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Biology
a summary of the AQA biology syllabus
116
Medical
12th Grade
09/18/2012

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Term
Front
Definition
Back
Term
tissue
Definition
group of similar, specialised, differentiated cells (e.g. capillary - just one type of cell)
Term
organ
Definition
aggregation of tissues performing specific physiological roles
Term
system
Definition
organisation of organs performing life processes (7) e.g. reproductive, skeletal
Term
differentiation
Definition
process of becoming adapted for specific function e.g. squamous epithelial cells
Term
osmosis
Definition
movement of water molecules across membrane from high to low water potential
Term
water potential of pure water?
Definition
zero
Term
adding solutes to pure water...
Definition
water potential more -ve water moves from high w.p. to low w.p.
Term
artery
Definition
heart -> rest of body. Walls thick and muscular, lining (endothelium) folded to allow expansion to w/stand high pressure from systole. All carry oxygenated blood (not pulmonary)
Term
arteriole
Definition
< artery. Network thru body. Direct blood to areas of demand by contracting/relaxing sphincter muscles (vasoconstriction/dilation)
Term
vein
Definition
somatic --> heart. Wider lumen than equivalent artery, less elastic. Valves prevent backflow. Flow aided by contractions of skeletal muscle. All carry deoxygenated blood (not pulmonary veins)
Term
where is tissue fluid found?
Definition
bathes all cells in tissues
Term
composition of tissue fluid
Definition
substances that leave blood, e.g. oxygen, water (solute), nutrients. Waste from cells
Term
purpose of tissue fluid
Definition
transports oxygen and nutrients to cells from blood, metabolic waste products from cell to blood
Term
how does tissue fluid leave blood in capillaries
Definition
1) at arteriole end of capillary bed, pressure higher than in surrounding fluid so fluid is forced out (overcomes osmosis). 2) as it leaves, pressure decreases in capillaries increasing as nearer to vein end of capillary bed. 3) lower w.p. at vein end (+ lower pressure) means that some water can return to blood via osmosis, any excess drains back into blood via lymph system. Tissue fluid doesn't contain big proteins e.g. erythrocytes as these are too large to push btw walls.
Term
order of blood vessels heart --> heart
Definition
heart -> arteries -> arterioles -> capillaries -> veins -> heart
Term
how are capillaries adapted to function
Definition
walls: single layer, squamous epithelium, Narrow lumen = erythrocytes squashed flat = short diffusion path. Numerous/highly branched = large SA for diffusion. Narrow diameter = permeate tissues, near cells. Spaces between endothelial cells - w.b.c. can reach infection
Term
can capillaries serve every cell in body?
Definition
no - too many, tissue fluid needed
Term
2 major adaptations of most gas exchange surfaces
Definition
high SA, thin - decrease diffusion path - maintains steep concentration gradient. Both increase RoDiff.
Term
3 things that organisms need to exchange w/ environment
Definition
oxygen/nutrients, waste (e.g. carbon dioxide & urea), heat (regulate temperature)
Term
capillary
Definition
arteriole -> capillary (beds): smallest blood vessels. Efficient exchange of substances w/ cells. Always found near cells in exchange tissues (e.g. alveoli) - one cell thick so short diff. path. Large number = large SA for exchange.
Term
how does tissue fluid leave and return to blood?
Definition
1. arterial end: high hydrostatic pressure forces tissue fluid (water, glucose, vitamins, minerals, amino acids, hormones) out - ULTRAFILTRATION. 2. after supplying substances to cells, tissue fluid must return to blood. At venule end, reduced hydrostatic pressure allows large proteins, too big to leave blood, to have osmotic effect: water (w/ waste) moves back into capillary. 3. remaining tissue fluid drains into lymphatic system where anti-backflow valves and contraction of skeletal muscles transports it back to the heart
Term
antibiotics
Definition
a range of chemicals that kill or inhibit growth of bacteria in a variety of ways
Term
how do (some) antibiotics work
Definition
1. inhibit enzymes needed to make bonds in cell walls - prevents growth and weakens wall (permeable). 2. water moves into cell by osmosis 3. cell wall can't w/stand pressure and bursts - OSMOLYSIS
Term
ethics of antibiotics
Definition
1. only used in life threatening situations: decrease antibiotic resistance vs. too much time off, lower standards of living, more suffering. 2. not for dementia sufferers: forget to take which increases resistance vs. their right to treatment. 3. not for terminally ill: increase resistance vs. decrease survival, lower life quality.
Term
MRSA
Definition
cause range of infections: minor skin to life-threatening e.g. meningitis & septicaemia. Takes a long time to diagnose and prescribe right antibiotics during which time patient may die. Drug companies are therefore trying to develop alternative treatments. Reduce vectors e.g. doctors handwashing
Term
antibiotic resistance in mycobacterium tuberculosis
Definition
vaccine lowered infection/death rate. NS favoured multi-drug resistant strains in population so evolved resistance. Now a 6 month drug regime is required, however the bacterium is still evolving so drug co.s need to stay ahead of the curve.
Term
what are mutations and how do they give rise to new characteristics
Definition
1 or more bases added, deleted, replaced during replication. --> different primary protein structure (amino acid sequence). --> different protein/enzyme --> disruption of metabolic pathways leading to production of other substances, including proteins, e.g. those responsible for characteristics.
Term
why is antibiotic resistance on the rise?
Definition
doctors under pressure to prescribe for minor ailments. Used to treat viral diseases & secondary infections. Courses not completed. Patients stockpile for use later. Over-use in intensive farming
Term
how is antibiotic susceptibility in bacteria determined?
Definition
suitable urine/blood/stool etc made into suspension of bacteria, placed on nutrient agar and incubated. Antibiotic disks are placed on agar and relative zone of inhibition compared. Paper disk used as control.
Term
how can mutations in bacterial DNA lead to antibiotic resistance?
Definition
Mutations: change in DNA base sequence -> proteins -> characteristics i.e. antibiotic resistance. E.g. MRSA: methicillin can't inhibit enzyme that builds cells walls due to altered enzyme structure. Osmolysis can't occur
Term
how is antibiotic resistance passed on?
Definition
vertical - bacteria reproduce asexually (nt mitosis) - e/ daughter exact copy of parent (incl genes & antibiotic resistance in plasmid loop). Horizontal - 2 bacteria join via conjugation tube; copy of part of plasmid loop passed across
Term
why is MRSA especially prevalent and dangerous in hospitals?
Definition
patients older, sicker, weaker than general population - more vulnerable to infection. They are in close proximity, staff act as vectors. More antibiotics are used so more mutant strains.
Term
define disease
Definition
abnormality of organism that affects performance of vital functions and usually gives diagnostic signs
Term
outbreak of disease
Definition
a few isolated individuals in localised area contract disease
Term
epidemic
Definition
outbreak in large number of population in several communities (but not across significant barriers)
Term
pandemic
Definition
epidemic across continents
Term
7 types of disease and their risk factors
Definition
Allergic - hyposensitivity to antigens. Deficiency - not enough nutrients (e.g. scurvy). Degenerative - old age. Genetic - gene mutations. Infectious - living organisms, communicable. Lifestyle - smoking, diet etc. Mental - Alzheimer's etc.
Term
3 ways pathogens penetrate organism's interface w/ environment and how organism resists.
Definition
Gas exchange system - invade cells in alveoli - trapped in droplets of mucus in lung epithelium - moved by cilia to stomach where destroyed by HCl. Skin - pathogens enter blood via damaged skin - clotting helps to prevent. Digestive system - survive HCl and infect intestinal epithelium
Term
risk factor
Definition
a measure of the probability that damage to health will occur as a result of a given hazard, i.e. something that increases the risk of contracting a specific disease
Term
what are the risk factors for CHD
Definition
(lifestyle) 1. poor diet: high in saturated fat and salt. 2. smoking, lack of exercise, alcohol --> hypertension --> heart & vascular system damage
Term
Pathogen
Definition
a disease-causing agent
Term
e.g.s of pathogens
Definition
bacteria, fungi, virus or parasite (micro/macro e.g. tapeworm)
Term
e.g.s of viral diseases
Definition
chicken pox, small pox, polio, flu, measles, colds (most), AIDs
Term
e.g.s of fungal diseases
Definition
nearly all on body surface e.g. ringworm, athlete's foot, thrush (candida)
Term
e.g.s of bacterial diseases
Definition
cholera, TB, food poisoning (salmonella, E. Coli), MRSA
Term
in what ways do pathogens cause disease
Definition
1: production of toxins e.g. bacteria that causes tetanus produces toxins that block function of certain nerve cells which causes muscle spasms. 2: Cell damage e.g. physical damage, rupturing to release nutrients/proteins etc, digesting nutrients for own use (starvation -> death), replication inside cells --> lysis e.g. some viruses
Term
what is cancer
Definition
uncontrolled cell division
Term
risk factors for cancer
Definition
1. smoking - mouth, throat, lung 2. high UV exposure (i.e. sunlight) - skin 3. alcohol - many e.g. liver
Term
most effective way of reducing CHD & cancer risk factors
Definition
change of lifestyle
Term
difference between correlation and causal relationship
Definition
correlation - observed relationship between variables, not definitive. Causal relationship - overwhelming evidence from carefully designed experiments where variables can be controlled to prove a hypotheses about an observation e.g. 'smoking causes cancer'
Term
epidemiology
Definition
study of spread of disease & factors that influence its spread
Term
zoonosis
Definition
pathogens spend part of life-cycle in/on another species - e.g occasionally affect people
Term
opportunist infection
Definition
microbes that normally co-exist w/ host (e.g. skin, gut) enter through damaged/immunocompromised barrier and cause disease
Term
what are enzymes
Definition
enzymes are proteins which catalyse metabolic reactions e.g. digestion & respiration (growth & development). They have an active site with a specific shape complementary to their substrate. Their complex tertiary structure means they are highly specific
Term
how do enzymes speed up reactions
Definition
lower activation energy (amt energy, often heat, needed for rxn to start) so rxn can occur at a lower temperature
Term
Salivary glands
Definition
3 main pairs around mouth. Secrete saliva: (mucus, mineral salts & amylase: starch --> maltose) lubricates to aid swallowing
Term
Oesophagus
Definition
links mouth to stomach. Undergoes peristalsis and secretes mucus to lubricate bolus and trap pathogens
Term
Stomach
Definition
folded to increase SA, Sphincters (pyloric & gastrooesophageal) to control entrance & exit. Secretes gastric juice (HCl, pepsin [protease], mucus) + peristalsis (churning) breaks down food = chyme (low pH)
Term
Duodenum
Definition
first section of small intestine
Term
Pancreas
Definition
secretes pancreatic juice (amylase, trypsin, chymotrypsin) & sodium hydrogen carbonate which neutralises HCl
Term
Ileum
Definition
main section of small intestine. Undergoes peristalsis. High SA as folded into villi. Bile (detergent) & pancreatic juice further breaks down neutralised chyme e.g. into glucose, amino acids & fatty acids, which are then absorbed through villi (by diffusion, facilitated diffusion & active transport).
Term
Colon
Definition
Large intestine. Absorbs water, salt & minerals. High SA. Contains hugh diversity of anaerobic bacteria
Term
Rectum
Definition
Stores faeces prior to defacation
Term
test for proteins
Definition
Bieuret test: add few drops of NaOH (so alkaline). Add Copper(II) sulfate solution. Purple = present, Blue = absent.
Term
why do polymers in food need to be broken down
Definition
to be absorbed and assimilated into new products
Term
how are polymers in food broken down
Definition
insoluble in water so hydrolysed by digestive enzymes
Term
what bond is hydrolysed in carbohydrate digestion
Definition
glycosidic
Term
what bond is hydrolysed in protein digestion
Definition
peptide
Term
difference between different amino acids
Definition
different R functional groups
Term
how are amino acids joined together into polypeptides
Definition
condensation rxn - removal of water molecule btw hydroxyl of carboxylic acid of one and nitrogen of amine group of other (peptide bond)
Term
describe RoR vs [s] graph: unlimited enzyme
Definition
amount of substrate limits RoR, rate increases proportionally with [s] because always unoccupied active sites
Term
describe RoR vs [s] graph: fixed amount of enzyme
Definition
up to point of inflection, substrate concentration is limiting factor because there are unoccupied active sites. Beyond point of inflection, RoR is constant w/ increasing [s] because active sites are saturated.
Term
carbohydrase
Definition
catalyse carbohydrate hydrolysis
Term
protease
Definition
catalyse protein hydrolysis
Term
lipase
Definition
catalyse lipid hydrolysis
Term
what kinds of food are rich in proteins
Definition
chicken, eggs, nuts
Term
what kinds of food are rich in carbohydrates
Definition
pasta, potatoes, bread
Term
what is starch
Definition
composed of amylose and amylopectin which are both long chains of alpha glucose with glycosidic bonds between monomers, these are broken down in condensation reactions
Term
1st and 2nd stage of starch digestion
Definition
1st: starch --> maltose (salivery/pancreatic amylase). 2nd maltose --> alpha glucose monomers (intestinal epithelium maltase)
Term
test for starch
Definition
add iodine dissolved in potassium iodide solution. +ve: browny orange to blue-black
Term
alpha glucose
Definition
hexose, 6C (O atom in hexagon, 6th carbon on branch)
Term
what type of sugar is alpha glucose
Definition
hexose, 6C (O atom in hexagon, 6th carbon on branch)
Term
how does alpha glucose form di/polysaccharides
Definition
condensation reaction produces glycosidic bonds between 2 or more monomers
Term
salivary glands: enzyme(s), class, hydrolyses...
Definition
amylase (carbohydrase: starch --> maltose)
Term
stomach: enzyme(s), class, hydrolyses...
Definition
pepsin (protease: proteins --> peptides)
Term
pancreas: enzyme(s), class, hydrolyses...
Definition
amylase (carbohydrase: starch --> maltose), trypsin (protease: protein --> peptides), chymotrypsin (protease: protein --> peptides), carboxypeptidase (protease: peptides --> amino acids), lipase (lipase: lipids --> fatty acids + glycerol)
Term
ileum: enzyme(s), class, hydrolyses...
Definition
maltase (carbohydrase: maltose --> glucose), sucrase (carbohydrase: sucrose --> fructose + glucose), lactase (carbohydrase: lactose --> glucose + galactose), peptidase (protease: peptides --> amino acids)
Term
purpose of digestion
Definition
break down large molecules into smaller soluble molecules to be absorbed and assimilated
Term
monomers of carbohydrates
Definition
monosaccharides
Term
elements in monosaccharides
Definition
C, H, O
Term
monomers of proteins
Definition
amino acids
Term
elements in amino acids
Definition
C, H, O, N
Term
lactose intolerance
Definition
gene for lactase switched off (evolved away from cow's milk) so lactose can't be digested and absorbed. Lactose solute lowers water potential of lumen so water moves into lumen by osmosis. This: dilutes digestive enzymes so digestion is slower; dilutes digestive products so absorption is slower (nutrition less effective) - this is more acute in colon which is the site of water absorption --> diarrhea; lactose also feed anaerobic bacteria --> flatulence & stomach cramps. The patient should only drink lactose-free milk (lactose beads) or alternatives to milk
Term
non-competitive inhibition
Definition
non-competitive inhibitor binds elsewhere than active site. It changes tertiary protein structure and therefore shape of active site so substrate won't fit, so an increase of substrate concentration does not effect enzyme activity
Term
How does tertiary structure relate enzyme properties
Definition
Shape of active site is determined by tertiary structure which in turn is determined by primary protein structure. This means enzymes are very specific; only one shape of substrate is complementary to a.s. so catalyses 1 type of reaction. Tertiary structure can be altered by changes in temperature and pH, or primary structure (sequence of amino acids) changed by gene mutation --> no rxn.
Term
how do enzymes catalyse catabolic rxns
Definition
cata- - break down - substrate in active site puts strain on bonds so they break more easily
Term
how do enzymes catalyse anabolic rxns
Definition
substrate molecules held close together in active site, overcoming any repulsion so bond more easily
Term
what's the name for the substrate and enzyme when bound
Definition
ESC - enzyme-substrate complex
Term
what are reducing sugars? e.g.s
Definition
donate electrons. All monosaccharides, lactose and maltose
Term
test for reducing sugars
Definition
add benedict's reagent (blue). Heat. positive: brick red
Term
non-reducing sugars
Definition
boil w/ dil. HCl to break glycosidic bonds -> monosaccharides. Neutralise w/ NaOH. Perform Benedict's test
Term
lock and key model of enzyme action, evidence against, better model?
Definition
substrate complementary shape to a.s.. It's been observed that substrate and enzyme change shape when substrate binds. The Induced Fit Model explains how enzyme activity can be affected by variety of factors: the change of shape puts strain on bonds and lowers activation energy
Term
competitive inhibitors
Definition
similar molecular shape as substrate so competes for and blocks a.s. - degree of inhibition depends on relative concentrations of inhibitor + substrate. (Reversible - substrate has higher affinity for a.s. than inhibitor)
Term
4 types of protein
Definition
enzymes (often spherical - tight folding - often metabolic, digestive, synthetic roles), antibodies (involved in immune response. 2 light (short) + 2 heavy (long) polypeptide chains, variable regions - amino acid sequence varies greatly), transport proteins (in cell membranes. Hydrophobic + hydrophilic amino acids so folds into channel to transport molecules and ions), structural proteins (strong, long polypeptide chains w/ parallel + cross links e.g. keratin (hair & nails) collagen (connective tissues)
Term
how does pH influence enzyme activity
Definition
H (low pH) & OH (high pH) ions affect ionic and H bonds --> deactivation (change shape) --> denaturation. (in humans, optimum pH is around 7 except e.g. pepsin in stomach around pH 2)
Term
3 factors which affect rate of enzyme catalysed reactions
Definition
1) ratio + absolute concentration of enzyme/substrate 2) environmental: pH & temperature 3) inhibitors
Term
examples of enzyme inhibitors
Definition
some poisons e.g. cyanide (inhibits final enzyme of electron transport chain in mitochondria), some drugs e.g viagra, aspirin, penicillin
Term
how does temperature influence enzyme activity
Definition
higher temperatures - molecules vibrate more. Collision theory: higher k.e. --> more forceful + frequent collisions --> higher activity. Too high temperatures will break bonds in tertiary structure (H 1st) leading to deactivation and denaturation --> change in shape
Term
why put food in fridge
Definition
temperature below optimum for digestive enzymes
Term
how does enzyme increase rate of biological reactions?
Definition
lower activation energy (amt energy, often heat, needed for rxn to start) so rxn can occur at a lower temperature
Term
primary protein structure
Definition
specific sequence of amino acids
Term
secondary protein structure
Definition
polypeptide coils - amino acids form H-bonds w/ e/other - alpha helix or beta pleated sheet
Term
tertiary protein structure
Definition
further folding of secondary structure, disulfide bridges and ionic bonds form btw R groups, H-bonds. Single polypeptide forms a final, specific 3D structure
Term
quaternary protein structure
Definition
>1 polypeptide + prosthetic groups (e.g. haemoglobin, immunoglobulin, many enzymes, insulin, collagen)
Term
what does the specific shape of a protein determine
Definition
its function
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