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Dev Bio Organogenesis
Terms for Organogenesis Exam
174
Biology
Undergraduate 4
04/08/2014

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Term

ommatidia

Definition
Term
Small eye mutation 
Definition

- heterozygotes for a loss of function mutation in Pax-6

Term

paired box

Definition
another name for pax 6 gene
Term
optic vesicle 
Definition

buldges from the diencephalon of the prosencephalon that extend to the head ectoderm which becomes the lens placode

Term
eyeless gene 
Definition
drosophila homologous gene to Pax-6 gene in humans
Term
neural retina 
Definition
glial cells, ganglion ells, interneurons, and light sensitive photoreceptore neurons originating from the inner layer of the optic cup
Term
lens placode 
Definition

neural tube and epidermal thickening that forms the transparent lens to allow light on retina; does not form neurons

Term
pigmented retina 
Definition

originated from the outer layer of the optic cup, produces melanin

Term
microRNA 
Definition
small RNA produced in the developing neural retina which inhibits translation of specific mRNA by binding to them.  These microRNA's contribute to the development of the multiple layers of the neural retina.
Term
competence 
Definition

the ability of a cell to respond to extrinsic factors.  In this example the ability of the epidermal cells to respond to the cells of the eye field.

Term
induction
Definition

the process by which eye field initiates the formation of the lens in the epidermis, and then the lens initiates the form formation of the retina from the eye field.

Term
reciprocal inductions
Definition

the process by which eye field initiates the formation of the lens in the epidermis, and then the lens initiates the form formation of the retina from the eye field.

Term
optic cup - 
Definition

the two layered invagination of the combined optic vesicle and lens placode 

Term
master control gene 
Definition
 a gene which single handedly triggers the formation of an organ or structure
Term
prosencephalon
Definition

- anterior most portion of neural tube which develops into the forebrain

Term
mesencephalon
Definition

2nd portion of anterior NT which forms into the midbrain responsible for motivation, movement and depression

Term
rhombencephalon
Definition

3rd portion of anterior NT which forms into the hindbrain; the cerebrum and the medulla oblongata (involuntary activities: breathing)

Term
telencephalon
Definition

- anterior portion of prosencephalon which becomes cerebral hemispheres

Term
diencephalon
Definition

- posterior portion of prosencephalon which becomes optic vesicles

Term
myelencephalon
Definition

secondary vesicle stemming from the rhombencephalon which develops into the medulla oblongata

Term
metencephalon
Definition

secondary vesicle derived from the anterior rhombencephalon which develops into the cerebellum and pons

Term
cerebellum
Definition

mid portion of brain responsible for fine tuning movement and language.

Term
cerebrum
Definition

- superior most portion of brain responsible for all voluntary actions, learning, memory, smell, and language

Term
neuroblast
Definition

precursor of neuron, come from neural stem cells, detach from NT after cell division

Term
Sonic hedgehog (Shh) protein 
Definition

paracrine factor responsible for formation of ventral morphology of the developing NT, derived from floor plate and notochord, help create D/V axis of NT

Term
BMP4 and BMP7 proteins 
Definition

transcription factors found in the epidermis which initiate roof plate formation and D/V axis of NT.

Term
floor plate 
Definition

- derived from the medial hinge point cells on the ventral surface of the NT; secrete shh

Term
roof plate 
Definition

initiated by the presence of BMP4 and 7 from the epidermis cells dorsal to the NT, the dorsal NT cells become the roof plate and express TGF-B.

Term
TGF-b superfamily 
Definition
family of transcription factors originating from the ectoderm which help derive the dorsal characteristics of the developing NT
Term
germinal neuroepithelium 
Definition

a layer of rapidly dividing neural stem cells one layer thick with nuclei at varying distances from the NT lumen based upon their stage of mitotic division.

Term
neuron’s birthday 
Definition

-  the point at which a neuroblast divides from the neura-epithelial stem cell, it contains higher amounts Notch receptors than the remaining stem cell and will not divide again.  Stem cell retains a greater portion of Par-3.

Term
mantle 
Definition

cortical mantle or intermediate zone, a layer of cells which form around the ventricular zone containing cells which differentiate into neurons and glial cells (grey matter)

Term
ventricular zone 
Definition

portion of the NT which is in contact with the lumen and cerebrospinal fluid where asymmetrical division occurs

Term
marginal zone 
Definition

zone filled with axons of mantle cells (white matter) covered in glial cells

Term
external granule layer 
Definition

- in cerebellum, germinal cell layer outside the marginal zone at boundary of NT where neuroblasts reside 

Term
internal granule layer 
Definition

zone within the mantle formed by neuroblasts which have migrated back towards the ventricular zone after being exposed to BMPs in the external granule layer and becoming granule cells.

Term
Purkinje neurons 
Definition

produced by ventricular zone, they are the major cell type of the cerebellum.  secrete shh sustaining granule cell division; huge # of dendrites and connection to ventricular zone.  only output neurons of cerebellar cortex

Term
dendritic arbor 
Definition

elaborate points of connection found on purkinje neurons just above bulblike cell body: like a tree

Term
neocortex 
Definition

neuroblasts from mantle migrate on glial processes through white matter to form grey matter layer on surface of the brain

Term
alar region 
Definition

dorsal region of spinal cord which receives sensory input

Term
basal region - 
Definition
ventral region of spinal cord which transmits info to the body
Term
sensory neurons 
Definition

neurons which transmit info TO the CNS   Alar region

Term
motor neurons 
Definition

- neurons which transmit info FROM the CNS

 

 

Term
neurogenic genes 
Definition

Notch/Delta: determine a neuronal fate

Term
proneural genes 
Definition

achaete/scute: bHLH transcription factors, targets of notch

Term
Notch protein 
Definition

transmembrane protein which receives signal from notch, which in turn downregulates its own delta production and stops cell from being proneural

Term
Delta protein 
Definition

transmembrane signalling protein that acts as ligand to Notch

Term
juxtacrine signaling 
Definition
a transmembrane ligand signals a transmembrane receptor
Term
equivalence group 
Definition

a group of cells which are equally competent to be induced into differentiating into specific cells 

Term
lateral inhibition 
Definition

equivalent neighboring cells which signal one another causing downregulation of signaling from some cells thus creating cell differentiation.

Term
reeler mouse mutant 
Definition

- mutation causing lack of extracellular matrix protein Reelin which is required to allow neuroblasts to bind with glial cells resulting in 

Term
Reelin protein 
Definition

- extracellular matrix protein required for binding of neuroblasts to glial cells, highly expressed during cell migration to cortex, loss of fxn results in disorganized cortex

Term
dendrites 
Definition

- the fine branching extensions of the neuron that pick up impulses from other cells

Term
oligodendrocyte 
Definition

- glial cell which wraps around developing axons and insulates the cells and increases cell longevity

Term
myelin sheath 
Definition

specialized cell membrane of the oligodendrocyte (in CNS) and Schwann Cell (in PNS) which insulates the axons at intervals

Term
glial guidance 
Definition
- a mechanism for positioning neurons within the developing brain.
Term
keratinocyte stem cells - 
Definition

- stem cells at the base of the epidermis which produce daughter cells which migrate exteriorly.  After differentiating they become keratinocytes which are bound tightly together, have ceased metabolic and transcription.

Term
keratin
Definition

- rope like protein in alpha helices; major component of skin, hair and nails.

Term
melanocytes
Definition

- the major pigment producing cells of skin and hair; originates in neural crest, migrates to epidermis, hair follicles, eye and ear.

Term
melanin 
Definition

pigment compound made by melanocytes, can be black, brown, blonde or red.

Term
basal layer (epidermis) 
Definition

- bottom most layer of epidermis; mitotically active; contains keratinocyte stem cells and melanocytes

Term
spinous layer (epidermis)
Definition

layer of mitotically active keratinocytes just above the basal layer

Term
Malpighian layer (epidermis
Definition
- the actively mitotic layer of the epidermis comprised of the basal and spinous layer
Term
granular layer (epidermis) - 
Definition

2nd most exterior layer of epidermis comprised of non dividing, not fully flattened keratinocytes

Term
cornified layer (epidermis) 
Definition

most external layer of epidermis comprised of flattened, keratin filled, non dividing keratinocytes

Term
epidermis*- 
Definition

external body layer comprised of 4 layers originating from the ectoderm

Term
dermis* 
Definition

- layer of mesenchyme tissue just deep to the epidermis

Term
autocrine growth factor - 
Definition

self signalling ligands which create powerful self induction cycles

Term
Psoriasis
Definition

- excessive exfoliation of epidermal cells

Term
keratinocyte growth factor  
Definition
transcription factor which induces keratinocyte production and hair shaft formation
Term
hair shaft
Definition

portion of hair visible above skin

Term
epidermal placode
Definition

proliferation of epidermal cells induced by signaling

Term
dermal papilla
Definition

mesenchyme cells induced into aggregation at the formation of the epidermal placode

Term
primitive hair shaft
Definition
the early stage of hair shaft development in which the inner root sheath is just forming and dermal papilla has not yet been engulfed
Term

medulla, cortex, cuticle (hair)

Definition
inner, outer, skin of hair
Term
sebaceous glands
Definition

- oil producing glands derived from the epidermis which migrate into the outer root sheath

Term
sebum 
Definition

oil produced by the sebaceous glands which lubricates hair shaft and skin

Term
lanugo hair 
Definition

thin, closely spaced hair of human embryo that is typically shed before birth

Term
vellus hair 
Definition

short silky hair produced before adolescence and sometimes after follicles revert; may remain on "hairless" parts of body (ie eyelids and forehead)

Term
terminal hair 
Definition
long, thick hair which replaces vellus hair at adolescence
Term
anagen 
Definition

cycle of growth 

Term
catagen
Definition
cycle of regression
Term
telogen 
Definition
cycle of rest
Term
X-linked anhidrotic ectodermal dysplasia 
Definition
possibly a mutation in ectodysplasin, baldness disorder
Term
Ectodysplasin 
Definition

a signaling pathway which, along with Wnt, is crucial for placode formation but also enhances the placode inhibitor Dkk

Term
hirsutism 
Definition

excessive facial hair in women

Term
hypertrichosis
Definition

excessive hair for age, sex, or ethnicity

Term
eumelanins 
Definition

monomer of melonin which produces black and brown color

Term
pheomelanins 
Definition

monomer of melonin which produces red color

Term
Tyrosine
Definition
precursor molecule of melanin monomers
Term
tyrosinase
Definition
enzyme which converts tyrosine to melanin monomer
Term
cranial (cephalic) neural crest 
Definition

NC cells which differentiate into cranial nerves, cartilidge, connective tissue, teeth, ears, jaw, pharyngeal arches

Term
cardiac neural crest 
Definition
become septum of heart and connective tissue of arteries
Term
trunk neural crest 
Definition

dorsal root ganglia (sensory neuron ganglia), autonomous nervous system, adrenal medulla, melanocytes

Term
ephrin
Definition

proteins within the posterior portion of the sclerotome which inhibit the migration of ventrally moving NC cells causing them to move through the anterior portion of the sclerotome, and promotes the migration of dorsally migrating melanocytes.

Term
Eph receptor 
Definition
the ephrin receptor on a NC which repels the NC from ephrin (the posterior of the sclerotome)
Term
intramembranous ossification 
Definition

bone formation directly from mesenchyme; no cartilidge intermediate state

Term
osteoblasts
Definition

committed bone precursor cell

Term
osteoid matrix 
Definition

- a collagen proteoglycan secreted by the osteoblasts capable of binding CA

Term
osteocytes
Definition

osteoblasts embedded in the osteoid matrix

Term
periosteum
Definition

membrane of cells surrounding bone, inner surface become osteoblasts and lay down layers of bone

Term
Piebaldism
Definition

disorder which fails to produce pigments in some regions in the body

Term
White spotting 
Definition

phenotype due to incomplete migration and differentiatioin of nc cells contributing to melanocytes.

Term
metalloproteinase 
Definition
important catalyst involved in myogenesis, promoting muscle cell fusion
Term
somitogenesis 
Definition

process of somite formation: fissure formation (separation of somites), periodicity, epithelialization, specification, differentiation

Term
chordamesoderm 
Definition

central region of trunk mesoderm, form notochord and transient organs

Term
paraxial mesoderm 
Definition

somatic mesoderm flanking the notochord on both sides, form somites, to make muscle, vertebrae, ribs, and connective tissue,  anterior most region becomes head mesoderm

Term
intermediate mesoderm 
Definition

lateral to paraxial mesoderm, forms urogential system, including kidneys and gonads as well as adrenal gland

Term
lateral plate mesoderm - 
Definition

furthest from notochord, forms heart, blood vessels, blood cells and circulatory system, lining of body cavities, pelvic and limb skeleton (not muscles)

Term

prechordal plate mesoderm - 

Definition
Term
somitomere 
Definition

- whorls of cells, originally mesenchyme which have migrated through the primitive streak and become the precursors of somites

Term
somite 
Definition

sectioned off piece of paraxial mesoderm

Term
Notch gene 
Definition

gene expressed which correlates with the formation of the boundary between somites.

Term
hairy1 gene 
Definition

- gene activated by notch activity which plays a role in fissure creation and somite separation

Term
ephrin and Eph receptor 
Definition

proteins induced by Mesp products which repel one another and establish separation of somite from presomatic mesoderm

Term
sclerotome
Definition

ventral/lateral compartment of individual somite which forms vertebrae and rib cartilage

Term
dermamyotome 
Definition
epithelial compartment of individual somite which contains skeletal muscle progenitor cells of limbs and cells which become dermis of the back; develop into the dermatome and mytome compartments of the somite
Term
myotome - 
Definition

dorsomedial and ventrolateral compartments of individual somite which forms musculature of the back, rib cage and ventral body wall

Term
myoblast
Definition

muscle precursor cells which develop at the most lateral and proximal edges of the myotome, forming a second layer of cells which develop into the abaxial muscles and primaxial muscles respectively

Term
dermatome
Definition

central portion of the dermamyotome which becomes the dermis of the back

Term

fibronectin

Definition
cell adhesion molecule which plays a role in somitogenesis
Term
N-cadherin - 
Definition
proteins involved in cell to cell adhesion, specifically seen in the separation of D/V cell division of the dermatome, where the dorsal daughter cells become back dermis and ventral daughter cells join myotome
Term
myogenic regulatory factors (MRFs) - 
Definition
transcription factors induced by NT paracrine factors which determine myotome cell fates and enhance production of FGF's for proliferation
Term
fibroblast growth factor - 
Definition
 paracrines which induce determined myotome cell proliferation
Term
intramembraneous ossification 
Definition
 formation of osteoblasts directly from cranial neural crest cells, which secrete osteomatrix which binds to CA, periosteum then forms on surface of bone
Term

myogenesis

 

Definition
myotome determination (Wnt, Shh, MyoD, Myf5); myotomes proliferate (FGFs); myotomes align (fibronectin/integrin, myogenin); cells fuse into myotubes (meltrin); maturation
Term

myotubes

Definition
multinucleated myotome cells induced by meltrin
Term
myogenic bHLH proteins 
Definition
MyoD, Myf5, MRF5, Myogenin (all transcription factors) which activate muscle specific genes and can induce muscle cell fate
Term
endochondral ossification 
Definition

mesenchyme cells turn to cartilage which turns into bone, sclerotome contributes

Term
RUNX2 
Definition

factor which induces mesenchyme NC cells to become osteoblast and chondrocyte cells to become hypertrophic


Term
hypertrophic chondrocytes - 
Definition
cartilidge cells in center of long bones which increase in cell size due to BMPs and runx2, secrete Vegf (vascular epithelial growth factor) and stimulate apoptosis
Term
osteogenesis
Definition
- bone formation through intramembranous ossification or endochondral ossification
Term
osteoblast 
Definition
arrive in long bones through blood and bind cartilaginous matrix and deposit bone matrix
Term
chondroclast 
Definition
arrive in long bones via blood and eat up debris from apoptosis
Term
immunoglobulin-like repeat 
Definition
on FGF receptors, three regions of the extracellular domain that can bind FGFs
Term
tyrosine-kinase domain 
Definition
intercellular domain of FGF receptors which dimerizes when FGF bound and mutually phosphorylate
Term
receptor tyrosine kinase - 
Definition

RTKs, domains of receptors which phosphorylate one another once dimerized

Term

ligand binds - dimerize - mutual phosphorylation - grb2 - sos - ras - raf - mek - map - tf activated

 

ligand binds - dimerize - mutual phosphorylation - plc - ip3 - mobilize CA from ER

Definition
FGF signalling pathway
Term
epiphyseal growth plates 
Definition
regions near ends of long bones where chondrocyte proliferation is occuring controlled by FGFRs
Term
synostosis 
Definition
premature fusion of the cranial sutures due to mutation in fgfr1 and fgfr2
Term
Achondroplasia
Definition
mutation in FGFR3 which limits bone growth, mutation is always on so causes dwarfism
Term
osteoporosis
Definition
disease where bone becomes more porous and brittle
Term
osteopenia
Definition
weakened bones, precursor to osteoporosis
Term
cleidocranial dysplasia
Definition
bone disease affecting the skeletal and dental system, RUNX2 heterozygotes
Term
stylopod 
Definition
part of limb most proximal
Term
zeugopod
Definition
middle part of limb
Term
autopod 
Definition
part of limb containing metacarpals and digits most distal
Term
limb field 
Definition
all cells that have the potential to generate limb
Term
apical ectodermal ridge (AER) 
Definition
a thickening of ectoderm at the tip of the developing limb bud required for bud outgrowth, major active factor is FGF8 which stimulate mitosis
Term
limb mesenchyme - 
Definition
contributions from both paraxial (somitic) and lateral mesenchyme
Term
regulative development 
Definition

-  cell-cell communication allowing cells to sense their environment and adjust cell fates accordingly to make complete structure

Term
positive feedback loop 
Definition

circular induction which propagates further induction (eg. FGF8 stimulates FGF10 which stimulates FGF8)

Term
zone of polarizing activity (ZPA
Definition

patterns the A/P limb axis, small cluster at dorsal-posterior of limb bud where SHH is produced

Term
FGF10 - fibroblast growth factor 
Definition
gene which initiates limb bud formation by specifying cell fate

Term
SHH 
Definition
- produces in ZPA to influence BMP gradient involved in A/P bud axis formation

Term
BMP
Definition
- involved in digit specification, higher concentration make more posterior digits
Term
TBX5 - 
Definition
- Tbox gene that specifies forelimb fate
Term
TBX4 - 
Definition
Tbox gene that specifies hindlimb fate
Term
Polydactyly
Definition
SHH disorder causing over expression and extra digits from over blockage of Gli3
Term
apoptosis 
Definition
programmed cell death brought about by bmp or prevented by gremlin (bmp inhibitor)
Term

interdigital necrotic zone

Definition
region between digits where apoptosis is intiated, sculpting the limb
Term
syndactyly 
Definition
fused digits
Term
synpolydactyly
Definition
Hoxd13 mutation causing fused fingers
Term
hemimelic-extra toes 
Definition

Hx mutation, over  expression of SHH resulting in excess blocking of Gli3 and thus extra digits, all posterialized. 

Term
wound epidermis 
Definition

- initial layer of epidermis which covers wound

Term
apical epidermal cap 
Definition

- wound epidermis transforms into aec 

Term
dedifferentiation 
Definition

- reverting differentiated cells to undifferentiated cells

Term
blastema
Definition

fibroblast cells which become the progenitor cells for new limb formation

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