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Lif 102 unit 4 (Bjostad)
unit 4 stuff
77
Biology
Undergraduate 1
11/26/2012

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Term
operator
Definition
regulatory switch that is a segment of DNA usually in a promoter
Term
operon 
Definition
stretch of DNA that includes operator, promoter, and genes they control
Term
repressor
Definition

switches off protein

binds to operator and blocks RNA polymerase

Term
regulatory gene
Definition

repressor. product of seperate gene

 

can be active or inactive

Term
corepressor
Definition
molecule that cooperates w/ repressor protein to switch operon off
Term
promoter
Definition
RNA polym. 2 attaches
Term
inducer
Definition
inactivates repressor to turn ac operon on
Term
catabolic activator protein (CAP)
Definition

activator of transcription. 

activated by binding with cAMP

Term
differential gene expression
Definition
diff. between cell types cause expression of different genes by cells w/ same genes
Term
histone acetulation
Definition

attached to pos. charged lysines in histone tails

loosens chromatin structure

Term

addition of methyl groups (methylation)

 

Definition
condenses chromatin
Term
adding phosphate groups (phosphorylation)
Definition
loosens chromatin
Term
genomic imprinting
Definition
methylation regulates expression of either maternal or paternal alleles of certain genes at start of development
Term
epigenetic inheritance
Definition
inheritance of traits transmitted by mechanisms not directly involving nucleotide sequence
Term
control elements
Definition
segments of noncoding DNA that help regulate transcription by binding certain proteins
Term
enhancers
Definition
far away from gene 
Term
activator
Definition
binds to enhancer and stimulates transcription of genes
Term
proteasomes
Definition
giant protein complexes that bind protein molecules and degrade them
Term
Micro RNAs
Definition
small single stranded RNA molecules that can bind to mRNA
Term
RNA interface
Definition
Phenom. inhibition of gene expression by RNA molecules
Term
cytoplasmic determinants
Definition
maternal substances in egg that influence early development
Term
maternal effect genes
Definition
encode for cytoplasmic determinants that establish axes of body
Term
capsid
Definition
protein shell encloses genome
Term
viral envelopes
Definition
surround capsids of many viruses in animals
Term
host range
Definition
limited number of host cells virus can infect
Term
lytic cycle
Definition
makes new phages and digests host cell wall
Term
lysogenic cycle
Definition

doesnt digest host

Virus dna is incorperated into host cell's chromasome

Term
virulent phage
Definition
only has lytic cycle
Term
prophage
Definition
virulent DNA incorperated into host
Term
temperate phages
Definition
use both lytic and lysogenic cycles
Term
retrovirus
Definition
use reverse transcriptase
Term
gene cloning
Definition
using bacteria to make multiple copies of a gene
Term
plasmids
Definition
small circular DNA molecules that replicate seperately from bacterial chromasomes
Term
restriction enzymes
Definition

cut DNA at restriction sites.

makes fragments 

Term
sticky ends
Definition
dna cut in staggered way by restriction enzymes, that bond with complimentary sticky ends
Term
DNA ligase
Definition
seals bonds between restriction enzymes
Term
cloning vector
Definition
original plasmid in cloning
Term
bacteriophages
Definition
genomic library stored as collection of phage clones
Term
bacterial artificial chromasome (BAC) 
Definition
large plasmid trimmed down to carry large DNA insert
Term
complementary DNA (cDNA)
Definition
library made by cloning DNA in vitro by reverse transcription
Term
cDNA library
Definition
only part of the genome. subset of genes transcribed into mRNA in original cells
Term
nucleic acid probe
Definition
can identify clone carrying gene by havng complementary sequence
Term
expression vector
Definition
cloning vector that contains a highly active prokaryotic promoter
Term
yeast artificial chromasomes (YAC)
Definition
cultured eukaryotic cells used as host cells. use as vectors help avoid gene expression problems. can carry more DNA than plasmids
Term
electroporation
Definition
way of introducing recombinant DNA with use of electric shock 
Term
polymerase chain reaction (PCR)
Definition
produces many copies of spec. target DNA. process of heating cooling and replication that makes exponentially growing population of identical DNA molecules 
Term
Gel electrophoresis
Definition
molecular seive to separate nucleic acids and proteins by size
Term
Southern blotting
Definition
combines gel electrophoresis w/ nucleic acid hybridization. use labeled probes that hybridize to DNA on blot of gel
Term
northern blotting
Definition
gel electrophoresis of mRNA followed by hybridization w/ probe on a membrane
Term
reverse transcriptase polymerase chain reaction
Definition
quicker and more sensative. Added to mRNA to make cDNA which serves as template for PCR amp
Term
DNA microarray assays
Definition
compare partners of gene expression in diff. tissues at diff. times or under diff. conditions
Term
genomics
Definition
study of whole sets of genes and their interpretations
Term
proteomics
Definition
systematic study of all proteins encoded by a genome
Term
physical map
Definition
expresses distance between genetic markers
Term
repetitive DNA
Definition
multiple copies in genome
Term
transposable elements
Definition
move from one site to another in cell's DNA
Term
transposons
Definition
move within genome by means of DNA intermediate
Term
retro transposons
Definition
move within genome by means of RNA
Term
simple sequence DNA
Definition

many copies of tandemly repeated shor sequence.

 

series of repeating units 2-5 nucleotides is short tandem repeater

Term
lysozome
Definition
enzyme that helps protect animals against bacterial infection
Term
lactalbumin
Definition
non enzymatic protein that plays role in milk production in mammals
Term
hox genes
Definition
homeotic genes in animals
Term
mads box
Definition
homeotic genes in plants
Term
local environment
Definition
determines which traits will be selected for or against in any specific population
Term
convergent evolution
Definition
evolution of similar or analogous features in distantly related groups
Term
mutations
Definition
in nucleotides, only gamete mutations are passed on
Term
2 processes make evolution possible
Definition

sexual reproduction

 

mutations

Term
population
Definition
localized group of individual capable of interbreeding and producing fertile offspring
Term
gene pool
Definition

consists of all alleles for all loci in population.

 

locus is fixed if all individuals in population are homozygous for same allele

Term
hardy weinberg principle
Definition
p2+2pq+q2=1
Term
major factors in evolutionary change
Definition
natural selection, genetic drift, gene flow
Term
genetic drift
Definition
allele frequencies fluctuate from generation to generation
Term
founder effect
Definition

few individuals become isolated from larger population

 

alleles diff. than larger population

Term
bottleneck effect
Definition
sudden reduction in population size due to change in environment
Term
directional selection
Definition
favours individuals at one end of phenotypic range
Term
disruptive selection
Definition
middle allele selected less. Favours ends of phenotypic range
Term
stabilizing selection
Definition
favours intermediate in phenotypic range
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