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Chapter 20*
the rate at which DNA/protein sequences change over time
8
Biology
Undergraduate 2
12/18/2013

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Term
Positive selection
Definition
works to bring a new, favorable mutation or allele to a higher frequency – this type of selection is at work when new adaptations evolve
Term
Negative selection
Definition
opposite of positive selection – allele is selected against – will eventually be lost in the population
Term
Sequence divergence
Definition
referring to the graphs
Term
The Neutral Theory
Definition
-proposes that most mutations in DNA or amino acid replacements between species are functionally neutral or nearly neutral and fixed by random genetic drift
-The assumption of neutrality offers a baseline expectation of how DNA should change over time when natural selection is absent
Term
Molecular Clock
Definition
– foundation is neutral evolution – change in the frequencies of neutral alleles overtime due to drift
-determine the rate at which a protein diverges and can use this as a molecular clock → such as the rate of divergence amongst the globin protein
Term
The rate of amino acid changes in three proteins
Definition
– each line represents the rate at which each protein has changed over time
-the rate at which these are accumulating amino acid substitutions is different (diverging at different rates)
-all equally important (importance doesn't depend on divergent rates)
-the more structural constraint on the protein - the less quickly it will change (and vice versa)
Term
Synonymous sites
Definition
neutral - changes don't affect amino acid
-rate of nucleotide substitution is higher since it doesn't affect the proteins
i.e. introns (around 50% divergence in mammals)
Term
Non synonymous site
Definition
not neutral - change affects amino acid - smaller rate of change
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