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MED CHEM1 (Leusch)-MOD 01
Leusch lectures on SARs
102
Chemistry
Graduate
10/07/2016

Additional Chemistry Flashcards

 


 

Cards

Term

Rx name?

[image]

Definition

Papaverine

 

[erectile dysfunction]

papaver somniferium

opium poppy derivative

Term

Rx name?

[image]

Definition

Digoxin

[heart failure, supraventricular arrythmias]

digitalis purpurea

red foxglove derivative

Term

Rx name?

[image]

Definition

Artemether

[malaria]

artemesia annua

Term

(natural products)

1. Mixture of compounds from plants, herbs, vegetables are _________

2. and defined chemical entites that are small molecules[MW <2,000 g/mol] isolated from biological sources{plants,bacteria,fungi} are__________

Definition

1. Herbal remedies/Botanical Dietary Supplements

 

2. Single Agents/Drugs

Term

True or False

 

Drug development is a 10-17 year process with a less than 10% success rate

Definition
[image]
Term

True or False

 

Drug repositioning is a 3-12 year process with reduced safety and pharmacokinetic uncertainty

Definition
[image]
Term

This act exempted dietary supplements from regulation as drugs, provided they are NOT MARKETED FOR Dx, Tx, CURE, or DISEASE PREVENTION

[Do not require premarketing approval by the FDA]

Definition
Dietary SUpplement and Health Education Act (1994)
Term

True or False

 

Dietary supplements do not require proof of efficacy

 

Dietary supplements are exempt from good manufacturing practices (GMP)

 

Manufacture self regulate dietary supplements and are marketed until proven unsafe

Definition
[image]
Term

This dietary supplement was found to be contaminated with an anti-prostate cancer prescription medication and was marketed from 1996-2002

(7 botanicals, 1 fungus)

Definition

PC-SPES

 

Term

Echinacea

[Herbal Remedy]

Definition
antiseptic, antiviral, immunostimulant
Term

Evening Rose

[Herbal Remedy]

Definition
premenstrual tension
Term

Feverfew

[Herbal Remedy]

Definition
migraine
Term

Garlic

[Herbal Remedy]

Definition
Lowers cholesterol, antimicrobial
Term

Ginger

[Herbal Remedy]

Definition
motion sickness, nausea
Term

Ginkgo (Ginkgo Biloba)

[Herbal Remedy]

Definition
anti-inflammatory, circulatory disorders, dementia
Term

Ginseng

[Herbal Remedy]

Definition
Stress & Fatigue
Term

Valerian and Hops

[Herbal Remedy}

Definition
Sedative, sleep disturbances
Term

Saw palmetto

[Herbal Remedy]

Definition

prostate

 

(shrinks the inner lining that puts pressure on the tubes that carry urine.)

 

Term

St John's Wort

[Botanical Dietary Supplement]

 Contains hypericin and Hyperforin

Definition

Anti-depressant, anti anxiety

 

***produces CYP's (enzyme that induces metabolism of other drugs)

***This interacts w/ other prescription Rx's

Term

Rx name?

[image]

Definition

Hyperforin

[inhibits neurotransmitter uptake]

(1 of 2 compounds responsible for st johns wort's activity)

Term

Rx name?

[image]

Definition

Hypericin

[inhibits several kinases and dopamine B-hydrolase {increased dopamine levels}]

(1 of 2 compounds responsible for st johns wort's activity)

side effect= photosensitivity

Term

Rx name?

 

[image]

Definition

Methysticin

[anticonvulsant, neuroprotective properties]

(a kavalactone)

 

Term
Octanol mimicks the lipid phase of a cell membrane well. Seperating a drug using Octanol and water provides us with a log P. What is log P called?
Definition
Partition Coefficient
Term

Name this functional group

[image]

Definition
Epoxide
Term
These 3 functional groups are very reactive and should be omitted when creating new drugs
Definition

1. Epoxide

 

2. Catechols [form unsaturated quinones to react w/ proteins]

 

3. Carbocations [damage DNA by introducing mutations]

 

Term

True or False

 

Natural products tend to have more stereocenters (chiral) than synthetic products

Definition
[image]
Term

Rx name?

[image]

Definition

Pulegone

mentha pulegium

[relieves menstrual Sx's, feverish colds]

from Pennyroyal oil

 

 

Term

Rx name?

This is derived from Pulegone 

[image]

Definition

Menthofuran

***highly toxic and believed to be the primary toxin in Pennyroyal. liver/lung damage 

Term

Rx name?

[image]

Definition

Safrole

[diuretic, weakly carcinogenic]

 

Obtained from steam distillation from bark and roots of Sassafras albidum

Term

What is NRF2?

Why important?

Definition

It is a transcription factor.

 

It is carcinogen-detoxifying, antioxidant protein properties, and protects against aging and disease.

Term

Rx name?

[image]

Definition

Aspirin (aka acetylsalicylic acid)

[NSAID, antiplatelet]

 

from wllow tree

 

Term

Rx name?

[image]

Definition

Morphine

[strong opioid analgesic]

 Alkaloid

from Opium poppy seed pods

Term

Rx name?

[image]

Definition

Taxol

[anticancer]

 Terpene

from pacific yew tree

Term

Rx name?

[image]

Definition

Vincristine

[Anti-cancer]

from Madagascar periwinkle

 

Term

Rx name?

[image]

Definition

Doxorubicin

[anticancer]

Term

Rx name?

[image]

Definition

Cyclosporin A

[eye drops for dry eye Tx, immunosuppressant]

Polypeptide

Term

What are the 7 major issues for natural product development?

 

***Hint=Neumonic is SRTENTI (Certainty)

Definition

Supply-NP's product is minor

Reproducibility-hard to find real producer[microbe or source?]

Expense-building and maintaining extract

Time-tedious isolation

Novelty-unpredictable

Tractability-SAR complex

Intellectual Property-authorization to collect in foreign countries

Term

Rx name?

[image]

Definition

Cocaine

 

[Class I scheduled stimulant]

Term

Rx name?

[image]

Definition

Benzocaine

[cocaine derivative]

Term

Rx name?

[image]

Definition

Benzoyl atropine

[cocaine derivative, local anesthetic]

Term

Rx name?

 

[image]

Definition

Procaine (AKA Novocaine)

[cocaine derivative, local anesthetic]

esters

Term

Rx name?

[image]

Definition

Tetracaine

[cocaine derivative, local anesthetic]

esters

Term

Rx name?

[image]

Definition

Lidocaine

[cocaine derivative, local anesthetic]

amides

Term

Rx name?

 

[image]

Definition

Bupivacaine

[cocaine derivative, local anesthetic]

Amides

Term

Malonyl COA is made in claisen condensations an form 1,3 ketones and alcohols in_________________

[image]

Definition

Polyketides

 

Term

Molecule name?

[image]

Definition

Tetracycline

[Bacterial metabolite]

polyketide from bacteria

Term

Rx name?

[image]

Definition

Rapamycin

[antifungal, immunosupressive]

polyketide from bacteria

Term

Rx name?

[image]

Definition

Avernectin a1a

[anthelmintic]

polyketide from bacteria

Term

Rx name?

[image]

Definition

Amphotericin B

[antifungal]

polyketide from bacteria

Term

Rx name?

 

[image]

 

Definition

Nigericin 

[antifungal]

polyketide ffrom bacteria

Term

_______________'s are characterized as molecular structures with carbon units in multiples of 5 with branching at the C2 postion.

[image]

Definition

Isoprenoid/Terpenes

 [many plant secondary metabolite]

ex:limonene,menthol,taxol,taxadiene

(come as C5, C10, C15,........)

Term

____________'s have N's with negative oxidation states, are basic, heterocyclic molecules. 

 

ex:) codeine, morphine,...

Definition

ALKALOIDS [mainly plant product]

[image]

Term

____________'s are molecule characterized by fusing together amino acids.

 

ex:)cyclosporin A, dolastatin

[image]

Definition

PEPTIDES

[mainly produced by bacteria and fungi]

Term

Name?

[image]

Definition

Limonene

 

monoTerpene

Term

Name?

[image]

Definition

amorphadiene

[sesquiterpene]

Term

Name?

[image]

Definition

Taxadiene

{diterpene}

Term

Name?

[image]

Definition

Menthol

[terpene]

Term

Rx Name?

[image]

Definition

Artemisinin

[terpene, antimalarial]

Term

Name?

[image]

Definition

Dopamine

(precursor to alkaloid)

Term

Rx name?

[image]

Definition

Codeine

[opioid analgesic, cough, anti-diarrheal]

Alkaloid

Poppy seed derivative

Term

Rx name?

[image]

Definition

Dolastatin 10

[anticancer]

Hybrid polypeptide-ketide

FDA approved as ADC=antibody drug conjugate

Term
WHat protion of drugs are natural product derived?
Definition

50%

 

(99% of organisms/secondarymetabolites=unexplored)

Term

Rx name?

[image]

Definition

Cytarabine (aka Cytosar-U)

[anticancer]

marine drug

Term

Rx name?

[image]

Definition

Ziconotide (aka Prialt)

marine drug

[analgesic, epilepsy]

*****100-1,000  times more potent than morphine

Term

Rx name?

[image]

Definition

Eribulin Mesylate (aka Halaven)

marine drug

[metastatic breast cancer]

Term

Rx name?

[image]

Definition

Vidarabine (aka Vira-A)

marine drug from sponge

[antiviral]

Term

Rx name?

[image]

Definition

Trabectedin (aka Yondelis)

[anticancer]

marine drug

Term

Rx name?

[image]

Definition

Brentuximab Vedotin (aka Adcetris)

[anticancer]

 

Term
Marine organisms are associated with____________in symbiotic relationships. These other organisms are responsible for the majority of biosynnthetic drugs extracted from marine organisms.
Definition
BACTERIA
Term

Rx name?

[image]

Definition

Cyanosafracin B

[DNA interacting compound]

marine drug

 

***semisynthetic trying to replicate anticancer drug Yondelis

Term

 Rx name?

[image]

Definition

Bryostatin 1

[anticancer, binds protein kinase C]

marine drug

 

***was not feasible to replicat due to complex structure in 1990. An analog was made in 2003

Term

Rx name?

[image]

Definition

Didemnin B

Polypeptide-ketide

[anticancer]

Marine drug from Tridemnum Solidum

 

***was too toxic.analog (APlidine was made and is in clinical trials)

Term

Rx name?

[image]

Definition

Aplidine

[anticancer in clinical trials]

Marine drug

Analog of Didemnin B

****alcohol was changed to ketone

Term

Rx name?

[image]

Definition

Salinosporamide

[anticancer]

Marine drug

Has chloride(key feature in reacting w/ proteosome)

Term

Rx name?

[image]

Definition

Bortezomib (aka Velcade)

Marine Drug

[multiple myeloma 2003]

***proteasome inhibitor

Term

Rx name?

 

[image]

Definition

Carfilzomib

Marine drug

[multiple myeloma 2012]

analog of epoxymycin

***proteasome inhibitor

 

Term

Largazole depicted below. Is it active or is it a prodrug?

 

[image]

Definition

Largazole is a prodrug activated by hydrolysis at the thioester.

Marine drug anticancer

(discovered at UF!)

Term

Drug name?

[image]

Definition

Vorinostat (aka Zolinza)

[T-cell lymphoma]

 

Natural product

SAHA (aka Suberoylanilide hydroxamic acid)

HDAC inhibitor

Term

Rx name?

[image]

Definition

Romidepsin (aka F228)

[CTCL or Cutaneous T-cell Lymphoma 2009]

 

HDAC inhibitor

PRODRUG!

Purely NATURAL COMPOUND!!!!

 

****activated by glutathione mediated reductase

Term

1. p53 and pRb are ________________

 

2. WHile p21 is an __________________

Definition

1. Tumor suppressing transcription proteins

 

2. Endogenous cell cycle inhibitor/controller

Term
What does HDAC stand for and what do they do?
Definition

HDACs are histone deacetylases and are responsible for the deacetylation of histones in the chromosome structure. 

Contain zinc catalytic binding domains.

Term

How can we improve the therapeutic index of existing drugs for cancer therapy?

 

A. Design improved analogues

B. Assure delivery only to target

C. Both a and b

D. Using Morphine Bioisosteres

Definition
C. Both a and b
Term

How can we find a disease relevant protein (to be inhibited or activated)?

 

Definition
Screen molecules/natural products against this target (or block activity w/ antibody)
Term
What does ADC stand for?
Definition

Antibody-Drug Conjugates

 

They are conjugated monoclonal antibodies used against molecules selectively expressed in cancer cells.

Term

Rx name?

[image]

Definition

Calicheamicin(ADC)

[cancer drug w/ antibody]

 

***Approved in2000 but pulled from market in 2010

Term
Knocking down, using an arrayed siRNA library, reporter cells, and a genome wide interrogation of gen function all describe_________________.
Definition

Screening

[for gene products that control disease-associated transcription factors]

Term

1. The druggable genome consists of approximatley how many genes?

 

2. How many are targeted by approved drugs?

 

3. How many kinases controltranscription factors?

 

4. Of the druggable protein targets what % are GPCRs?

Definition

1. ~3,000

 

2. 200 genes

 

3. 518 Kinases

 

4. 15% GPCRs

Term
These macro molecules facilitate sequence specific gene suppression via RNA interface and cause degradation of homologous mRNA sequences.
Definition
siRNA
Term
RISCs are________
Definition
RNA induced siencing complexes
Term

What do these methods describe?

 

-Using Knockout mice

 

-Dominant negatives

 

-siRNA use

Definition
TARGET VALIDATION
Term
RTKs (receptor tyrosine kinases) are often overexpressed in cancers and are activated by______________
Definition
Growth factors
Term
Tyrosine, Threonine, and Serine are substrates for ________________
Definition
Intracellular kinases
Term
What % of cancer drugs are antibodies?
Definition
20%
Term
HER2 (ERBB2) is overexpressed in _______% of invasive breast cancers.
Definition
20-30%
Term

Gleevec (Imatinib, STI-571)

[image]

Definition

Tyrosine Kinase inhibitor

[anticancer]

Phenylaminprimidine back bone (PAP)

 

 

Term

IRESSA

[image]

Definition

Receptor tyrosine kinase inhibitor

[anticancer]

Term

Nexavar (sorafenib)

 

[image]

 

Definition

Broad spectrum RTK + Ser/Thr kinase inhibitor

[anticancer]

Term

Rx name?

[image]

Definition

Trastuzumab (Herceptin)

[anticancer]

ANTI-Her2{anti-RTK monoclonal antibodies}

[image]

Term
Cetuximab and Panitumumab are what type of anti-RTK monoclonal antibodies
Definition

Anti-EGFR

[anticancer]

Term
Bevacizumab
Definition

Anti-VEGF-A

[anticancer]

Anti growth factor monoclonal antibody

Term

This describes what? (one answer)

 

-Binds ATP, transfers phosphate group onto substrate(signaling)

-Ser/Thr ______ transfer phosphate onto certain Thr/Ser residues of substrate

-Tyr______ transfer phosphate onto Tyr residue of substrate

 

Definition
KINASE!!!
Term

How do you inhibit a KINASE?

 

Definition

1. Allosteric inhibitors [induce conformational changes]

 

2. Occupying ATP binding sites [difficult but not impossible]

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