| Term 
 
        | REVIEW What cells are involved in the innate immune response?
 |  | Definition 
 
        | Mcrophages Neutrophils
 DC
 NK cells
 |  | 
        |  | 
        
        | Term 
 
        | REVIEW What is the role of complement?
 |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | REVIEW What cytokines (and functions) are involved in the innate response?
 |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | REVIEW What are the effector mechanisms against a) extracellular and b) intracellular pathogens?
 |  | Definition 
 
        | a) complement b) dendritic then later NK cells
 |  | 
        |  | 
        
        | Term 
 
        | Difference between innate and adaptive immune response? |  | Definition 
 
        | Adaptive is driven by antigen-specific receptors |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | Describes the properties of antibodies and TCR that interact selectively with only one type or a few types of antigens (epitopes). |  | 
        |  | 
        
        | Term 
 
        | Why are B cells flexible? |  | Definition 
 
        | Hinges on a disulfide bond |  | 
        |  | 
        
        | Term 
 
        | B cell start off as ___ ____ proteins. T cells, however, remain on the ____. |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | Antibody structure consists of 4 proteins which are: |  | Definition 
 
        | Pair of identical 2 heavy chains 2 light chains
 |  | 
        |  | 
        
        | Term 
 
        | T cell receptor structure are made up of: |  | Definition 
 
        | same size: alpha and beta |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | Protein on the antigen that binds to antigen binding site |  | 
        |  | 
        
        | Term 
 | Definition 
 | 
        |  | 
        
        | Term 
 | Definition 
 
        | ONE THING (ONLY peptides that are tightly associated w/ other molecules aka - ACCESSORY MOLECULES) |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | Major Histocompatibility Complex MHC) Human Leukocyte Antigen (HLA)
 |  | 
        |  | 
        
        | Term 
 
        | Two different types of T cells that are needed to eliminate pathogens: |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | Pathogens that live INSIDE cells get represented by: |  | Definition 
 | 
        |  | 
        
        | Term 
 | Definition 
 | 
        |  | 
        
        | Term 
 
        | Pathogens that live OUTSIDE the cell get represented by: |  | Definition 
 | 
        |  | 
        
        | Term 
 | Definition 
 | 
        |  | 
        
        | Term 
 
        | CD8 binding to HLA class I induces what to the cell? |  | Definition 
 
        | APOPTOSIS - gets rid of virus |  | 
        |  | 
        
        | Term 
 
        | Does apoptosis occur in the cell when CD4 binds to HLA class II? |  | Definition 
 
        | NO- need to alert the rest of the body |  | 
        |  | 
        
        | Term 
 
        | A B cell receptor looks like which Class protein? |  | Definition 
 
        | (Mnemonic::: B1T2) class I (bc has heavy and light chains) |  | 
        |  | 
        
        | Term 
 
        | A T cell receptor looks like which Class protein? |  | Definition 
 
        | (Mnemonic::: B1T2) CLASS II because has 2 similar size chains (alpha and beta) |  | 
        |  | 
        
        | Term 
 
        | Extracellular and Intracellular Pathogens must be treated differently in the cell: Where do extracellular pathogens end up in the cell?
 |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | Extracellular and Intracellular Pathogens must be treated differently in the cell: Where do intracellular pathogens end up in the cell?
 |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | Where do HLA class I and II get synthesize inside the cell? |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | What does TAP do in the ER? |  | Definition 
 
        | Membrane bound protein that transports peptide fragments from cytosol into ER |  | 
        |  | 
        
        | Term 
 
        | What is the purpose of changing the proteosome subunits and increasing the production of HLA class I? |  | Definition 
 
        | Make virally infected cells better targets for CD8 T cell killing |  | 
        |  | 
        
        | Term 
 
        | How to maximize peptide presentation? |  | Definition 
 
        | MHC molecules are polygenic. MHC molecules are polymorphic.  NOTE: for T cell, it's gene rearrangement |  | 
        |  | 
        
        | Term 
 
        | The ability of HLA molecules to present repertoire of peptides: |  | Definition 
 
        | polygeneism Anchor residues
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | The AA (of the antigen peptide) that the HLA molecule attach to |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) NECESSARY for B cell activation 2) Growth factor for Th2 T Cells 3) Isotype switching - IgG and IgE 4) Prevents diff. of naive CD4 T cells into Th1 T cells 5) With IL-10 and IL- 13 down regulates NK cell activity 6) With IL-10 and IL-13 down regulations CD8 T cell activity |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1)Necessary for B cell activation  2)Absolutely necessary to activate eosinophils that defend against parasites 3)Isotype switching to IgE |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1)Necessary for B cell activation  2) Increases antibody production in activated B cells |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) With TGFbeta, causes isotype switching to IgA in humans 2)Suppresses macrophage respiratory burst and cytokine secretion 3) Suppresses development of new Th1 T cells. |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1)Growth factor for B cells 2) With IL-4 down regulations NK cell activity 3) With IL-4 down regulates CD8 T cell activity. |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Inhibits growth of B cells 2) With IL-10 isotypes switches to IgA 3)Inhibits macrophage activation 4)Activates neutrophils. |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | Drives B cell proliferation. Causes B cell differentiation.
 Causes isotype switching.
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Induces respiratory burst enzymes to generate activated destructive macrophages (w/ CD40L). 2) Increases activated CD8 T cell activity.
 3) Increases activated NK cell activity.
 4) Causes B cells to switch to IgG the isotype.
 5) Causes epithelium and other cell types to up-regulate MHC molecule expression.
 6) Changes proteosomes subunits to increase peptide production for MHC class I molecules.
 7) Prevents naive CD4 T cell differentiation into TH2 T cells.
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) T cell growth factor 2) Can induce apoptosis in armed effector T cells |  | 
        |  | 
        
        | Term 
 
        | TNF alpha - causes macrophages to secrete what? |  | Definition 
 
        | Causes activated macrophages to secrete nitrous oxide (an enzyme that can destroy tissue) |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | LT is LYMPHOTOXIN 1) Inhibits B cells
 2) Kills T cells
 3) Activates macrophages and induces activated macrophages to secrete NO
 4) Activates neutrophils.
 5) Kills tumor cells
 
 AKA TNF BETA
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | Induces apoptosis in FAS bearing cells |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Activates macrophages ( w/ IFN gamma) 2) Induces cytokine production in activated macrophages.
 3)Induces respiratory burst enzymes in activated macrophages.
 4) Causes cytokine production by dendritic cells.
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1. Activates vascular endothelium. 2. Helps to activate naive T lymphocytes.
 3. Causes local tissue destruction.
 4. Increases access of effector cells.
 5. Acts systemically to produce fever.
 6. Up regulates IL-6 production.
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Activates vascular endothelium 2) Shuts down venous return to increase fluid drainage to lymph nodes 3) Acts systemically to produce fever 4) Mobilizes metabolites 5) Can cause shock |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Upregulates antibody production 2) Increases lymphocyte production
 3) Assists in B cell activation
 4) Acts systemically to produce fever
 5)Causes production of acute phase protein
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Steers other immune cells to the site of antigenic challenge. 2) With TNF alpha, activates neutrophils.
 |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 1) Activates NK cells 2) Causes differentiation to Th1 T cells
 |  | 
        |  | 
        
        | Term 
 
        | Cytokines released by macrophages |  | Definition 
 
        | IL-1 TNF-α
 CXCL8
 IL-12
 IL-6
 |  | 
        |  | 
        
        | Term 
 
        | Cytokines released by macrophage and TH2 |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | Cytokines released from TH2 T cell |  | Definition 
 
        | IL-4 IL-5
 IL-10
 IL-13
 TGFβ
 CD40L
 |  | 
        |  | 
        
        | Term 
 
        | Cytokines released by TH1 and TH2 |  | Definition 
 | 
        |  | 
        
        | Term 
 
        | Cytokines released by TH1 T cell |  | Definition 
 
        | IFNγ IL-2
 TNGβ
 Lymphotoxin)
 FASL
 CD40L
 |  | 
        |  | 
        
        | Term 
 | Definition 
 | 
        |  | 
        
        | Term 
 | Definition 
 
        | Heavy blood in stools, usually in the upper or proximal portion of the tract |  | 
        |  | 
        
        | Term 
 
        | The stratified squamous mucosa of the esophagus may be damaged by a variety of irritants including |  | Definition 
 
        | alcohol, corrosive acids or alkalis, excessively hot fluids, and heavy smoking |  | 
        |  | 
        
        | Term 
 
        | Esophagitis due to chemical injury is associated with |  | Definition 
 
        | dysphagia (pain with swallowing) |  | 
        |  | 
        
        | Term 
 
        | Esophagitis - what may occur in severe cases? |  | Definition 
 
        | Hemorrhage, stricture, or perforation may occur in severe cases |  | 
        |  | 
        
        | Term 
 
        | Iatrogenic injury to the esophagus may be caused by |  | Definition 
 
        | 
 
cytotoxic chemotherapyradiation therapygraft-versus-host disease (GVHD) |  | 
        |  | 
        
        | Term 
 
        | Infections may occur in otherwise healthy individuals but are most frequent in |  | Definition 
 
        | 
 
HSVCMVfungal infections (Candida) |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Reflux of gastric contents into the lower esophagusCauses: EsophagitisFound in:
adults over 40 infants and children   |  | 
        |  | 
        
        | Term 
 
        | Conditions that decrease lower esophageal sphincter (LES) tone, or increase abdominal pressure contribute to GERD and include |  | Definition 
 
        | 
 
sliding hiatal herniaalcoholcigarette smokingobesityCNS depressantspregnancydelayed gastic emptyingincreased gastric volume |  | 
        |  | 
        
        | Term 
 
        | W/ GERD, the mucosa can develop |  | Definition 
 
        | 
 
leukoplakiaulcers fibrosisesophageal stricture which lead to dysphagia. |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Due to: 
Change of squamous cell to intestinal goblet cells in lower third of esophagusPredisposes to:
Common in:
 white males between 40 and 60   |  | 
        |  | 
        
        | Term 
 
        | COMPLICATIONS of ESOPHAGITIS |  | Definition 
 
        | •	Ulcerations •	Fibrosis •	Strictures •	Dysphagia  •	Leukoplakia  •	Metaplasia  •	Malignancy |  | 
        |  | 
        
        | Term 
 | Definition 
 
        |   
transient mucosal inflammatory processcan be be asymptomatic can cause variable degrees of  
epigastric painnauseavomiting   |  | 
        |  | 
        
        | Term 
 
        | Acute gastritis is caused by |  | Definition 
 
        |   
aspirinNSAIDsalcoholcigarettesHelicobactter (H. pylori) infection   |  | 
        |  | 
        
        | Term 
 
        | Surface epithelium in Acute gastritis |  | Definition 
 
        | Intact with scattered PMNs. |  | 
        |  | 
        
        | Term 
 
        | What signifies active inflammation in acute gastritis? |  | Definition 
 
        |   
presence of neutrophils in acute gastritis above the basement membrane in direct contact with epithelial cells is abnormal in all parts of the GI tract and signifies active inflammation. With more severe mucosal damage, erosions and hemorrhage develop.   |  | 
        |  | 
        
        | Term 
 
        | What does erosion denote in acute gastritis? What may occur due to this? |  | Definition 
 
        |   
loss of the superficial epithelium, generating a defect in the mucosa that is limited to the lamina propria, a thin layer of vascular connective tissue beneath the epitheliumHemorrhage may occur and cause dark punctae or spots like coffee grains.   |  | 
        |  | 
        
        | Term 
 
        | Complications of Gastric Ulcers |  | Definition 
 
        | Bleeding   
Most frequent complication ; May be life-threatening; May be the first indication of an ulcer  Perforation  
Accounts for two thirds of ulcer deaths ; Is rarely first indication of an ulcer  Obstruction  
Mostly in chronic ulcers ; Secondary to edema or scarring; associated with pyloric channel ulcers ;May occur with duodenal ulcers Causes incapacitating, crampy abdominal pain; rarely cause total obstruction and intractable vomiting   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Cause: H.pylori inf or Autoimmune gastritis
Clinical of H. pylori
less severe but more persistent than acuteNausea upper abdominal discomfortsometimes with vomitinghematemesis is uncommonAtrophic gastritis 
 
Due to autoimmune gastritis, with a loss of parietal cell mass.Clinical:
Leads to pernicious anemia   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
H. pylori organisms are present
duodenal ulcers *mostgastric ulcers chronic gastritis (antrum- 90% of cases)Complications of H. Pyloris Gastritis:
Peptic Ulcer disease (also seen in chronic)increases the risk of gastric cancerIn US
associated with poverty, household crowding, limited education, African-American or Mexican-American ethnicity, residence in rural areas, and birth outside of the United States   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
characterized by 
(1) antibodies to parietal cells + loss of intrinsic factor +  achlorhydria (2) vitamin B 12 def - pernicious anemia. May cause atrophic glossitis and peripheral neuropathyPernicious anemia and autoimmune gastritis are associated with other autoimmune diseases:  
 Hashimoto thyroiditisinsulin-dependent (type 1) diabetes mellitusAddison diseaseGraves diseasevitiligomyasthenia gravisSpares the antrum + hypergastrinemia |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
associated with H. pylori-induced chronic gastritis + NSAIDs useLocation: 
Anywhere but most common in duo than gastric antrum Path-phys- 
The imbalances of mucosal defenses and damaging forces that cause chronic gastritis develops on a background of chronic gastritiscigarette smoking (impairs blood flow to the gastric mucosa) high dose corticosteroid therapy (suppresses prostaglandin synthesis and impairs healing)Clinical 
perforation, hemorrhage, and pyloric stricture (due to fibrosis)epigastric pain, or aching painiron deficiency anemia may result   |  | 
        |  | 
        
        | Term 
 
        | Intestine - Viral Gastroenteritis include: |  | Definition 
 | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Causes: nonbacterial infectious gastroenteritisGet it by:
Contaminated food or water, schools, hospitals, nursing wards, and cruise ships. Clinical
Nausea, vomiting, watery diarrhea, and abdominal pain.   |  | 
        |  | 
        
        | Term 
 
        | Crohn disease (regional enteritis) |  | Definition 
 
        | 
Transmural inflammation on any part of GIdue to-not clear: bacterial, dietary factors, stressClinical 
early lesion- aphthous ulcertransmural inflammation - leatheryedemanodular lymphoid aggregatesnon-caseating granulomas in submucosa“skip lesions” - cobblestone appearanceabdominal pain, diarrhea, fever, malabsorption if in small intestine, bleeding intestinal obstruction, fistulaecreeping fat - mesenteric fat extends around the serosal surface complication  
stricture due to fibrosis and obstruction inc risk to intestinal cancer   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Inflammation limited to the mucosa of colon and the superficial submucosaDue to: genetic factorsClinical 
Crypt abscessesbleeding, cramps, blood diarrheamoderate anemia with moderate colitisdehydration, electrolyte depletion, massive hemorrhagesIncreased risk for:   |  | 
        |  | 
        
        | Term 
 
        | Vascular diseases - Infarction. The causes: |  | Definition 
 
        | 
 
Embolism or thrombosis hernia intussusceptionvolvulus |  | 
        |  | 
        
        | Term 
 
        | Vascular diseases - Hemorrhoids |  | Definition 
 
        |   
Marked dilation or varicosity of hemorrhoidal venous plexusvery commonless common cause is obstruction of portal circulation in liver cirrhosis.   |  | 
        |  | 
        
        | Term 
 
        | Neoplasms of the Esophagus |  | Definition 
 
        | 
Squamous cell carcinomain the USA - low incidence, more in males, Caspian sea area, Iran, Central Asia, Mongolia No. China-esophageal cancer belt with incidence 30-70 x greaterdistribution suggests environmental factors Clinical 
alcohol, cigarette smoking, nitrosamines, Plummer Vinson syndrome, chronic esophagitis, achalasia, esophageal stricturedysphagia, cachexia, anorexia, poor survival   |  | 
        |  | 
        
        | Term 
 
        | Adenocarcinoma of the Stomach |  | Definition 
 
        | 
In Japan, Chile, Costa Rica, and Eastern Europe the incidence = 20x higher. US rates dropped.Dietary and environmental factors: 
N-nitroso compounds used w/ smocked meats or fish, pickled vegetablesRisk inc w/: 
H. pylori infection in chronic gastritisBarrett esophagus and may reflect the increased incidence of GERD and obesityindividuals with multifocal mucosal atrophy and intestinal metaplasiaClinical 
early symptoms include: dyspepsia, dysphagia, and nausea. Loss of E-cadherin |  | 
        |  | 
        
        | Term 
 
        | Adenocarcinoma Stomach- the neoplastic cells: |  | Definition 
 
        | 
signet-ring cell morphology 
contain vacuoles mucin that expand the cytoplasm and push the nucleus to the peripherydesmoplastic reaction  
fibrous CT that stiffens the gastric walllinitis plastica 
Leather bottle appearance due to diffuse rugal thick. + rigid thick wall (from large areas of infiltration) most powerful prognostic indicators for gastric cancer 
depth of invasion + extent of nodal and distant metastasis Local invasion:
 duodenum, pancreas, and retroperitoneum Five year survival- adv gastric cancer <20 %.   |  | 
        |  | 
        
        | Term 
 
        | Polyps (in general) in the intestines |  | Definition 
 
        | 
Lesions pedunculated or flat base (sessile)Found: 
colon* mostcan be seen in esophagus, stomach, SINeoplastic polyp
adenoma (can progress into cancer)Non-neoplastic polyps 
inflammatoryhamartomatoushyperplastic   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
 
benign tumor-like nodule It is an overgrowth of mature cells + tissues normally present in the affected part, but with disorganization and with one element predomoccur 
sporadically genetically determinedacquired syndromes   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
focal malformations of the mucosal epithelium + lamina propriaClinical
sporadic or in clinical syndromesTypically pedunculatedMost in the rectumMost with rectal bleedingDysplasia occurs in a small proportion of juvenile polyps  Autosomal dominant juvenile polyposis syndrome = increased risk of colon adenocarcinoma.
   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Auto dominant syndrome  multiple GI hamar polyps + mucocutaneous pigmentationWho: 
Clinical
SI and pedunculatedBrown macules around the mouth, eyes, nostrils, buccal mucosa, palmar surfaces of the hands, genitalia, and perianal region. Complictions:
increased risk of wide variety of cancers The GI adenocarcinomas arise independently of the hamartomatous polyps   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
Epithelial proliferations that represent a "piling up" of goblet cells and absorptive cellsfound in:
 Lesions = without malignant potential   |  | 
        |  | 
        
        | Term 
 | Definition 
 
        | 
 
Most clinically important neoplastic polyps:
colonic adenomas, benign polyps that are precursors to colorectal adenocarcinomas.   |  | 
        |  | 
        
        | Term 
 
        | Neoplastic polyps = Adenomas |  | Definition 
 
        | 
intra-epithelial neoplasms Range: small, pedun polyps to large, sessile Found in: 
50% of Western world by age 50 no gender preferenceThree types
presence of epithelial dysplasia. the majority of adenomas do not progress to become adenocarcinomaMost adenomas are clinically silent, with the exception of large polyps that produce occult (hidden) bleeding and anemia. A positive guaiac test detects occult blood in the stool50% of all polyps are found in the rectosigmoid region50% are evenly distributed throughout the rest of colon
2/3 of all benign adenomas;less than 2cm in diameter attached to a stalk (pedunculated)Large tumors show a range of dysplastic changes
predominantly in the rectosigmoid colon. large(sessile)elevated lesions60 % are larger than 2 cm in diameter; commonly 1/3 of villous adenomas contain foci of carcinoma higher potential for malignant transformation to colorectal carcinoma than tubular adenomas   |  | 
        |  | 
        
        | Term 
 
        | Colorectal Adenocarcinoma |  | Definition 
 
        | 
Men and women equal affected Peaks at 60 to 70; 20 % of cases before age 50Etiology 
low fiber diet, high fat diet, high anaerobic bacterial content, genetic predisposition, Crohn diseaseProtective measures include 
colonoscopy, cruciferous vegetables, calcium, selenium, and aspirin (as COX-2 inhibitor)distributed equally over the entire length of the colonColon cancer can metastasize to the lymph node, lung, liver, and brainElevated carcinoembryonic antigen (CEA) is seen in about 25% of patients.   |  | 
        |  | 
        
        | Term 
 
        | What is the most important characteristic that correlates w/ the risk of malignancy? What is a risk factor progression into cancer? |  | Definition 
 
        |   
Size  
ie, while cancer is extremely rare in adenomas less than 1 cm in diameter, some studies suggest that nearly 40 % of lesions larger than 4 cm in diameter contain foci for cancerhigh-grade dysplasia is a risk factor for progression to cancer.   |  | 
        |  |