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BIS2B: Midterm 1_Rosenheim
UC Davis
119
Biology
Undergraduate 1
01/27/2018

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Term
[image]
relationship between biodiversity and ecosystem function
Definition
x: biodiversity
y: ecosystem function

Best Case
Ecosystem function declines only slightly in response to moderate loss of biodiversity
widely supported by experimental evidence
Term
[image]
relationship between biodiversity and ecosystem function
Definition
x: biodiversity
y: ecosystem function

Worse Case
Even very slight declines in biodiversity cause major loss of ecosystem function
Term
[image]
relationship between biodiversity and ecosystem function
Definition
x: biodiversity
y: ecosystem function

OK; not most ideal
Term
[image]
Definition
This sort of function is typical for any compound (or process) that is not needed by the organism (performance is maximal when the intensity of the condition is zero), but that becomes toxic when present in high concentrations. Examples include organic or inorganic toxins (e.g., pesticides, chemical pollutants) or ionizing radiation.
Term
[image]
Definition
This sort of function is typical for any condition that is optimal at intermediate values, but for which organismal performance declines at very low intensities or very high intensities. Examples include temperature, pH, and some macronutrients or major resources that can become injurious or toxic when present at very high levels (e.g., light for plants).
Term
[image]
Definition
any essential micronutrient (NaCl, Cu, Zn, B, Mn, Mo). This sort of function is typical for any condition that is required at very lowlevels but which eventually becomes toxic at high concentrations.
Term
[image]
Definition
photosynthetic rate of a plant changes with increasing light intensity

**NOTE X,Y AXIS
Term
Liebig’s Law of the Minimum to plant fitness
Definition
[image]
Term
[image]
minimum number of seeds that the plant could produce over its lifetime
Definition
0
Term
[image]
maximum number of seeds that the plant could produce over its lifetime
Definition
15
Term
[image]
Definition
optimal allocation to leaves would change if the environmental availability of light suddenly decreased by approximately 50%
Term
qx
Definition
lx-(lx+1)/lx
Mortality Rate Per Day

1-2/1
Term
lx
Definition
Proportion of original cohort surviving to reach age x

divide each by row 1, column 2
Term
[image]
Definition
mortality rate of the plants versus plant age

** DO NOT INCLUDE LAST ROW
Term
[image]
Definition
birth rate versus population density for a sexually reproducing organism in which mates become hard to find at low population densities

**NOTE X,Y AXIS
Term
[image]
Definition
Population growth versus time in which you contrast two population growth cures: (a) one in which the population grows following ΔN/Δt = rN.
(b) one in which the population growsfollowing ΔN/Δt = rN(1-N/K).

*Assume that the populations start at a very small size (near zero), that r> 0, and that the carrying capacity, K, is 50.
Term
[image]
Definition
two large tadpoles are acting independently of one another, the probability that the small tadpole survives exposure to BOTH tadpoles is (1-p)•(1-p) = (1-p)2, and the probability of cannibalism is therefore [1 -(1-p)2].
p = 0.10
Term
logistic regression
Definition
[image]
Term
Ro
Definition
Basic Reproductive Rate

Ro > 1 : population grows
Ro = 1 : population replaced
Ro < 1 : population decreased
Term
adaptation
Definition
any trait (structural, physiological, or behavioral) thatenhances the reproductive success of an organism in its environment.
Term
conditions are necessary and sufficient for the process of evolution by natural selection
Definition
1.Phenotypic variation. There must be variation in the traits (structural, physiological, or behavioral) expressed within a population of the focal organism.
2.Inheritance. The variation in the phenotype must be passed on from parents to offspring, such that offspring resemble their parents. (Note: the resemblance need not be perfect.)
3.Differential reproductive success. Certain heritable variants must have a greater mean expectation of reproductive success than other heritable variants.
Term
Bacterial cells can exchange genes
Definition
bacterial conjugation
transformation
transduction
Term
bacterial conjugation
Definition
probably the most important mechanism. Bacteria are brought into close contact (by sex pili) and a small cytoplasmic bridge is formed between the two cells, through which part or all of a single strand of DNA is passed from the donor cell to the recipient cell. Through genetic recombination,the donor DNA can be incorporated stably into the recipient cell’s chromosome. Plasmids are generally involved, and may carry genes conferring novel abilities to use special carbon sources or be resistant to antibiotics.
Term
transformation
Definition
DNA leaks out of a dead bacterial cell and is taken up as free DNA by living cells and incorporated into their chromosome.
Term
transduction
Definition
a bacteriophage ‘accidentally’ packages up a part of the host (bacterial) chromosome instead of the viral genome. The bacteriophage can then inject the bacterial DNA into another bacterium, and the transferred DNA can be incorporated stably into the recipient bacterium’s chromosome.
Term
bacteria and fungi produce antibiotics
Definition
competing with other microorganisms for access to food resources
Term
major ecosystem services that can be described as “provisioning”
Definition
1) Food: Inc
2) Water: Dec
3) Wood
4) Biofuels: Inc
5) Genetic Resource: Dec
Term
land subsidation
Definition
water is being used faster than it is replenished
systems become compacted, irreversible
Term
Probiotics
Definition
may be recommended after a course of antibiotics to aid in the re-colonization of the patient’s body by beneficial bacteria
help compete with pathogen
Term
biodiversity
Definition
full diversity of life on Earth, including the diversity of all organisms in all habitats and at different levels of biological organization
Term
difficult to know whether or not an environmental perturbation has caused extinction and thereby reduced species-level biodiversity
Definition
1) much of the species-level biodiversity present on earth has not yet been described
(2) it is hard to know with certainty whether a given species has actually gone extinct, or whether instead its densities have declined to such low levels that it is simply hard to document its continued existence.
Term
Shannon-Wiener index
Definition
measures biodiversity
incorporates the evenness of the different species’ abundances
Term
Endotherms
Definition
metabolically-generated heat is the predominant source of warmth
Term
structure of an enzyme ‘tunes’ that enzyme to function optimally at a particular temperature
Definition
To function properly, enzymes need to maintain a proper shape, but cannot be entirely rigid either, because conformational changes are often a key part of enzyme function.So, to work right, enzymes need just the right amount of flexibility.
Term
Enzyme Structure in Warm Climates
Definition
More rigid

*the kinetic energy of the atoms that make up the protein molecule is greater, and therefore more (or stronger) chemical bonds are needed to maintain the shape of the enzyme
Term
Enzyme Structure in Cold Climates
Definition
More Flexible

*Fewer Bonds needed
Term
visible light in the violet-blue and orange-red wavelengths (400-500 and 600-700 nm)
Definition
wavelengths of light that are most important in providing the energy for photosynthesis
Term
A system with strong negative feedback is likely to respond to an experimental perturbation
Definition
by tending to move the system back to its original equilibrium
Term
Scramble competition
Definition
*Involves an approximately equal sharing of resources among consumers
*can have a very strong influence on population growth rates
Term
contest competition
Definition
*Exactly compensating density dependence
*occurs when the number of individuals surviving competition is constant across a range of high values of initial number of competitors
Term
Carrying capacity
Definition
birth rate = death rate
Term
density-dependent immigration to the recipient population
Definition
CONSTANT NUMBER of immigrants colonizes a recipient population each year, and the recipient population’s size varies from year to year, this generates
Term
essentialism
Definition
proposed that the natural world contains a number of discrete and unchanging forms
Term
geologists in the 1700’s and 1800’s
Definition
*helped establish earth was older
*sedimentation was gradual, but had produced very thick layers of rock
*erosion was gradual, but had produced very deep valleys
Term
Jean Baptiste de Lamarck
Definition
* arguing that fossils forms could be linked through different sedimentary deposits, and leading to currently living forms
* hypothesizing that evolution proceeded gradually over a very long time frame
*suggesting that changing environmental conditions could be a cause of evolutionary change
*rejecting central aspects of the theory of essentialism
Term
scala naturae
Definition
*Plato
*“great chain of being”
*
Term
Darwin and Wallace
Definition
*Theory of NS
*explained how evolution could occur as an automatic process that could produce adaptation
Term
seeds worth of water harvested
Definition
[image]

downhill slope
Term
seeds worth of light harvested
Definition
[image]

uphill slope
Term
more diversity
Definition
higher biomass
Term
Density Dependent Immigration
Definition
more movement when recipient has less competition

Big pop -> small pop
Term
Competition Types
Definition
1) Exploitative -> scramble -> over compensating density dependence
2) Interference -> Contest -> Exactly Compensating Density Dependence
Term
Regulating Services (Abiotic)
Definition
CLimate
Air Quality
Flood Regulation
Erosion Regulation
Term
Regulating Services (Biotic)
Definition
Disease Regulation
Pest Regulation
Pollination Service
Human Produced Hazard Regulation
Term
Erosion
Definition
loss of genetic resources
Term
Regulating Services
Definition
Features that help stablaize the environmenet
Term
Probiotic
Definition
help compete with pathogen
(Ex. Clostidium dificille)
Term
Species Richness
Definition
does not capture relative proportions

(Ex. # of different types of species: A, B,C =3)
Term
Diversity Calculation
Definition
Pi^(-Pi)
Term
species loss
Definition
decrease in biodiversity
Term
Selection Effect
Definition
one species does most of work; extinction causes loss of star species
Term
Complementarity
Definition
need everybody to do special job for ecosystem function
Term
Minimize impact of diseased centers
Definition
increase diversity
Term
Ecological Niche
Definition
Set of environmental conditions combined with the availability of key resources that must be satisfied simultaneously in order to grow and repro
Term
Acclimitization
Definition
not instantly sometimes
adjusting to temperture/ abiotic conditions
Term
Antibiotics
Definition
Natural compounds from fungi/ bacteria
Inhibit growth + alter natural processes
Term
Plasmids
Definition
small circular DNa molecules not integrated
highly mobile
can be picked up by bacteriophages
Term
Differential Fitness
Definition
How many children, reproductive success
Term
Ecology
Definition
slow down in reproductive success, causes struggle for existence
Term
Global Warming Problems
Definition
Marine- pH drop, CO2 in air absorbed by oceans, intereferes CaCarbonate form

Terrestrial- Hot earth: visibile light from sun radiated as infrared absorbed by CO2 and trapped
Term
Resource
Definition
anything needed by organism for growth, used up and no longer available for use
Term
Classes of Organisms
Definition
1) Autotrophs
A)Photoautotrophs
B) Chemoautotrophs

2)Heterotrophs
Term
Chemoautotrophs
Definition
oxidize inorganic compounds
Term
Photoautotrops
Definition
energy from sun
Term
Photosynthesis Equation
Definition
6H2O + 6CO2 + light -> C6H12O6 + 6O2
Term
Ultraviolet Light
Definition
WL: 100-400 nm
*sunburn
*used in photosynthesis
Term
Infrared
Definition
WL: >700 nm
*photosynthetically active radiation
Term
Photosynthetically Active Radiation
Definition
capture pigments
absorbs orange/ red light
violet -> purp
green reflected: green plants
Term
Phenotypic Plasticity
Definition
One genotype produces multiple phenotypes
Term
Stomata
Definition
pores in leaves allow CO2 in
guard cells
loses H2O in transpiration
Term
Transpiration
Definition
leaves lose water when stomata open
Term
Root Elongation
Definition
explore soil
look for elements
Term
Root Branching
Definition
expands SA in good soil
Term
Trade-off
Definition
can use energy 1 at a time
either this or that
Term
Light Max
Definition
amount of light plant can capture if 100% effort is in making leaves
Term
Water Max
Definition
amount of water plant can capture if 100% effort is in making leaves
Term
Cohort
Definition
group of species born around the same time
Term
lx
Definition
proportion cohort surviving to age x
Term
qx
Definition
mortality rate
Term
mx
Definition
birth rate
Term
Project population growth
Definition
Nn = Ro^n x No
Term
Germ cell lineage
Definition
heavier investment in repair, produce gametes, never senesed
Term
Somatic Cell Lineage
Definition
never produce gametes
only need to function for 1 generation
disposable
accumulate damage
Term
Fission
Definition
body rips in half
both parts generate
Every cell involved in reproduction
never dies
Term
Budding
Definition
breaks off
regenerates parts
Term
Negative Feedback
Definition
returns towards equillibrium
creates output influences ongoing turnign of process
*must be stronger
Term
Positive Feedback
Definition
has stimulatory/ accelerated effect w/ ongoing processs
Term
Intrapecies Competition
Definition
competition with species
Term
Competition
Definition
interaction between individuals brought about by shared requirement for resource
leads to reduction in performance in some competing individuals
Term
Exploitative Competition
Definition
no direct interaction with competitors
expressed indirectly by consumption
Term
Interference Compettion
Definition
direct interaction
Term
Scramble Compettion
Definition
shared resource divided equally
Term
Contest Competition
Definition
Shared resource dicided highly unequal
Term
Overcompensating
Definition
how many competitors start vs how many die
Term
Carrying Capacity (K)
Definition
populations converge
highest density of species the environment can stably support
Term
Cannibalism
Definition
most effective expression of intraspecific competition
Term
Reasons for Cannibalism
Definition
pop density high -> cannibalism
pop density low -> no cannibalism
Term
Plato's Ideas
Definition
Essentialism
Great Chain of Being
Term
Essentialism
Definition
number of unchanigng emphases
emphasizes constancy and discontinuity
Term
Jean Baptiste de Lamarack
Definition
WHAT: Spontaneous generation
WHY: Engien was intrinsic to organism to strive for perfection
HOW: inheritance of acquired characteristics
-organ strengthened by use
- acquired forms heritable x
Term
Charles Darwin + Alfred Wallace
Definition
Theory of Natural Selection
Common ancestor
3 reasons for NS
Term
Inheritance
Definition
Babylonians
Aristotle
Scientists- reciprocal cross; inheritance blending process

* Plant A (M) + Plant B (F) = Plant C
* Plant A (F) + Plant B (M) = Plant C
- males not dominant
Term
resource-weighted estimate vs
consumer weighted density estimate
Definition
UNIFORM DISTRIBUTION
both numbers equal

SCATTERED DISTRIBUTION
consumer weighted more accurate
Term
Senescence
Definition
an increase in mortality rate per day or decrease in birth rate as individuals get older
Term
N<< K
Definition
[image]
Term
N=K
Definition
[image]
Term
Senescence
Definition
an increase in mortality rate per day or decrease in birth rate as individuals get older
Term
N<< K
Definition
[image]
Term
N=K
Definition
[image]
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