| Term 
 
        | What are the 2 phases of Ig synthesis and secretion? |  | Definition 
 
        | 1.Ig Expression During B cell maturation. - Antigen-independent phase
 
 2. Ig Expression After B cell activation with an Ag
 - Antigen dependent phase
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        | Term 
 
        | Explain the different parts of the antigen independent phase |  | Definition 
 
        | (a) Ig gene rearrangement & recombinational events. ·Occurs during B cell development in the bone marrow
 ·Involves selection, recombination and assembly of gene segments to form a functional gene or transcription unit (i.e. a coding sequence) for L & H chains.
 
 ·Functional units for kappa, lambda & H chains arrange separately
 ·RAG-1 & RAG-2 gene encoded enzymes
 ·Activation of promoters and enhancers
 
 (b)Transcription and translation of L & H genes results in a surface Ig, the B cell receptor for Ag
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        | Term 
 
        | Explain light chain rearrangement |  | Definition 
 
        | Light chain DNA undergoes V-J rearrangements 
 In gene rearrangement one of the V genes is randomly spliced to one of the J genes
 
 This rearranged DNA then undergoes transcription and splicing to produce mature mRNA
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        | Term 
 
        | Explain gene rearrangement for the H chains |  | Definition 
 
        | Heavy chain DNA undergoes V-D-J rearrangements 
 It is two separate rearrangement events
 
 A Dh (diversity gene) segment randomly joins to a Jh (joining gene) segment
 
 Then the resulting DhJh segment randomly joins a Vh (variable gene) segment to produce a VhDhJh segment
 
 This undergoes transcription and splicing to generate a mature mRNA
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        | Term 
 
        | What are the basics of Ig expression events? |  | Definition 
 
        | * IgM is the first Ig; closely followed by IgD. Alternate splicing of a primary mRNA transcript leads to IgM or IgD 
 * Other Ig classes are produced later, usually after Ag stimulation (step 2 during B cell activation.
 
 * Each B cell (+ its clones) produces an Ab with a unique or distinctive Ag-binding specificity
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        | Term 
 
        | Explain the antigen-dependent events of B cell activation |  | Definition 
 
        | *Activation occurs when surface Ig binds its Ag. 
 *IgM is also the first Ig to be secreted.
 
 *T cell help and cytokines function in activation, especially when other Ig isotypes are produced.
 
 *Activated B cells divide and mature into antibody-secreting cells called plasma cells.
 
 NOTE: Secreted Ig has the same Ag-binding specificity as the original surface-expressed Ig (changes occur at the Constant region of the H chain, CH, only
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        | Term 
 
        | What is the difference between membrane Ig's and secreted Ig's |  | Definition 
 
        | *Difference between Secreted Ig (sIg) & Membrane-bound Ig (mIg) is at the carboxy end of the H chain: 
 *The mIg has a transmembrane portion due to alternate splicing of a primary transcript that retains a small extra exon at the 3’ of the last constant domain
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        | Term 
 
        | How are different classes of Ig's produced? |  | Definition 
 
        | Class switching or isotype switch 
 - Usually it is from IgM (or IgD) to IgG, IgA or IgE
 
 - Involves a second gene rearrangement/recombination event
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        | Term 
 
        | What are the basics of class switching? |  | Definition 
 
        | Class switching occurs after the V-D-J rearrangements 
 The VhDhJh segment can switch the Ch segment it is going to be transcribed with which switches the class of Ig
 
 The mechanism is believed to involve formation of a DNA loop and the recombination involves the switch regions of the Ch genes
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        | Term 
 
        | What is clonal selection theory? |  | Definition 
 
        | *Theory explains Ag-specificity of Antibodies (Abs) during an immune response 
 *When an Ag enters the body, it is bound by only a few B cells equipped with the matching membrane Igs. These Ag-bound B cells are activated; they differentiate into plasma cells secreting only the Ab specific for the Ag. Possess same binding specificity as the membrane Ig
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        | Term 
 
        | What are the mechanisms for generating Ig diversity? |  | Definition 
 
        | Variable segments (V) 
 Diversity segments (D) - heavy chain only
 
 Rare reading of D segments in 3 frames
 
 Joining segments (J)
 
 Joints with N and P nucleotides
 
 Often somatic receptor mutations
 
 Total diversity ~ 10^14
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        | Term 
 
        | What are the different mechanisms for T cell receptor (TCR) diversity? |  | Definition 
 
        | Variable segments (V) 
 Diversity segments (D) - beta and delta only
 
 Often reading of D segments in 3 frames
 
 Joining segments (J)
 
 Joints with N and P nucleotides
 
 Total diversity ~ 10^18
 
 Higher diversity (compared to Ig's) due to much increased numbers of J segments
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        | Term 
 
        | What is the Ig superfamily? |  | Definition 
 
        | Other immune molecules that 
 ·Share Ig-like domain organization
 
 ·Most are involved in host defense
 
 ·Function as: receptors, co-receptors, cell-cell adhesion, inflammation, co-stimulation, cell activation, etc
 
 ex's - TCR, MHC Class I and II, CD4, CD8
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        | Term 
 
        | Explain the major histocompatibility complex (MHC) |  | Definition 
 
        | ·HLA (human leukocyte Antigens) 
 ·Located in chromosome 6 (except beta2M)
 
 ·2 major classes: Class I & Class II genes
 
 ·Mol bind Ag and present to T cell for activation
 
 ·Class I molecules/Ags: All somatic cells; Control CD8 T cells
 
 ·Class II molecules/Ags: Select cells (APCs, thymic epith); 	Control CD4 T cells
 
 ·Transplantation Ags: control graft rejection
 
 ·MHC restriction
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        | Term 
 
        | What are the characteristics of the T cell receptor (TcR)? |  | Definition 
 
        | ·Receptor for Ag binding by T cells 
 ·2 types: alpha-beta & delta-gamma TcR
 
 ·Genes rearranged during T cell maturation
 
 ·Enormous diversity of specificities
 
 ·Only bind Ag complexed with an MHC molecule
 
 ·Important for T cell recognition, activation & function
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        | Term 
 
        | What is the structure of the T cell receptor? |  | Definition 
 
        | It is a heterodimer composed of transmembrane chains alpha and beta. 
 Each chain contains a variable region (V) and a constant region (C)
 
 They are connected by a disulfide bond in their hinge regions
 
 Together they resemble a membrane bound Fab fragment of an Ig
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        | Term 
 
        | How does gene rearrangement in the T cell receptor work? |  | Definition 
 
        | The alpha chain undergoes VJ rearrangement similarly to light chain rearrangement 
 The beta chain undergoes VDJ rearrangement similarly to heavy chain rearrangement
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        | Term 
 
        | What are the characteristics of co-receptors, adhesion, and co-stimulatory molecules? |  | Definition 
 
        | ·Important for immune activation and function; cellular interaction; inflammation 
 ·APC-T cell interaction
 
 ·CTL-Target binding
 
 ·Signal transduction
 
 ·Representative co-receptors: CD3 complex, CD4, CD8, Ig-alpha, Ig-beta
 
 * Representative co-stimulatory molecules: LFA-1 (integrin), CD2, CD28 (on T cells); ICAM-1, LFA-3, B7 on APCs)
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        | Term 
 
        | What are the characteristics of cytokines, chemokines, and interleukin? |  | Definition 
 
        | Important in immune initiation/ expansion, function, inflammation 
 ·Growth factors, cell activation, immunoregulation
 
 ·Representative cytokines: Interleukin (IL)-1, IL-2, IL-3, IL-4, IL-5, IL-6, IL-7, IL-8, IL-10, IL-12, 	interferon gamma (IFN-gamma), tumor necrosis factor 	alpha (TNF-alpha)
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