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Chapter 3 General
Concepts from Chapter 3 Lecture
34
Biology
Undergraduate 1
02/10/2012

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Term
Organic Chemistry
Definition
Organic Molecules contain Carbon.
Abundant in all living organisms.
Term
Macromolecules
Definition
Large, complex organic molecules.
Term
Carbon
Definition
4 electrons in outer shell (can contain 4 more).
Can have up to 4 bonds (usually single or double).
Can have polar or nonpolar bonds.
Term
Isomers
Definition
Two structures with an identical molecular formula but different structures and characteristics. Structural isomers contain the same atoms but in different bonding relationships.
Term
Cis-trans isomers
Definition
change in positioning around double bond.
Term
Enantiomers
Definition
mirror image of another molecule.
Term
Condensation/Dehydration Reaction
Definition
"removal" of water.
Links monomers to form polymers.
Term
Hydrolysis
Definition
"addition" of water.
Polymers broken down into monomers.
Term
4 major organic molecules and macromolecules
Definition
Carbohydrates, Lipids, Proteins, Nucleic acids
Term
Carbohydrates
Definition
Carbon, hydrogen, oxygen
Term
Lipids
Definition
Composed predominantly of hydrogen and carbon.
Defining feature - nonpolar thus very insoluble in water.
Term
Nucleic Acids
Definition
Responsible for te storage, expression and transmission of genetic information.
Two classes (DNA & RNA)
Term
Proteins
Definition
Carbon, hydrogen, oxygen, nitrogen and traces of others including sulfur.
Amino acids are the monomers
-Common structure with variable R-group.
-20 amino acids.
-Side-chain determines structure and function.
Term
Monosaccharides
Definition
Simplest sugars, Most common with 5 or 6 Carbons.
Term
Glucose isomers
Definition
Glucose and galactose.
Stereoisomers - identical arrangement of bonds, but different arrangement of atoms.
Term
Disaccharides
Definition
Carbohydrates composed of two monosaccharides.
Joined by dehydration or condensation (glycosidic bond).
Broken by hydrolysis.
Examples - sucrose, maltose, lactose
Term
Polysaccharides
Definition
Many monosaccharides linked together to for long polymers.
Examples - Energy storage- starch, glycogen.
Term
Fats
Definition
AKA triglycerides or triacylglycerols.
Formed by bonding glycerol to three fatty acids.
Term
Fatty Acids (saturated)
Definition
All carbons are linked by single covalent bonds.
Tend to be solid at room temp.
Term
Fatty Acids (unsaturated)
Definition
Contain one or more double bonds.
Tend to be liquid at room temp (oils).
Term
Phospholipids
Definition
Amphipathic molecule
-Phosphate region - polar, hydrophilic.
-Fatty acid chains - nonpolar, hydrophobic, tail.
-Form bilayer important in formation of cell membranes.
Term
Steroids
Definition
Four interconnected rings of carbon atoms.
Usually not water soluble.
Small different in chemical struct can mean the difference between testosterone and estrogen.
Term
Protein Bonding
Definition
Joined by dehydration of condensation reaction.
-Peptide bond.
-Forms polypeptides
-Proteins are made up of 1 or more polypeptides.
Broken apart by hydrolysis.
Term
Protein Structure
Definition
Primary - Amino acid sequence (determined by DNA)
Secondary - Folding into compact structure
-Alpha - helix
-Beta - pleated sheet
Tertiary - further folding into 3D shape.
Quaternary - 2 or more polypeptides.
Term
Multimeric Proteins
Definition
Proteins with multiple parts.
Term
5 Factors promoting protein folding and stability
Definition
1.Hydrogen bonds - many weak add to overall strong
2.Ionic bonds and polar reactions - different side chain charges may bond together.
3.Hydrophobic effects.
4.Van der Waal's forces - Weak attractions between atoms.
5.Disulfide bridges - Covalent bonds between 2 Cysteine side chains.
Term
Functional domains within Protein structures
Definition
Modules in proteins have distinct structure and functions.
Term
DNA
Definition
Deoxyribonucleic acid.
Stores genetic information coded in the sequence of their monomer building blocks.
Term
RNA
Definition
Ribonucleic acid.
Involved in decoding genetic information into instructions for linking together a specific sequence of amin acids to form a polypeptide chain.
Term
Monomer
Definition
An organic molecule that can be used to form larger molecules (polymers) consisting of many repeating units of the monomer.
Term
Polymer
Definition
A large molecule formed by linking many smaller molecules (monomers) together.
Term
Explain the importance of shape in macromolecules and give an example of the consequences of shape changes in molecules
Definition
Book
Term
Summarize the interactions involved in protein shape and explain why temperature and pH affect protein shape
Definition
Book
Term
End of chapter 3
Definition
Beginning of chapter 4
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