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Chap 7, 8, 9
Overview of microbial genetics and essentials of molecular biology
30
Biology
Undergraduate 3
04/25/2011

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Term
DNA Gyrase
Definition
a class II topoisomerase, and enzyme that introduces supercoils by breaking the DNA strand completely to allow winding, then resealing it
Term
DNA Polymerase
Definition
and enzyme that catalyzes the addition of DNTPs onto a DNA strand during replication. Needs RNA primer to work
Term
RNA Primer
Definition
Required to start a new replication chain, made by primase
Term
DNA Ligase
Definition
Seals nicks in DNA strand to complete replication
Term
DNA Helicase
Definition
unwinds replication fork to allow dny synthesis
Term
transposable elements
Definition
segments of DNA that can move from one site on a DNA molecule to another sight on the same molecule or a different molecule
Term
Theta Replication and example of it
Definition
bidirectional replication of DNA from the origin of replication, Ex: E.Coli
Term
what 2 enzymes are used for proofreading replicated DNA?
Definition
DNA Polymerase I and III
Term
Sigma Factor
Definition
bound to RNA, recognizes the promotor region of DNA and binds the RNA polymerase to the gene starting site to do its business for transcription
Term
what are the 2 highly conserved regions of the Promotor on replicated DNA?
Definition
Pribnow Box/-10 region and -35 region
Term
What are the two types of DNA sequences that terminate transcription?
Definition
Intrinsic termination/Rho independent termination and Rho- dependent termination
Term
Rho-dependent termination
Definition
Rho protein recognizes specific DNA sequences and causes a pause in the RNA polymerase to terminate transcription. Requires energy and is only found in prokaryotes.
Term
Operon
Definition
Exist in polycistronic mRNA, is a group of related genes costranscribed on an mRNA that allows for expression of multiple genes to be regulated coordinately
Term
Codon
Definition
nucleic acid triplet that encodes for a single amino acid, any given amino acid can have multiple codons that code for it.
Term
wobble
Definition
when the third position of a codon for tRNA is able to have irregular or lax base pairing
Term
another word for stop codon is ______. why is this?
Definition
nonsense codon, it doesn't code for anything
Term
open reading frame
Definition
the set of codons between the start codon and the stop codon
Term
Shine-Dalgarno Sequence
Definition
ribosomal binding site on mRNA of prokaryotes
Term
Ribosome
Definition
creates proteins from the amino acid codons in RNA. site of protein synthesis, thousands are in each cell
Term
what are the two subunits of eukaryotic ribosomes? what is the full unit called?
Definition
40S and 60S = 80S
Term
what are the 3 main steps of translation?
Definition
1-initiation
2-elongation
3-termination
Term
what are the three tRNA sites of elongation? what do they mean?
Definition
A-site: acceptor, accepts new tRNA
P-site: peptide, forms pp chains
E-site: empty? releases tRNA base
Term
translocation
Definition
movement of tRNA holding the polypeptide from the A-site to the P-site
Term
release factors
Definition
recognize stop codons and cleave polypeptides from tRNA
Term
signal sequence
Definition
a sequence 15-20 residues longat the beginning of a protein that signals to the cell's secretory system that it needs to be exported. also helps keep protein from folding incorrectly
Term
what are the two steps of eukaryotic cell division?
Definition
Mitosis then Meiosis
Term
what 3 things must happen before a eukaryotic mRNA is considered mature?
Definition
1- Capping
2- Poly-A tail
3- Introns are removed
Term
spliceosome
Definition
removes introns from RNA transcripts
Term
telomeres
Definition
the ends of eukaryotic chromosomes full of repetative DNA
Term
telomerase
Definition
enzyme that recognizes the repetativeness of telomeres in eukaryotic DNA and stops replication at the end of the telomeric site.
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