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gen path final (anns notes)
ann notes
170
Science
Pre-School
12/12/2010

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Term
Burkitt's Lymphoma
Definition
translocation of chromosome 8 and 14
Term
Chronic melogenous leukemia (Philly chromosome)
Definition
translocation to chromosome 22 and 9

dna structural change
Term
acute leukemia
Definition
trisomy of chromosome 8
Term
B cell leukemia
Definition
trisomy of chromose 12
Term
colon cancer
Definition
DELETION on chromosome 5 and 18
Term
G1 - S checkpoint
Definition

delay of START of new cycle

 

Term
S-phase checkpoint
Definition
delays DNA sysnthesis
Term
S-M checkpoint
Definition
delays MITOSIS
Term
BCL-2 gene
Definition
inhibits apoptosis
Term
BAX gene
Definition
stimulates apoptosis
Term
P53 gene
Definition
stimulates apotosis by activation of BAX gene
Term
Extrinsic pathway of apoptosis
Definition
via death receptors
Term
RAS
Definition

 signal transducer / transducing protein - G protein (gtpase) - used for cell proliferation

MOST COMMON POINT MUTATION RAS-GTP = on state RAS-GDP = off state

(NF-1 inhibits)

Term
NF-1
Definition
inhibistor of signal transducer (RAS)
Term
B-catenin
Definition

transcription regulator (goes to nucleus)

inhibited by APC

Term
MYC
Definition

transcription factor / Proto-oncogene

translocation of gene

unregulated expression of many genes

involved with BURKITTS LYMPHOMA

Term
Cyclin D, CDK4
Definition
cell cycle regulators
Term
RB
Definition

cell cycle inhibitors

prevent excessive cell growth by inhibiting cell cycle progression until a cell is ready to divide

 

tumor suppressor protein that is dysfunctional in many types of cancer

 

Should an oncogenic protein, such as those produced by cells infected by high-risk types of human papillomaviruses, bind and inactivate pRb, this can lead to cancer.

Term
2 methods of epigenetic silencing of supressor genes (ie. p53)
Definition
1) DNA hpermethylation
2) virus binding -> HPV bind to Rb and P53 gene
Term
activation of oncogene requires?
Definition
expression of only 1 allele (dominant gene)

-increased production of growth factors
-incresased expression of growth factor receptors
-increased activity of tyrosiune kinase
***increased activity of RAS ***
Term
raf, mos, pim-1 are examples of
Definition
cytoplasmic oncogenes - transmits signal to the nucleus
Term
myc, erb-A, fos
Definition
nuclear oncogene - persistent expression of nuclear gtranscription factor
PREVENT CELL DIFFERENTATION
Term
inactivation of suppressor gene requires?
Definition
HOMOzygous expression of both alleles, recessive gene

- loss of contrrol over ras activity
- loss of contact inhibition
-loss of control over entrance into cell cycle
-regulation of expression of other genes
Term
adenomatous colon polyposis involves
Definition
NON-expression of c-myc gnee
one allele mutated = benign polyp
both allele mutated = maligant poly
Term
Li-Fraumeni Syndrome
Definition
***mutattion of p53 gene*** on chromosome 17 , MOST COMMON SUPPRESSOR GENE MUTATION
Term
colon cancer
Definition
inactivation on DCC gene on chromosome 18
Term
rentoblastoma
Definition
mutation of Rb gene on chromosome 13
Term
neurofibromatosis
Definition
loss of NF1 gene - leading to loss of control of RAS activity
Term
BRCA gene
Definition
repair genes / breast cancer
Term
Tumor progression
Definition
monoclonal in origin
proliferating cells of growing tumor become heterogenous in geno/pheno type
Term
malignant cells
Definition
more asss

less catenin
Term
carcinomas primarly spread via
Definition
lymphatics
Term
sarcomas primary spread via
Definition
blood vessels
Term
autoimmune factors - used for suppression of immune response to tumor mass
Definition
IL8, IL10, IGF, TGF
Term
Neoplastic (definition)
Definition
abnormal growth without any kind of stimulus

CELLS NO LONGER RESPOND TO ANY KIND OF REGULATION OR PROLIFERATION
Term
benign tumor
Definition
localized and encapsulated
Term
Anaplasia
Definition
alwasy associated with malignancy

peliomorphic
hyperchromatic
abnormal mitotic figures
increased nucleus : cytoplasym ratio

-side note anaplasia means to form backward
-reversion of differentiation of cell
Term
teratoma
Definition
tumors from totipotential stem cells (all 3 germ layers)
Term
leiomyoma
Definition
tumor or smooth muscle
Benign tumor
Term
rhabdomyoma tumor
Definition
from skeletal muscle
Benign tumor
Term
papilloma
Definition
NON-neoplastic over growth in during embryonic growth

Benign tumor
Term
carcinoma
Definition
malignant cancer tumor from epithelium

squamous cell carcinoma
melanocarcinoma
adenocarcinoma
renal cell carcinoma
Term
sarcomas
Definition
malignant tumors of connective tissue (mesencnchyme)

fibrosarcoma
leiomyo sarcoma (smooth muscle)
chondro sarcoma (cartilage)
osteogenic sarcoma (bone)
Term
leukemia
Definition
malignant proliferation of WBC
Term
schirrhous
Definition
hard tumor that has dense fibrous tissue stoma
Term
Bowmens disease
Definition
carcinoma - in situ
neoplastic epidermal cells with in epidermis only
Term
Carcinoma in situ
Definition
NON invasive. ...
full thickness of abnormal growth - neoplasm remains at the original start site . ..without breatking breaking into basemenet membrane
flat (exception colon polyp, papillary cancer of bladder)
Term
invasive carcinoma
Definition
breached BM and underlying CT
Term
metaaplasia
Definition
non-neoplastic

protective responsse of cellular adaptation - REVERSIBLE
Term
dysplasia
Definition
non-neoplastic

disorderly growht patterns (start close to basement membrane)
-preceded by chronic irritation and inflamation
- prolonged sever dysplasia can transform into malignant neoplasm

hypermitotic
disordered cytoarchitecture
pleiomorphism
hyperchromatism
Term
dyskeratosis
Definition
dysplasia in the oral cavity
Term
melena
Definition
blood in stool (neoplasm in GI tract)
Term
cachexia
Definition
wasting syndrome - becomoing weaker by host immune response to tumor
Term
hematuria
Definition
blood in urine - indicative of neoplasm in urinary tract
Term
grading of neoplasm
Definition
grade 1- well defined cell (low anaplasia
grade 2,3 - moderate differentiated
grade 4 - poorly differentiated, lots of anaplasia
Term
staging of neoplasm
Definition
T - size of tumor (t0 = carcinoma in situ, t4 huge tumor)
N - extent of regional lymph node (n1 - 1 lymph node invlovled)
M - absence or presence of metastasis (m1 = one distant metastsasis) NOT lymph node (i.e. liver, brain)
Term
what is a proto-oncogene?
Definition
a normal gene that can become an oncogene due to mutations or increased expression. Proto-oncogenes code for proteins that help to regulate cell growth and differentiation. Proto-oncogenes are often involved in signal transduction and execution of mitogenic signals, usually through their protein products. Upon activation, a proto-oncogene (or its product) becomes a tumor-inducing agent, an oncogene.[7] Examples of proto-oncogenes include RAS, WNT, MYC, ERK, and TRK.
Term
Cadhedrins, catenins
Definition
loss or missing = metastasis
Term
ionizing radiation (define, 4 examples)
Definition
produces hydroxyl radical from water

XRAY
Radon
gamma ray
cosmic ray
Term
UV
Definition
NON IONIZING (dfn - vibration and rotation of atom)

UV-A
UV-B
UV-C

Sunblock = stops UV-a and UV b
window = stops UVb and UVc
Term
chronic effect of UV radiation
Definition
degradation of type 1 collagen
increased expression of elastin gene
increased expression of MMP (degrade collagen)

CT changes accumulate over time and are irreversible
Term
Toxic v Hypersensivity (difference is??)
Definition
dose and predictability (toxic more defined)
Term
Cholorform and Carbon tetrachloride
Definition
affect - liver and CNS
Term
trichloroethylene
Definition
CNS
Term
benzene
Definition
affect
acute - CNS - respiratory failure
chronic - CNS - bone marrow (leukenmia, anemia, myeloma)
Term
2,4 dicholorophenoxyacetic acid
Definition
hemapoietic malignancies in farmer (DDT??)
Term
tertracholoro dibenzodioxin (TCDD)
Definition
agent orange byproduct - affects animals not humans
Term
ozone
Definition
high layer - protective
low layer - destructive
Term
population at risk of air pollutants
Definition
children, old people and ashmatics
Term
carbon monoxide result
Definition
severe hypoxia
5~8% usually in smoker blood
Term
PICA
Definition
hunger for substance not fit for food
(paint)
Term
Ataxia
Definition
dysfunction of the parts of the nervous system . . lead to gait (akward stance - result of LEAD exposure in children
Term
lead toxicity (key organs)
Definition
KIDNEY (nephropathy) - affects proximal tubular cells
CNS
Hemopoietic system - anemia

CNS damage irreversible
hematological and renal are reversible
Term
Minamata disease
Definition
mercury toxicity of CNS
Term
Nephrotoxicity
Definition
Mercury toxicity - proteinuria, glomerulonephritis
Term
neuropathy
Definition
lead toxicity. ..

affects proxicaml tubluar cells

aminoaciduria, glycosuria, hyperphosphaturia
Term
Marasmus
Definition
deficiency of calories from ALL SOURCES - under nutrition is more comon
Term
Kwashiorkor
Definition
malnutrition in children due to lack of protein . . and high in carbs. .more sever the marasmus - under nutrition is more common
Term
NOMA
Definition
bacteria destruction of oral tissue and oral facial tissue - due to low immune response due to malnutrition . ..
Term
Sialodenosis due to malnutrition
Definition
increase in # and size of acrini of alivary gland due to malnutrition .
Term
Vitamen B only from animal product
Definition
Cyanocobalamine (B12)
Term
Vitamen
B1 name
B1 deficiency
Definition
Thiamin (beri-beri aka for b1 difficiency)
affects thining / wasting of person
Term
Vitamen
B2 name
B2 deficiency
Definition
Riboflavin
Symptom of deficiency - angular chelitas, smooth tongue (no papilla)
Term
Vitamen
B3 name
B3 deficiency
Definition
niacin
PELLAGRA- aka deficiency
symptons - pigmentation, mucosal atrophy
Term
Vitamen
B6 name
B6 deficiency
Definition
pyridoxine
symotopms - Anemia, Seizures, CNS


COULD BE CAUSED BY MEDICATIONS
Term
pernicious anemia
Definition
B12 deficiency - due to poor absorption, destruction of parietal cells

LACK OF PAPILLA on tongue

AKA megalobastic anemia
Term
echymosis
Definition
purpura (bleeding disorder) of skin - LARGE AREA

could because of vitamen C deficiency
Term
Vitamen D function
Vitamen D deficiency
Definition
fxn: promote calcium and phosphate absorption in small intestine
defieciency: lack of diet and sunlight
Term
Rickets
Definition
vitamen D deficeint in kids
Term
osteomalcia
Definition
hypocalcemia in aduclts
Term
osteomalcia
Definition
hypocalcemia in aduclts
Term
hypercalcemia
Definition
weekness and headaches
NEPHROLITHISIS (kidney stones)
Term
Vitamen K
Definition
necessary for prothrombin, factor 7,9, 10 - coagulation
Term
IRON
Definition
helps with hemoglobin production - anemia

GLOSSITIS - finger nail problem

DEPAPILATION of tongue
Term
IRON
Definition
helps with hemoglobin production - anemia

GLOSSITIS - finger nail problem

DEPAPILATION of tongue
Term
PLummer - Vinson Syndrome
Definition
chronic iron deficiency
incresead of oral cancer
atrophy of upper alimentary tract
Term
Goiter
Definition
iodine deficiency - prevention not treatement

increased TSH - hyperplasia and hypertrophy of follicular cells
Term
OBESE
Definition
increase in adipose tissue
BMI of 30 or greater
caused by improved socioeconomic conditions

DIFFUSE FAT ACCUMULATES IN SUBCUTANEOUS TISSUE
Term
LIPOSTAT
Definition
iset point that regulates food intake and energy expenditures
Term
Leptin
Definition
control adipose tissue - decrease appetitie and increase energy use
Term
sirtuins
Definition
PROTEIN help with calorie restriction
Term
RESveratrol
Definition
found in red wine - mimic calorie restriction
Term
Melanoma
Definition
exception to naming convention

is a MALIGNANT neoplasm of melanocytes; benign counterpart is called a melanocytic nevus
Term
•Lymphoma
Definition
exception to naming convention
is a malignant neoplasm of lymphoid cells localized in peripheral tissues; no benign counterpart
Term
leukemia
Definition
Malignant neoplasm of blood cells that involves the bone marrow
Term
hepatoma
Definition
is a hepatocellular carincoma (MALIGNENT)
Term
Is melanoma a an epithelial neoplasm?
Definition
NO!

Melanocytes
–Only reside in epithelia
–Derive from neural crest
–Do not form structures characteristic of epithelia (glands, surface barriers)
–Do not express epithelial cytoskeletal proteins called keratins
Term
•Hamartoma
Definition
–BENINGN Developmental anomaly of disorganized but LOTS of mature cells and tissues normal to the specific site
–Stops growing when other growth in the area stops
Term
choristoma?
Definition
morphologically normal tissue in the wrong place
–Example: Cartilagenous choristoma of the tongue
Term
lots of mitotic structures in benign tumor?
Definition
- no because of slow growth rate
Term
growth rate of malignant tumor??
Definition
- rapid or SLOW
Term
what is the metastasis ability in malignant tissue?
Definition
Frequently present; more likely in less differentiated
Term
high growth fraction means what for tummors?
Definition
rapid clinical course
Term
benign neoplasm of the epidermis exhibit
Definition
***EXOPHITIC GROWTH***
Term
malignant neoplasm of the epidermis exhibit
Definition
endophytic and infiltrative growth
Term
what is uterus leiomyoma?
Definition
begnin - well-circumscribed localized growth
Term
sentinel lymph node?
Definition
defined as “the first node in a regional lymphatic basin that receives lymph flow from the primary MALIGNANT tumor.”
Term
•Hematogenous of malignant tumor via?
Definition
Veins more likely than arteries
Term
Direct seeding of malignant tumor happens where?
Definition
peritoneal cavity - most comon
Term
what is cancer?
Definition
A chronic disease involving multiple tissue compartments (paryencyhma + stroma)
Term
what is the process of carcinogenesis?
Definition
Carcinogenesis: A multistep process at both the phenotypic and the genetic levels (non lethal genetic damage)
Term
protooncogenes ?
Definition
•One damaged allele often enough to transform a cell
***growth promoting gene**
CARCINOGENSIS - potentional
normal cellular counterpart of an oncogene
Term
cacinogenesis of non-lethal genetic mutation - growth inhibiting tumor suppressor gene
Definition
BOTH gene need to be damaged
Term
cacinogenesis of non-lethal genetic mutation - dissregulation of apoptosis
Definition
1 or 2 alleles need to be modified
Term
cacinogenesis of non-lethal genetic mutation - DNA repair
Definition
both alleles
Term
central to malignant transformation?
Definition
Loss of normal cell-cycle control is central to malignant transformation. At least one key regulator
Term
what happens at the G2/M check point?
Definition
it checks for damaged or unduplicated DNA
Term
what happens at the G1/S checkpoint?
Definition
Checks for DNA damage - regulated by p53
Term
cell cycle
Definition
Resting (G0 stage), G1, S, G2, M phase
G(1,2) = growth
S = synthesis
Term
what are the positive regulators in the cell cycle?
Definition
***alter state of retinoblatoma -help sensitivity ***
•Positive regulators: cyclins, cyclin-dependent kinases (CDKs)
Term
Restriction point of Cell Cycle
Definition
***Erythroblastoma gene***
Term
what are the negative regulators in the cell cycle?
Definition
CDK inhibitors
–Some CDK inhibitors interfere with the release of the Rb protein
Term
what is the (RB) tumor suppressor gene?
Definition
RB gene is in charge of the cell cycle restriction point; loss of function of both copies is needed
Term
where is the first checkpoint located?
Definition
*** depends on p53
-The first checkpoint is at the G1/S transition, when the quality of the existing DNA is evaluated
Term
where is the second checkpoint located?
Definition
p53 NOT NECESSARY but maybe necessary
The second checkpoint is at the G2/M transition when the quality of the newly synthesized DNA is evaluated
Term
what is the p53 tumor suppressor gene?
Definition
•The main role of p53 in the cell cycle is one of surveillance, triggering checkpoint controls that 1) slow down or stop cell-cycle progression of damaged cells, or 2) cause apoptosis.
Term
how many copies of the P53 gene need to be diabled to produce cancer?
Definition
•P53 gene: both copies must be disabled to produce cancer . 1 bad allele = 4 times more likely to get cancer
Term
how does tumor form?
Definition
initiator (carcinogen) then promoter (cell proliferation of transformed cell, ***need to be close together) then time
Term
what are some examples of initiators?
Definition
Mutagenic, highly reactive with DNA
•Must be given before the promoting agent
•A single dose may be sufficient
•The effects are additive
•The effects are irreversible
Term
what are examples of promotors?
Definition
****Have to be applied repeatedly after initiator
•Non-tumorigenic by themselves
•Inhibit differentiation

•KEY effect: cause cells to proliferate
Term
what are two oncogenic DNA viruses?
Definition
Human papillomavirus (HPV):
–epithelial pathogen
•Epstein-Barr virus (EBV):
–B cell and epithelial pathogen
Term
EBV does what?
Definition
EBV immortalizes B cells and induces polyclonal B cell expansion, but does not target tumor suppressor genes.

Other events lead to oncogene MYC activation (translocation of MYC from chromosome 8 to chromosome 14 t(8;14). Mutations in tumor suppressor genes are associated with progressions
Term
what is 9p21?
Definition
Loss of heterozygosity at 9p21 includes loss of a tumor suppressor (inhibitor of the cell cycle)
Term
malignant cells become more serious because of blood vessels, what are the two growth factors?
Definition
•Sustained formation of new blood vessels: tumor parenchyma cells AND stromal cells can make
–Vascular endothelial growth factor (VEGF)
–Basic fibroblast growth factor (bFGF)
Term
what is 9p21?
Definition
Loss of heterozygosity at 9p21 includes loss of a tumor suppressor (inhibitor of the cell cycle)
Term
hepatitis B virus
Definition
Liver cancer is associated
Term
The HPV infection
Definition
cervical cancer (head and neck cancer) is associated with
Term
schistosomiasis
Definition
bladder cancer is associated with:
Term
cholangiocarcinoma
Definition
liver fluke infection is associated with:
Term
what are the general rules of clinical manifestations of neoplasia?
Definition
¨Benign neoplasms are more common than malignant ones
¨Benign neoplasms associated with vital structures can be fatal
¨With a few exceptions, all masses require histopathologic evaluation
Term
what is meant by clinical signs?
Definition
¡Objective manifestations of disease that can be observed by other people, not just the patient - MEASURED!!
Term
what is meant by clinical symptoms?
Definition
¡Subjective manifestations experienced by patient, but not observable by others
Term
what is acanthosis nigricans associated with?
Definition
hepatocellular carcinoma
Term
colon cancer molecular markers include
Definition
p53, APC, RAS mutations in stool and serum
Term
Compare and contrast the structure of HLA and B/T Cell Receptors.
Definition
-HLA I and BCR have heavy and light chains
-HLAII and TCR have alpha and beta
Term
Describe the types of antigens recognized by BCR.
Definition
-everything, carbs, proteins, lipids, nucleic acids, glycolipids, proteoglycans
Term
Describe the types of antigens recognized by TCR.
Definition
peptides on MHC/HLA
Term
Compare and contrast the structure of B and T cell receptors.
Definition
-TCR – alpha chain, and beta chain
-membrane bound, never secreted, not flexible
-can only bind 1 antigen at a time
-BCR- membrane bound, secreted w/o cytoplasmic tail
can recognize 2 antigens
Term
Describe the mechanisms that provide variety for HLA molecules.
Definition
-polygenism / -polymorphism
Term
Describe the source of antigen for HLA class I molecules.
Definition
-cytoplasm/ER
Term
Describe the source of antigen for HLA class II molecules.
Definition
-vesicles
-Mphages, DC and B Cells
-DC activate TCell which activate B-Cell
Term
Virus can be detected by MHC class 1 or 2?
Definition
both
Term
Describe HLA class II biosynthesis.
Definition
vacuole/lysosome
-making alpha chain/beta chain in ER
-add invariant chain to MHCII
-invariant chain steers vesicle gets in contact with vesicles with EC bacterial piece and
HLADM (in endolysosome)
-invariant chain gets chomped, only CLIP left in MHCII
-if infection HLADM removes CLIP
-bacterial proteins enter groove
-go to surface
Term
anchor residues of HLA. ...
Definition
only need 1 -2 aa residues to bind peptide in binding groove
Term
Where do B cells home to in a lymph node?
Definition
-cap of germinal center (peripheral of lymph tissue)
Term
What is the first step in B cell activation?
Definition
-cross-linking
-multiple copies bound by same receptor

***-C3d binds to CD21/CR2 on Bcell****
Term
 endocytosis of pathogen (describe)
Definition
-puts pathogen onto MHC 2
****go to paracortex
-****activated TH2 cells at paracortex link recognize Bcell with MHC2
-linked recognition!!!
-CD40 (bcell) and CD40L on tcell
=same principle as costimulation (CD28 and B7.1/7.2 on DC)
B Cell proliferation
Term
How does C3d (a product of C3b) facilitate B cell activation?
Definition
-binds to CD21/CR2 on Bcells
-lower threshold of BCR binding by 10 per C3d
Term
Describe the first cell with which B cells interact?
Definition
-dendritic cells with antigen presenting on its surface

-BCR and pathogen on dendritic cell
-also C3d binding to CD21/CR2 helps reduce # of BCR required

Where does that interaction occur?
-on cap of germinal center

What happens to B cells after the interaction?
-clonal proliferation in primary follicle
-that area of proliferation then becomes the secondary follicle
Term
There are three fates of the cloned daughter B cells.
Definition
-plasma cells, make antibody
-lose L-selectin and pick up VLA4 (like TH1)
-go to site of infection and release antibodies
-memory cells, go to bone marrow
-somatic hypermutation, to make higher affinity antibody, random changes in V region
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