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Key Review Terms
Basics
72
Biochemistry
Undergraduate 4
09/01/2011

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Term
acceleration
Definition
the rate of change of velocity over time
Term
acid
Definition
a substance that reacts with a base
Term
activation energy
Definition
the energy that must be overcome in order for a chemical reaction to occur
Term
aerobic
Definition
requiring air
Term
amino acid
Definition
molecules that contain an amine group, a carboxylic acid, and an R group
Term
anaerobic
Definition
without oxygen
Term
an ion
Definition
is an atom or molecule in which the electrons and protons are not equal to one another
Term
antibody
Definition
a Y-shaped protein that is used to identify and neutralize foreign objects such as bacteria
Term
atomic number
Definition
is the number of protons found in the nucleus of an atom
Term
atomic theory
Definition
matter is composed of discrete units called atoms
Term
atomic weight
Definition
the ratio of the average mass of an atom of an element
Term
ATP
Definition
adenosine triphosphate
Term
autotrophic
Definition
an organism that produces complex organic compounds (carbohydrates, proteins & fats) from simple inorganic molecules using the sun, or chemical reactions
Term
auxotroph
Definition
the inability of an organism to synthesize organic compounds
Term
binary fission
Definition
asexual reproduction used by all prokaryotes
Term
bohr model
Definition
depicts the atom as a small, positively charged nucleus with electrons orbiting around it- the importance of the model was that it showed electrostatic forces holding it together
Term
buffer
Definition
an aqueous solution consisting of a weak acid and its conjugate base, or a weak base and its conjugate acid
Term
carbohydrate
Definition
composed of carbon, hydrogen, and oxygen-many purpose is to store energy
Term
carbonyl group
Definition
functional group composed of a carbon double bonded to an oxygen
Term
carboxyl group
Definition
a functional group composed of a carbonyl group and alcohol
Term
carboxylic acid
Definition
proton donor (bronsted-lowry acid)
Term
cell theory
Definition
the idea that cells are the basic unit of structure of every living thing
Term
chiral
Definition
(asymmetric) a molecule is chiral if it is not the same as its mirror image, it cannot be superimposed
Term
chloroplast
Definition

organelles found in plants and other eukayotes that conduct photosynthesis

 

they capture light to conserve free energy in the form of ATP

Term
chromosome
Definition
an organized structure of DNA and proteins found in cells
Term
closed system
Definition
in thermodynamics, a closed system can exchange energy (heat or work) but not matter, with its surroundings
Term
codon
Definition
a sequence of three nucleotides which specify which amino acid is joined in protein synthesis
Term
current
Definition
flow of electric charge through a medium
Term
cytoplasm
Definition
a thick liquid residing in the cell membrane holding all the organelles of the cell except for the nucleus
Term
electron
Definition
negatively charged particle
Term
electrophile
Definition
a reagent attracted to electrons, which accepts a pair of electrons in order to bond a nucleophile
Term
enantiomers
Definition
one of two stereoisomers which are mirror images of each other but not superimposible
Term
endocytosis
Definition
a process in which a cell absorbs substances by engulfing them
Term
endoplasmic reticulum
Definition

network of tubules, vesicles and cisternae

 

rough ER synthesizes proteins, smooth ER synthesizes  lipids and steriods, metabolizes carbohydrates and steriods and regulates calcium

Term
enthalpy
Definition
measure of the total energy of a thermodynamic system
Term
entropy
Definition
a thermodynamic property that can be used to find the energy available for work
Term
enzyme
Definition
proteins that catalyze chemical reactions
Term
equilibrium
Definition
a system when competing forces are balanced
Term
ethyl
Definition
alkyl substituent derived from ethane
Term
eukaryote
Definition
an organism whose cells contain complex structures enclosed within a membrane
Term
exocytoses
Definition
a process by which a cell directs the contents of the secretory vesicles out of the cell
Term
force
Definition
any influence which causes a free body to undergo a change in speed, a change in direction
Term
free energy
Definition
energy in a physical system that can be used for work
Term
gene
Definition
molecular unit of heredity 
Term
genome
Definition
the entirety of the organisms heredity
Term
germ theory
Definition
the idea that microorganisms are the cause of diseases
Term
golgi apparatus
Definition
processes and packages macromolecules, such as lipids and proteins, before theyre shipped out to their destination
Term
heterotrophic
Definition
an organism that cannot fix carbon, so it must eat organic carbon for growth
Term
hydrophobic
Definition
water fearing
Term
hydroxyl 
Definition
simple alcohol functional group
Term
laws of conservation
Definition
a measurable property of an isolated physical system that does not change
Term
laws of thermodynamics
Definition

zeroth-two systems are in equilibrium with a third, then all are in equilibrium

first-energy as work, energy as heat

second-over time differences in temperature, pressure will equilibriate

third-is a reference point (absolute zero) for entropy

Term
lipid
Definition
fats, sterols and fat-soluble vitamins, that store energy
Term
lysosomes
Definition
cellular organelles that contain hydrolase enzymes to break down waste materials and cellular debris
Term
mitochondria
Definition
found in eukaryotes and are the "cellular power plant"
Term
molecular orbital theory
Definition
method for determining molecular structure in which electrons are treated as moving under the influence of the nuclei
Term
molality
Definition
the amount of the constituent divided by the mass of the solvent
Term
momentum
Definition
the product of mass and velocity
Term
nucleophile
Definition
species that donates a pair of electrons to an electrophile to form a chemical bond
Term
open system
Definition
a system which exchanges energy and matter
Term
operator
Definition
a segment of DNA to which a transcription factor protein binds
Term
photon
Definition
basic unit of light and electromagnetic radiation
Term
plasmid
Definition
DNA molecule that is seperate, and that can replicate independently of the chromosomal DNA
Term
polymerase
Definition
primary function is polymerization of new DNA and RNA to an existing DNA template
Term
prokaryote
Definition
a group of organisms that lack a nucleus
Term
promoter
Definition
a region of DNA that facilitates transcription
Term
stereoisomers
Definition
have the same molecular formula and bond to bond orientation, but differ only, by their three dimensional orientation
Term
torque
Definition
the tendency of a force to rotate and object about its axis
Term
velocity
Definition
the measure of the rate and direction of change in position
Term
vitalism
Definition
a doctrine that the processes of life are not explicable by the laws of physics and chemistry alone and that life is in some part self-determining
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