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Lecture 1
Amino Acids
60
Biochemistry
Professional
08/24/2011

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Term
Alpha-Amino Acid
Definition
Central Carbon with COOH, NH3, H, AND R
Term
Amino Acid has
Definition
NH2 and COOH
Term
Zwitterions
Definition
the amino group (+), carboxylate (-) physiological pH
Term
All Amino Acids except Glycine, the alpha carbon is bonded to four groups
Definition
carboxyl, amino, hydrogen, variable R
Term
phydiologic pH (7.4) the carboxyl group is dissociated forming
Definition
- Coo- and NH3+
Term
Amino Acids that have an asymmetric center at the alpha carbon can exist in two forms
Definition
D and L
Term
D & L
Definition
Mirror images
Term
Left (Levo) and Right (Dextro)
Definition
Rotate Polarized Light
Term
All aminos acids found in proteins are
Definition
L-Isomer
Term
D-aa
Definition
found in some antibiotics, plants, and bacterial cell wall
Term
Chiral
Definition
molecules cannot be superimposed on its mirror image
Term
No Chiral center
Definition
superimposable
Term
Chiral center
Definition
nonsuperimposable
Term
19 of 20 common amino acids are
Definition
chiral (nonsuperimposable)
Term
All amino acids have S-absolute configuration except
Definition
L-Cysteine is R
Term
Amino Acids found in proteins are mostly
Definition
L-isomer
Term
D-amino acids found in plant and cell walls of microorganism but not
Definition
in the synthesis of mammalian proteins
Term
D-amino are found in the cell walls of
Definition
gram negative bacteria polypetides
Term
Ranked strength of bonds molecules
Definition
Vander Waals
Term
Cell almost exclusively produce amino acids in L-isomer protein because
Definition
allows for optimum secondary interactions
Term
Chirality is important because
Definition
confers greater stereo selectivity
Term
Incorporation of D-amino acid in therapeutics
Definition
makes the resistant to enzyme catalyzed breakdown
Term
Most drugs today are produced as
Definition
racemic mixtures - L and D form
Term
Often only one enantiomer
Definition
is therapeutically relevant
Term
Nonpolar aliphatic 5
Definition
glycine, alanine, valine, leucine, tryptophan
Term
Nonpolar aliphatic 4
Definition
isoleucine, methionine, proline, phenylalamine
Term
Polar but uncharged
Definition
serine, glutamine, threonine, tyrosine, asparagine, cysteine
Term
Polar charged (-) acidic
Definition
aspartic acid, glutamic acid
Term
Polar charged (+) basic
Definition
lysine, arginine, histidine
Term
glycine is the only
Definition
achiral amino acid
Term
Alanine
Definition
Aliphatic amino acid, saturated carbon chain
Term
Glycine and alanine
Definition
to small to have hydrophobic effects in proteins
Term
aliphatic amino acids
Definition
have saturated hydrocarbon chains
Term
aliphatics
Definition
are hydrophobic
Term
hydrophobicity
Definition
drives these amino acids away from solvent providing a strong driving force for protein folding
Term
Proline
Definition
aliphatic side chain is covalently linked to the amide nitrogen
Term
Proline side chain and alpha amino N form a
Definition
rigid five member ring structure
Term
Tyrosine (OH) and Tryptophan (NH)
Definition
can form hydrogen bonds
Term
Tyrosine/Tryptophan are able to from hydrogen bonds so
Definition
more polar than phenylalanine
Term
3 aromatic aa's that absorv UV Light
Definition
phenylalanine, tyrosine, tryptophan
Term
Spectrophotometers
Definition
can be used to measure protein levels
Term
Serine and Threonine are more polar
Definition
therefore, hydrophilic
Term
Hydrophilic
Definition
able to form hydrogen bonds
Term
Cysteine contains sulfhydryl
Definition
or thiol group -SH
Term
Insulin stability
Definition
relies on disulfide bonds
Term
Positively charged amino acids
Definition
lysine, arginine, histidine
Term
Lysine, arginine, histidine 3
Definition
very hydrophilic
Term
Histidine can bind or release
Definition
protons near physiological pH
Term
Histidine residues are frequently
Definition
involved in enzyme catalysis
Term
Aspartate (Asp) and Glutamate (Glu)2
Definition
very hydrophilic
Term
B/L Acids
Definition
donate a hydrogen ion
Term
B/L Base
Definition
accept a hydrogen ion
Term
Stronger Acid
Definition
larger Ka
Term
Stronger Acid 2
Definition
Lower Pka
Term
A titration curve is a plot
Definition
of the pH weak acid against the degree of neutralization of the acid by strong base
Term
Buffers consist
Definition
weak acid + conjugate base
Term
Maximum Buffering capacity
Definition
pH = pKa
Term
Zwitterionic form
Definition
have positive and negative charge
Term
Amphoteric
Definition
substances have dual nature
Term
More hydrogens
Definition
generally mean hydrophobic
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