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bmb 252 final
innate and adaptive immune response and stem cells
211
Biochemistry
Undergraduate 2
12/14/2015

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Term
what is an example of a periphery lymph organ?
Definition
lymph nodes, spleen, and epithelium-associated lymphoid tissues
Term
how many receptor's do t-cells have for antigens?
Definition
1
Term
what is interesting about IgM?
Definition
its has several binding sites, but it has the lowest affinity for antibodies
Term
what are eosinophils?
Definition
they are factor's that attract the white blood cells
Term
which antibody is mostly in the blood?
Definition
IgG
Term
what is neoplasm?
Definition
a newly risen tumor
Term
carcinoma refers to ?
Definition
cancer of epithelial cells
Term
sarcoma
Definition
cancer of muscle or connective tissue
Term
leukemia
Definition
cancer of hemiopoetic cells
Term
how many more times are smokers likely to get lung cancer than non smokers?
Definition
15x more
Term
what is the doubling time of a breast cancer tumor?
Definition
100 days
Term
does cancer causing mutations form in somatic or sex cells?
Definition
somatic
Term
is a single mutation enough to cause cancer?
Definition
no
Term
what happens to the size of the nuclei // amount of cytoplasm a cell has as it becomes cancerous?
Definition
nucleus gets very large, cytoplasm shrinks
Term
what does the rate of cancer depend upon?
Definition
mutation rate, number of individuals, rate of reproduction, selection of mutants over the normal
Term
can genetic instability be inherited ?
Definition
yes...it mostly is caused by mutations
Term
how does the ability to differentiate affect the chance of a cell becoming cancerous?
Definition
if the ability to differentiate is shut down, cells will divide aimlessly and cause a tumor, and never settle for a certain type of cell
Term
tumor cells have ___________ (increased/decreased) flow of blood to area
Definition
increased
Term
if you have a diet that is low in vegetables, high in salt, and high in nitrate, what kind of cancer does that predispose you to?
Definition
stomach, esophagus
Term
if you have a diet that is high in fat, low in fiber, and eat fried and broiled foods, what kind of cancer does that predispose you to?
Definition
pancreas, breast, prostate
Term
How would one use the Ames test to test for mutagenicity?
Definition
grow a mutant strain go salmonella that does not require histidine. this mutation also causes a DNA repair mechanism. plate bacteria on agar without histidine. whatever grows in excess, is a tumor so you can say that it is a mutagen
Term
what's alflaloxin?
Definition
fungal toxin from peanuts that causes DNa damage when oxidized
Term
what activates carcinogenes in the Ames test?
Definition
liver extract
Term
do cancer promoters introduce mutations into the DNa
Definition
no
Term
how does HPV cause cancer?
Definition
inserts its genome into basal stem cell genome. causes warts
Term
how does HPV block apoptosis?
Definition
its has two viral proteins, E6 and E7. E7 binds to the Rb protein (stops transcription) Therefore transcription can occur. E binds p53 and induces proliferation
Term
As far as dominant//recessive, how do oncogenes and tumor suppressors work?
Definition
oncogenes are dominant, while tumor suppressors are recessive.
Term
oncogenes
Definition
"gain of function" causes proliferation
Term
tumor suppressor genes
Definition
their genes are deleted so that they acquire a "loss of function" activity and promote proliferation
Term
what happens if only one chromosome has a mutation in a tumor suppressor?
Definition
no damage
Term
how were oncogene identities discovered?
Definition
possible cancer causing encoding peptides were thrown into a mouse. if a tumor develops, then it is a possible oncogene. Ras was the first one to be found
Term
how may a proto-oncogene be converted to an oncogene?
Definition
deletion//point mutation, regulatory mutation, gene amplification, chromosome rearrangement
Term
how does Myc turn into an oncogene?
Definition
via protein amplification
Term
is cdk a protooncogene or an oncogene?
Definition
proto oncogene
Term
what mutations//pathway do all cancers have?
Definition
there is a mutation in p16, which shuts off the signals for cell death. encourages cell to divide by inhibiting Rb, cdk4, allows e2k to bind and continue transcription into S phase
Term
is Rb a tumor supressor or an oncogene?
Definition
tumor supressor
Term
g-1 cdk is what type of cancer causing thing
Definition
proto-oncogene
Term
what does Rb stand for?
Definition
retinablastoma
Term
in order for someone to get restinoblastoma, how many copies in their karyotype have to contain a mutation?
Definition
2...its recessive
Term
what happens if there is a mutation in Ras?
Definition
Ras is a GTPase that needs a signal to cause cell proliferation. however, when there is a mutation, it doesn't even need a signal to divide. it does it on its own
Term
what is Myc?
Definition
cell regulatory protein...causes cell to proliferate
Term
what is representative difference analysis?
Definition
a way to identify tumor suppressor genes
Term
how often is p53 mutated in cancers?
Definition
50% of the time
Term
about what level should p53 be at if it is in a healthy cell?
Definition
low levels
Term
about what level should p53 be at if it is in a sick cell?
Definition
high levels
Term
what happens if the gene p53 is damaged?
Definition
p53 is rather phosphorylated instead of inhibited, which causes cell proliferation
Term
what region of DNA does the p53 bind to?
Definition
p21, which codes to inhibit Cdk...and causes cell proliferation
Term
is p53 gene a tumor supressor or oncogene?
Definition
tumor supressor
Term
What is a Gleevec?
Definition
a synthetic molecule that can inhibit an overactive fusion protein, which would've caused leukemia
Term
what are the three levels of skin?
Definition
epidermis, dermis, hypodermis
Term
which tissue does the dermis come from?
Definition
mesoderm
Term
what secretes collagen?
Definition
fibroblasts
Term
where is the epidermis derived from?
Definition
ectoderm
Term
which layer of skin is leather made from ?
Definition
dermis
Term
which layer of the skin is fatty?
Definition
hypodermis
Term
do keratinocytes have nuclei?
Definition
no
Term
what kind of connection do prickle cells have ?
Definition
desmosomes
Term
how do keratinocytes lose their nuclei?
Definition
they move into the granular level and partially activate apoptosis
Term
what are the levels of epithelial cells from bottom to top?
Definition
basal cells, prickle cells, granular level, squares
Term
how long does it take a basal stem cell to move to the top of the squames and flake off?
Definition
1 month
Term
what layer of epidermis gives it its strength?
Definition
prickle cells
Term
how are embryonic stem cells different from basal layer stem cells?
Definition
embryonic cells give rise to cells of a certain type, basal cells give rise to a specific type
Term
what are the two choices of a stem cells going through differentiation?
Definition
they have the choice to stay a stem cell and they have the choice to differentiate.
Term
how are basal cells attached to the basal lamina?
Definition
via integrins
Term
what are the two ways that a stem cell can produce unequal daughter cells?
Definition
through an unequal environment (one may receive a signal that the other does not.) or through asymmetric division
Term
do basal k's have to remain attached to the basal lamina to remain undifferentiated?
Definition
no, but as they are pushed up, they are forced to differentiate.
Term
what are the differences between transit amplifying cells in the the epidermis and basal stem cells?
Definition
basal cells can divide indefinitely and at a low rate. they also have a high level of intern beta 1. transit amplifying cells have low concentration of intern beta 1 and divide frequently, but can only divide a certain amount of times
Term
do terminally differentiated epithelial cells contain integrin beta 1?
Definition
no
Term
what kinds of tissues are derived from the embryonic epidermis?
Definition
sweat, tears, saliva, milk
Term
what makes the milk in breast?
Definition
alveolus
Term
after birth, how does the breast stop making milk?
Definition
secretory cells die by apoptosis and macrophages eat the dead cells
Term
where is the nervous system derived from?
Definition
ectoderm
Term
what happens at the apical/basal ends of sensory epithelial cells?
Definition
basal end: new stem neurons are formed. apical: signal transferred to change membrane potential
Term
how many kinds of smell receptors are expressed in each type of olfactory sensory neurons?
Definition
one
Term
what are glomeruli?
Definition
the section of the brain that is responsible for that smell
Term
what is the Corti?
Definition
the apparatus that holds auditory hair cells together
Term
what are stereo cilia in the ear filled with?
Definition
actin
Term
what happens when a a sound is heard?
Definition
the frequency hits the auditory hair cells, causing resonance and the hair to vibrate at the corresponding tilting
Term
what happens when cilia in the ear are tilted?
Definition
ions flow into the cell, causing action potential, releases neurotransmitters, sends signal to the brain
Term
can photoreceptors be replaced?
Definition
no
Term
can rhodopsin be replaced?
Definition
yes...takes 10 days
Term
what are the two types of alveolar walls?
Definition
Type I are small and allows gas exchange. Type II secrete a surfactant which reduces surface tension ....keeping the alveoli from collapsing.
Term
what is the circulatory system type within alveoli cells?
Definition
blood capillaries
Term
what is the purpose of goblet cells in large airways?
Definition
secrete mucus..keeps from getting dried out
Term
which embryonic tissue forms the gut and airways?
Definition
endoderm
Term
what is the difference between squamous cells of the respiratory tract and the squamous cells of the epithelial cells?
Definition
respiratory cells keep their nucleus and are kept moist
Term
which organ of the digestive tract secretes low pH acid to break down food?
Definition
stomach
Term
which organ of the digestive system secretes bicarbonate to neutralize pH?
Definition
pancreas
Term
which organs of the digestive tract secrete mucus?
Definition
small intestine and stomach
Term
where are the microvilli found in the small intestine?
Definition
lumen
Term
where, what are panneth cell?
Definition
found in the small intestine, they are the stem cells found at the bottom of microvilli. They remain at the bottom by moving down after each cell division while the other cells move to the top of the villi
Term
what do panneth cells do?
Definition
sectete defensins which kill bacteria
Term
what controls proliferation in the small intestine?
Definition
Wnt signaling
Term
what is the name of the macrophage like cell in the liver?
Definition
Kupfer Cell
Term
what are hepatocytes?
Definition
fully differentiated cells in the liver that can regenerate
Term
where is cartilage, bone, fibrous tissue derived from?
Definition
mesoderm
Term
where are muscles and the entire vascular system derived from ?
Definition
mesoderm
Term
where are tubules, ducts, and supporting tissues of gonads and kidneys derived from ?
Definition
mesoderm
Term
what are blood channels in the liver called?
Definition
sinusoids
Term
what causes new blood vessels to grow?
Definition
shortage of oxygen --> "hypoxia inducible factor" --> "endothelial growth factor"
Term
where is the epithelia tissue derived from ?
Definition
endoderm//ectoderm
Term
what do parasites do?
Definition
wrap around blood vessels
Term
what are the three types of blood cells?
Definition
erythrocytes, leukocytes and platelets
Term
which type of blood cells transport O2 and Co2?
Definition
erythrocytes
Term
which blood cell type migrates out of the blood?
Definition
leukocytes
Term
where are platelets derived from ?
Definition
megakaryocytes
Term
do erythrocytes have a nucleus, ribosomes, or mitochondria?
Definition
no
Term
of leukocytes, what are the three individual types?
Definition
lymphocytes, monocytes, granulocytes
Term
how could you tell the difference between a granulocyte and a monocyte?
Definition
granulocytes have grains in their cytoplasm while monocytes have a clear cytoplasm and a large nucleus.
Term
what are the three types of granulocytes?
Definition
neutrophil, Eosinophil, basophil
Term
what is the most common type of white blood cell?
Definition
neutrophils
Term
purpose of basophils
Definition
secrete histamien///like mast cells
Term
purpose of eosinophils
Definition
destroy parasites, modulate allergic inflammatory response
Term
what other white blood cell do the monocytes work with to phagocytize cells?
Definition
neutrophils
Term
two types of monocytes?
Definition
macrophages and dendritic cells
Term
three types of lymphocytes
Definition
B cells, T cells, natural killers
Term
how do platelets form?
Definition
they are broken off from mega karyocytes...which form baby blood cells in the BONE MARROW
Term
how to the white blood cells know to come out of the tissue during an inflammatory response
Definition
chemotaxis attract released from site...acts as a feedback loop
Term
are t cells formed in the bone marrow?
Definition
no, but all other cells are
Term
what are the two stem blood cell lines?
Definition
myloid and lymphoid line
Term
how do Hemopoietic stem cells survive in culture if they always have to be attached to the stromal cells?
Definition
they have to constantly be given the right signals
Term
are stromal cells fibroblasts?
Definition
yes
Term
when looking at the connection between the stromal cells and the hemiopoetic stem cells, how are they connected?
Definition
the hsc present Notch, the stromal cells present ligands
Term
what causes anemia?
Definition
a mutation in the SCf (ligand by stream cells) // and kit (by hsc)
Term
regardless of how stromal cells are connected to the hsc, what is the same?
Definition
they are membrane bound
Term
what is a myoblast
Definition
precursor of skeletal muscle fibers
Term
what are myoepithelial cells made of?
Definition
multiple myoblasts fused together
Term
where do myoblasts come from ? which layer
Definition
mesoderm
Term
how is muscle cell length growth achieved
Definition
addition of myoblasts
Term
how is muscle cell size growth achieved
Definition
addition of myoblasts and contractile fibers
Term
what does myostatin serve as in muscle cells?
Definition
a negative control
Term
are myoblasts stem cells?
Definition
yes
Term
what are the types of connective tissues?
Definition
smooth muscle cells, fat, fibroblasts
Term
where are mesenchymal stem cells found?
Definition
bone marrow
Term
would you be able to grow fibroblasts in culture
Definition
yes
Term
what are chondrocytes?
Definition
cells of the cartilage
Term
what happens when you take fibroblasts and put them into a culture?
Definition
they turn into chondrocytes
Term
how do osteoclasts destroy bone?
Definition
secretion of acid hydrolase
Term
what is the precursor of a osteoclast
Definition
monocyte
Term
in the development of long bones, what are the two opposing factors?
Definition
chondorcytes and osteoclasts
Term
osteoporosis
Definition
low bone density...osteoclast activity is wining
Term
osteopetrosis
Definition
high bone density which means osteoblast activity is winning
Term
what are the two things that stem cells should posses?
Definition
self-renewal: numerous cell divisions
potency: ability to turn into any cell
Term
totipotency
Definition
can differentiate into general embryonic tissue
Term
pluripotency
Definition
can turn into any of the 3 types of embryonic cell types (mesoderm. endoderm, ectoderm
Term
do embryonic stem cells have high levels of telomerase or low?
Definition
high
Term
basal layer keratinocytes are what type of stem cell?
Definition
unipotent
Term
what is the main function of adult stem cells?
Definition
regeneration and repair of tissues
Term
what is somatic cell transfer?
Definition
type of cloning using electric shock of oocyte nucleus
Term
which part of the immune system is fast, but not very specific?
Definition
innate
Term
do plants have both types of immune systems?
Definition
no, they only have innate
Term
the innate immune system has a "general body defense system." what is included in that?
Definition
chemically low pH in the stomach, skin, and maintenance of stasis by washing out of pathogens
Term
do pathogens HAVE to be coated in order for macrophages and neutrophils to phagocistize them?
Definition
no, doesn't matter
Term
what is the connector cell between the adaptive and innate immune systems?
Definition
the dendritic cells phagocytize the pathogen and present their parts to the adaptive immune system
Term
are antigens or antibodies on the pathogen?
Definition
antigens
Term
which type of lymphocyte secretes antibodies?
Definition
b cell
Term
what type of cell in adaptive response marks pathogen for degradation?
Definition
b cell
Term
what are examples of primary lymphoid organs?
Definition
thymus // bone marrow
Term
what is an example of a periphery lymphoid organ?
Definition
spleen, tonsils, Peye's patches
Term
where are both b and t cells made?
Definition
both from homeopotic stem cells in the bone marrow, but then t cells migrate to thymus to develop further
Term
whats the difference between a basophil and a mast cell?
Definition
mast cell resides in the tissues
Term
what is the clonal selection theory?
Definition
binding of antigen stimulates a lymphocyte both to proliferate and to differentiate into effector cell
Term
how many antibodies are on one b cell
Definition
one type
Term
which type of b cell secretes antibodies?
Definition
effector cells
Term
between b and t cells, which one can act long distant?
Definition
b cells
Term
what is the part of the antigen called that binds to the antibody?
Definition
epitope
Term
are memory cells produced from effector cells or naive cells after the presentaiton of an antibody?
Definition
naive cells
Term
how can the lymphocytes learn not to identify their own antigens
Definition
body cells that have strong affinity for own antigens are killed. also, there is no co-stimulatory signal presented from body's antigens
Term
what are antibodies made of?
Definition
immunglobin
Term
how are antibodies attached to memory cells and naive cells?
Definition
they are in the membrane
Term
how many binding sites does an antigen have?
Definition
2
Term
how doe the hinge region of an antibody help facilitate phagocytosis?
Definition
its bendy and can take two antigens at the same time
Term
which end of the antibody binding site binds to the antigen? (Carboxylic or n-terminus?)
Definition
n terminus
Term
what are the 5 types of antibodies? how are they different?
Definition
MADGE...different in tail regions (the bottom butt end)
Term
what is the first class of antibody made?what is its structure?
Definition
IgM...pentameter..poor affinity
Term
what is IgD?
Definition
expressed after a b cell leaves the bone marrow. only can be expressed in very low concentrations
Term
when forming antibodies, which chain is formed first?
Definition
heavy chain, then light chain
Term
which antibody has GREAT affinity?
Definition
igG
Term
what is the major class of antibody in the blood?
Definition
IgG
Term
which is the only antibody that can pass from the mother to the fetus?
Definition
igG, igA
Term
which antibody is produced in large quantities in the secondary immune response
Definition
igG
Term
is IgG a monomer or a dimer?
Definition
monomer
Term
which class of antibodies is found in secretions?
Definition
igA....AQUA
Term
what is the structure of igA
Definition
its is a monomer in blood and a dimer in secretions...it has 8 chains
Term
how does IgA get from the extracellular fluid to the lumen?
Definition
Can be transported through secretory epithelial cells from the extracellular fluid into the secreted fluid by Fc receptor that is unique to secretory epitheli
Term
what is the role of IgE
Definition
IgE- Empty the histamine granules by Exocytosis, attracts Eosinophils
Term
what are the two types of light chains?
Definition
kk lambda, lambda
Term
which antibody class is involved in the secondary late response?
Definition
igG
Term
how many binding sites does IgG have?
Definition
2...very high affinity
Term
what is the structures within antibodies variable regions?
Definition
beta sheets, connected by disulfide bonds,
Term
how are light chains formed?
Definition
J_V-C binding
Term
what can t cells be activated by?
Definition
dendritic, macrophages, b -cells
Term
what activates b cells?
Definition
antigens and t helpers
Term
how many binding sites do t cell receptors have for antigens?
Definition
1...formed by an alpha and beta domain
Term
how are t and b cell receptors different?
Definition
t: Can only be membrane-bound
Has two chains:  and 

Variable and constant domain

One binding site
VDJ – joining
No somatic hypermutation
Weak binding

b: Can be membrane bound or secreted
Has two light and two heavy chains
Variable and constant domains
Two binding sites
VDJ-joining
Somatic hypermutation
Binding gets stronger late in response
Term
what is perforin? which mechanism is this of killing cells?
Definition
a protein that cytotoxic t cell releases to dig into the pathogen and put proteases through ....induces apoptosis..mechanism 1
Term
what is the mechanism II of inducin apoptosis in cells?
Definition
Fas-ligand binding...trimer...actiavtes caspase 8
Term
what kind of t cells recognize MHC class I
Definition
cytotoxic t cells
Term
what kind of t cells recognize MHC class II cells?
Definition
t helpers
Term
class II MHC is most likely to be expressed on which type of cell?
Definition
expressed on specialized antigen-presenting cells (mostly dendritic cells, also B cells and macrophages)
Term
what is the structure of MHC cells?
Definition
both transmembrane heterodimers with extracellular N-terminal domains that bind antigen for presentation to T cells.
Term
does one type of MHC bind to one type of peptides
Definition
no, one type of MHC can bind many peptides
Term
how many genes are from mom and dad respectively for MHC proteins?
Definition
3 and 3
Term
which MHC binding site will better suit longer peptides?
Definition
MHC II
Term
what section do CD8 and CD4 bind to on MHC
Definition
invariant regions
Term
which t cells express cd8
Definition
cytotoxic t cell
Term
which t cells express cd4
Definition
t helper cells
Term
which MHC class presents peptides that were endocytized?
Definition
class II
Term
which MHC class presents peptides from cytosol?
Definition
class I
Term
what is positive and negative selections in the thymus
Definition
Negative selection in the thymus of developing self-reactive T cells: T cells whose receptors bind strongly enough to the complex of a self peptide and a self MHC protein are eliminated.
Positive selection during T cell development: only T cells that can bind to cell’s own MHC proteins should survive. T-cells that cannot bind to MHC proteins at all should die. Cells that bind weakly to MHC-self protein complexes are believed to be able to bind weakly to cell’s own MHC peptides.
Term
how are immunostimulants recognized?
Definition
pattern recognition receptors
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