for 1-3 days

o   Single well-isolated colonies are most likely from a single cell (pure cultures)

o   Transfer single colony by sterile inoculating needle and culturing again

o   Size of culture depends on

§  Nature of growth medium

§  Age of colony

§  Population density on plate

§  Species characteristics

o   Individual species usually have distinctive appearances

o   Number of cells in colony

§  small-0.1 mm – 106 cells

§  Large 1 mm – 109 cells

o   Yeast colonies look similar to bacteria

o   Mold form large fuzzy colonies

§  After  a few days spores visible

Term

 

Taking Microbial Samples for Culture

 

Definition

 

o   Variety of ways

§  Solid materials can be ground into sterile saline and a streak plate or dilution plating analysis

§  Air and dilute water samples can be passed through 0.2um filter then cultured on media

§  Surfaces can be swabbed with moist sterile swab and then swabbed onto plate or immersed in saline

§  Many methods from body

o   Must be careful to

§  Avoid cross contamination

§  Label where taken

§  Transport on transport media

Term

Ecological association of microbes

Definition

 

o   Microbes interact in a community

o   Antagonistic – one harms the other (viruses)

o   Synergistic – cooperate and benefit each other (biofilms)

o   Symbiotic – adapted to living together

 

Term
Biofilms
Definition

 

·         Sticky, polysaccharide encased film of microbes on a surface

o   Free microbes adhere to surface, sometimes aided by organic molecules

o   Binding to surface triggers production of extracellular slime that attaches

o   Grow and become encased

o   Others join them fixing to them or slime

·         Not haphazard but complex

o   Architecture depends on

§  Supply and flow rate of nutrients

§  Growth rate of biomass and form

§  Rate of detachment from biofilm

·         Low nutrient flow rate or nutrients quickly used

o   Finger-like or mushroom like structures with holes and channels

·         Sufficient nutrient flow rate

o   Compact structure with less form

·         Nutrients and waste flow through open channels

             Projections break off and seed colonization at other sites

 

o   Allow microbes to work in concert and adapt

o   Very common

§  Sticky

§  Coat protects from environmental and chemical factors

§  All function together

o   Important in industry

o   Cause metal corrosion

o   Clog pipes

o   Unwanted source of microbes

o   Form in suction devices, sinks, faucets, in dental offices

o   Many infections caused by biofilms

§  Catheter induced septicemia and skin infections

§  Artificial heart valves, implanted knees

§  Dental plaque

o   Difficult to treat due to increased resistance to

§  Antibiotics

§  Antimicrobial chemicals

§  Host immune responses

§  100x – 1000x more resistant

§  Why?

·         Can’t penetrate

·         Quorum sensing activated genes for membrane efflux pumps, pump stuff out

·         Conjugation and transformation readily happening

 

o   Chronic and difficult to eradicate

 

Term

  Quorum sensing

Definition

o   Chemical sensing coordinating growth and formation according to growth density

o   As they accumulate, secrete chemical signalling molecule (eg acetylated homoserine lactone)

o   When critical concentration reached, triggers signaling protein in membrane

o   Transcription factors produced that are not usually produced in free growing bacteria

o   Biofilms have different properties that free growing microbes

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