Alimentary Tract

Cattle

bacterial

Actinobacillus lignieresii

Actinomyces bovis

Fusobacterium necrophorum

Enterotoxigenic Escherichia coli

NTEC

STEC

Salmonella Enterica

Clostridium perfringens

Mycobacterium avium ssp. paratuberculosis

Alimentary Tract

Cattle

Viruses

Bovine Rotavirus-(Reo, dsRNA, nonenv)

Bovine Coronavirus (+ssRNA, env.)

BVDV-(Pesti, +ssRNA, env)

Winter Dysentery (coronavirus, +ssRNA, env)

Rinderpest (Paramyxo, -ssRNA, env)

Alimentary Tract

Horses

Bacteria

Salmonella enterica(-, non lact. ferm, rod)

Clostridium dificile (+, spore form, anaer, rod)

Clostridium perfringens

 Clostridium piliforme

Alimentary tract

horses

virus

alimentary tract

swine

bacteria

Fusobacterium necrophorum (-, obl anaer, rod, fil)

ETEC (-, rod, fac anaer)

NTEC (-, rod, fac anaer)

STEC (-, rod, fac anaer)

Salmonella enterica (-, rod, nonlact. ferm,)

Lawsonia intracellularis (-, obl.intrac, curved rod)

Brachyspira hyodysenteria (-, spirochete)

Clostridium perfringens (+, spore form, anaer rod)

Alimentary tract

swine

virus

Rotavirus (reo,dsDNA, unenv)

Transmissable Gastroenteritis virus (corona, +ssRNA, env)

Hog Cholera (pesti, +ssRNA, env)

African Swine Fever (Asfaro, dsDNA)

Vesicular Exanthema (calici, +ssRNA, nonenv)

alimentary tract

sheep

bacteria

ETEC (-, rod, fac, anaer)

C. perfringens (+, spore forming, anaer rod)

Mycobacterium avium ssp. paratuberculosis (+, acid fast, oblig aero, rod)

Alimentary tract

sheep

virus

Peste des pestitis rum

Rift Valley Fever (bunya, -ssRNA, env)

Border Dz (pesti, +ssRNA, env)

alimentary tract

goats

bacteria

C. perfringens (+, spore forming, anaer. rod)

Mycobacterium avium ssp. paratuberculosis(+, acid fast, obli aerobe, rod)

Alimentary tract

goats

virus

Pestis de petitis

Rift Valley Fever (Bunya, -ssRNA, env)

Alimentary tract

dogs

bacteria

Actinomyces viscosus, hordeovulneris (+, film, fac. anaer, rod)

ETEC (-, fac anaer,rod)

Salmonella enterica (-, nonlactose ferm, rod)

Campylobacter jejuni (-, microaero, curved rod)

C. perfringens (+, spore form, fac anaer, rod)

C. piliforme(variable, spore form, fac anaer, rod)

Prototheca zopfii (saprophytic, achlorophyllus algae)

Alimentary tract

dogs

virus

Canine parvovirus (parvo, ssDNA, nonenv)

canine coronavirus (corona, +ssRNA, env)

Canine Distemper Virus (paramyxo, -ssRNA,env)

Infectious canine hepatitis (adeno, dsDNA, nonenv)

Alimentary tract

cats

bacteria

Salmonella enterica (-, nonlactose ferm, rod)

C.jejuni, C. coli (-, microaero, curved rod)

Yersinia enterocolitica (-, nonlactose ferm, rod)

alimentary tract

cats

virus

FECV and FIP (corona, +ssRNA, env)

Feline Panleukopenia (parvo, ssDNA, nonenv)

Feline rotavirus (reo, dsRNA, nonenv)

Alimentary tract

chickens and turkeys

bacteria

C. perfringens (+, spore form, fac anaer, rod)

Salmonella enterica (-, nonlact. ferm, rod)

Candida albicans(oval budding yeast)

Alimentary tract

chickens and turkeys

virus

Newcastle disease (paramyxo, -ssRNA, env)

Hemorrhagic enteritis turkeys (adeno, dsDNA, nonenv)

avian rotavirus (reo, dsRNA, nonenv)

Alimentary tract

Rabbits and mice

bacteria and virus

Rabbits

NTEC

C.piliforme

Mice

C. piliforme

Ectromelia (parapox pox, dsDNA, env and nonenv)

alimentary tract

zoonotic

NTEC, ETEC

Salmonella enterica

Campylobacter jejuni, coli

Respiratory

Cattle

bacteria

Manheimia hemolytica (-, bipolar, fac anaer, encaps)

Pasteurella multocida (-, bipolar, fac anaer)

Histophilus somni (-, rod, anaer)

Mycobacterium bovis(-, acid fast, rod)

Mycoplamsa mycoides ssp. mycoides (small colony type) (-, pleomorphic)

Mycoplasma bovis

Mycoplasma dispar

Respiratory

cattle

virus

BRSV (paramyxo, -ssRNA, env)

IBR (herpes, dsDNA, env)

Parainfluenza 3 (paramyxo, -ssRNA, env)

Bovine adenovirus

Malignant Catarrhal Fever(gamma herpes, dsDNA, env)

Rinderpest (paramyxo)

FMDV (apthro picorno, +ssRNA, unenv)

BVDV (pesti, +ssRNA, env)

Rift Valle Fever (Bunya, -ssRNA, env)

Respiratory

horses

bacteria

Actinobacillus equuli (-, rod, fac anaer)

Streptococcus equi ssp. equi (+, cocci, aerotolerant)

Strep. equi ssp zooepidemicus (+, cocci)

Rhodococcus equi (+, aer, cocci/rod, encaps)

Mycoplasma felis (-, pleiomorphic)

Aspergillus sp. (mold, phialoconidiae)

Obligate anaerobes

Respiratory

horses

virus

Equine herpes 1, 4 (dsDNA, env)

Equine rhinovirus (corona, +ssRNA,env)

Equine influenza (orthomyxo, -ssRNA, env)

Equine adenovirus (dsDNA, nonenv)

African Horse Sickness (reovirus, dsRNA, nonenv)

Respiratory

swine

bacteria

Pastuerella multocida (-, bipolar, fac anaer)

Actinobacillus pleuropneumoniae (-,fac anaer,bac/coccobacilli)

Haemophilus parasuis(-, fac anaer, rod, NAD+)

Bordetella bronchiseptica (-, obl aero, coccobacillus)

Streptococus suis (+, cocci,aerotolerant)

Mycoplasma hypopneumoniae(-, pleiomorphic)

Respiratory

swine

virus

Swine influenza (orthomyxo, -ssRNA, env)

Pseudorabies (herpes, dsDNA, env)

Upper Respiratory disease (corona, +ssRNA, env)

FMDV (picorno, +ssRNA, nonenv)

PRRSV (Arterivirus, +ssRNA, env)

African Swine Fever (Asfarvirus,dsDNA,env)

Hog Cholera (pesti,+ssRNA, env)

Vesicular stomatits (Rhabdo,-ssRNA, env)

vesicular exanthema (calici, +ssRNA, unenv)

Respiratory

sheep

bacteria

Mannheimia haemolytica (-, bipolar, encap, fac anaer)

Pasteurella multocida (-, bipolar, fac anaer)

Mycoplasma ovipneumoniae (pleiomorphic,-)

respiratory

sheep

virus

Bluetongue (reo,dsRNA, unenv)

Visna Maedi, OPP (lenti, 2 cp.ssRNA, env)

FMDV (apthro picorno, +ssRNA, nonenv)

Sheep/goat pox (capripox parapoxvirus, dsDNA, env and nonenv)

respiratory

goats

bacteria

Mannheimia haemolytica (-, bipolar, fac anaer, caps)

Mycoplasma mycoides ssp mycoides large colony (-, pleiomorphic)

mycoplasma capricolum ssp capripneumoniae

mycoplasma mycoides ssp capri

respiratory

goats

virus

goat/sheep pox (capripox, parapoxvirus, dsDNA)

Caprine herpesvirus

Pestes des petitis ruminants

respiratory

dogs

bacteria

Bordatella bronchiseptica (-, obl aero, coccobacillus)

Nocardia asteroides (+, aer, filam bacilli)

Nocarida nova

Aspergillus spp.

respiratory

dogs

virus

Canine parainfluenza (paramxyo,-ssRNA, env)

Canine distemper (paramyxo)

Canine adeno 1,2 (adenovirus, dsDNA, unenv)

resp

cats

bacteria and virus

Streptococcus canis (+, cocci)

Feline viral rhinotracheitis (herpes, dsDNA,env)

Feline calicivirus (calici,+ssRNA, nonenv)

respiratory

chickens

bacteria

Avibacterium paragallinarium (-,rod, fac anae,NAD)

Escherichia coli (-,rod)

Mycobacterium avium ssp. avium (acid fast, +, aer,rod)

Mycoplasma gallisepticum (-, pleiomorphic)

Aspergillus ssp.-Brooder Pneumonia

respiratory

chickens

virus

IBV (corona, +ssRNA, env)

Newcastle disease (paramyxo, -ssRNA, env)

Avian influenza (orthomyxo, -ssRNA, env)

Infectious laryngeotracheitis (herpes, dsDNA, env)

Respiratory

turkeys

bacteria

Bordetella avium (-, obl aer, coccobacillus)

E. coli (-, rod, fac anaer)

Chlamydophila psittaci (obli intrac,-,cocci)

Mycoplasma gallisepticum, meleagridis, iowae

Aspergillus spp.

Respiratory

rabbits

respiratory

mice

Ectromelia-(parapoxvirus)

Mycoplasma pulmonis

respiratory

birds

Chlamydophila psittaci

Mycoplasma gallisepticum

respiratory

zoonotic

Pastuerella multocida

Chlamydophlia psittaci

Rhodococcus equi

Mycobacterium bovis

Urogenital

cattle

bacteria

Corynebacterium renale (+, fac anaer, diptheroid)

Leptospira serovars (-, spirochete, obl. aerobes)

Campylobacter fetus ssp veneralis (-,curved rod,microaer)

Brucella abortus (-, aer, cocbac,fac intrac)

Mycoplasma bovigenitalium

Ureaplasma diversum

Listeria monocytogenes (+,bacillus, fac anaer)

urogenital

cattle

virus

Infectious vulvovaginitis (herpes)

Infectious bovine rhinotracheitis(abortion) (herpes)

Bovine papillomatosis

Urogenital

horses

bacteria

Leptospira serovars (-, spirochete,obl aer)

Taylorella equigenitalis-Contagious Equine Metritis

(-, fac anaer, coccobacillus)

Urogenital

horses

virus

Equine herpes 1

Equine herpes 3

Equine arteritis virus

Urogenital

swine

Actinobaculum suis (+,obl anaer, diptheroid)

Leptospira serovars (-,spirochete,ob. aer)

Brucella suis (-, aer, coccbaci, fac intra)

Pseudorabies

PRRSV

Porcine Parvo (SMEDI)

urogenital

sheep

Corynebacterium renale (+, fac anaer, diptheroid)

Campylobacter fetus ssp. fetus (-, curved rod, microaer)

Brucella ovis, melitensis(-,aer, coccbac, fac intr)

Chlamydophila abortus(-, cocci, obl intra)

Listeria ivanovii (+, rod, fac anaer)

urogenital

goats

Corynebacterium renale (+, fac anaer, diptheroid)

Brucella melitensis (-aerob coccobac, fac intr)

Chlamydophila abortus(-, coci, obl inr)

Listeria ivanovii (+,rod, fac anaer)

Urogenital

dogs

NTEC(-, rod, fac anaer)

Enterococcus sp. (+, cocci)

Coag. + Staphylocci (+, cocci)

Proteus mirabilis (-, rod, fac anaer)

Klebsiella spp.(-. rod, fac anaer)

Pseudomonas aeuriginosa (-,rod)

Leptospira serovars (-, spirochete, obl.anaer)

 Brucella canis(-, coccobaci, aer)

Urogenital

zoonotic

Leptospira serovars

Brucella spp.-undulant fever

Chlamydophila abortus

Listeria monocytogenes

Neuro

cattle

bacteria

Histophilus somni(-,rod, anar)

Listeria monocytogenes(+,rod, fac anaer)

Clostridium tetani, botulinum(+,spore form, anaer, bacilli)

Neuro

cattle

virus

Rabies (Rhabo,-ssRNA,env)

Pseudorabies

Bovine Spongiform Encephalopathy (prion)

Neuro

horses

bacteria

Clostridium tetani, botulinum

Neuro

horses

virus

Equine herpes1

Rabies(rhabdo,-ssRNA,env)

Pseudorabies

EEE,WEE,VEE(toga,+ssRNA,env)

West Nile Virus (flavi,+ssRNA,env)

Borna Disease

neuro

swine

bacteria

Streptococcus suis (+,cocci)

Clostridium tetani

Listeria monocytogenes

neuro

swine

virus

rabies

pseudorabies

Porcine hemagluttinating encephalomyelitis (corona)

Enterovirus encephalomyelitis of pigs (entero picorno)

neuro

sheep and goat

bacteria

Listeria monocytogenes (+, rod)

Clostridium botulinum, tetani

Histophilus somni (-, rod)

neuro

sheep and goat

virus

Caprine arthritis encephalomyelitis (lenti)

Ovine Visna (Lenti)

Rabies

Scrapies (prion)

Louping Ill (flavi)

neuro

dogs

bacteria

clostridium tetani

Cryptococcus neoformas (yeast, basidio)

Neuro

dogs

virus

Rabies

pseudorabies

Neuro

cats

Cryptococcus neoformans

Rabies

pseudorabies

neuro

birds

Clostridium botulinum

Avian encephalomyelitis (entero picorno)-Epidemic Tremor

Neuro

zoonotic

Listeria monocytogenes

streptococcus suis

Rabies

Skin and wound

cattle

virus

Bovine papillomatosis

bovine mammilits

Bovine cowpox

Vaccinia

Pseudolumpy skin disease

Lumpy skin disease

FMDV

BVDV

Vesicular stomatitis

Bovine papular stomatits (px)

skin and wound

horses

virus

Equine papillomatosis

Sarcoid

Vesicular stomatitis

skin and wound

swine

virus

swinepox

swine vesicular disease

swine vesicular exanthema

Vesicular stomatitis

FMDV

skin and wound

sheep and goats

virus

Ovine range fever

goat pox

sheep pox

skin and wound

dog

virus

skin and wound

cat

virus

skin and wound

chickens and turkeys

virus

Systemic

cattle

virus

Rinderpest

Malignant catarrhal fever (herpes)

BVDV

Rift Valley Fever (bunya)

BIV

Jembrana

Systemic

horses

virus

African Horse Sickness (reovirus)

EIA(lentivirus)

EEE,WEE,VEE

Borna Disease

systemic

swine

virus

Pseudorabies

Hog Cholera (pesti)

African Swine Fever (asfarvirus)

PRRSV(arterivirus)

systemic

sheep and goat

virus

Sheep/goat pox

visna/Maedi

Bluetongue in sheep

Border disease

Rift Valley Fever (bunya)

Systemic

dogs

virus

Canine distemper

infectious hepatitis

canine parvovirus

systemic

cats

virus

Feline leukemia (retro)

FIV (lenti)

Panleukopenia (parvo)

FIP (corona)

ocular

cattle

Moraxella bovis (-, coccobac, aerobe)

Mycoplasma bovoculi (-, pleimorphic)

Malignant Catarrhal Fever

IBR

Ocular

Horses

Trauma:

Strep equi ssp. zooepidemicus

Strep. equisimilis

Actinobacillus equuli

Pseudomonas aeuriginosa

Aspergillus fumigatus

Systemic:

Leptospira interrogans

Virus:

African Horse Sickness

ocular

swine

African swine fever

hog cholera

ocular

sheep and goats

Chlamydophila pecorum

Mycoplasma conjunctivae

Moraxella spp.

Bluetongue (reo)

ocular

dogs

trauma:

Coagulase + staphylocci

a or B hemolytic streptocci

Staph. epidermidis

Escherichia coli

Proteus mirabilis

Aspergillus spp.

systemic:

Leptospira serovars

Brucella canis

Prototheca spp

Bastomyces dermatidis

Cryptococcus neoformans

Canine Adenovirus 1

ocular

cats

Chlamydophila felis

Mycoplasma felis

Mycoplasma gatae

Feline viral rhinotracheitis

feline calicivirus

FIP

ocular

birds

ocular

zoonotic