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Gene Expression
May 21 Class 9
30
Biology
Undergraduate 2
05/21/2015

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Term

Describe the process of DNA relication on the leading and lagging strands. Include:

DNA Pol I

DNA Pol III

Helicase

Ligase

Primase

Single-stranded DNA binding protein

Topoisomerase

Definition
Term
When adding a nucleotide to a DNA replication, what is added?
Definition

Raw material = deoxynucleoside triphosphate (dNTP)

dATP

dTTP

dCTP

dGTP

Term
What is the byproduct of DNA Replication?
Definition
pyrophosphate (two phosphates linked together)
Term
What bonds are formed in DNA replication?
Definition
phosphodiester
Term
What is a phosphodiester bond?
Definition
Term
What happens when something goes wrong with DNA Replication?
Definition

Would create a mutation..

1)Contemporaneous with synthe sisi

DNA Pos 'proofread' taking incorrect bases back off

Term
What is profreading?
Definition
when DNA Pols take incorrect bases off
Term
In error correction, what two things must occur with synthesis?
Definition

Contempoaneous with synthesis

Subsequent to synthesis

 

Mismatches or damage cause kinks in DNA helix

When a kink is detecte. the offending DNA is removed, then replaced by Pol I and the gaps are glued together by ligase

Term
How does DNA replication differ in eukaryote?
Definition
  • Have multible linear chromosomes
  • DNA replication begins at multiple orgins of replication
  • It progesses outward in bothe directions- bidirectionally
  • Each replication fork of each replication bubble copies both strands
  • X

 

Term
Descibe how prokaryote process okazaki fragments vs eukaryotew
Definition

Pol I comes in and chews up primer in Prokaryotes

RNA primer is pealed off the template and clipped off. ligase seals the gap EUK

Term
What are potential problems at the end that eukaryotes have?
Definition

Eykaryotes have linear chromosomes

DNA polymerase needs to buold on an existing primer. so you can't replicate the very end- the chromosome would get shorter with each round of replication

Term
What is are telomeres?
Definition
Eukaryotic chromosomes have a reptitive sequence on each end that protects them from this progessive shortening through the action of the enzyme telomerase
Term
What is telomerase?
Definition

An enzyme made up of both protein and RNA (ribonucleoprotein) that carries its own template and this lets it add lost repeats back to the telomeres

telomerase becomes less active with age

Term
What effect does a small change in the DNA sequence have on phenotype?
Definition
Very dramatic
Term
What is the central dogma?
Definition
An understanding the way information flows, from DNA>RNA>Protein
Term
What is Transcription?
Definition
DNA to RNA
Term
What is translation?
Definition
RNA to Protein
Term
Describe the process of Transcription
Definition

(taking DNA letters to RNA letters)

RNA synthesis using DNA template

RNA polymerase uses one DNA strand as template to make complementary strand

makes RNA 5' to 3'

Term
What are the two types of DNA strands?
Definition
DNA template strand, DNA coding strand
Term
What happens with the two strands in DNA transcription?
Definition
DNA template strand separates from DNA coding strand. The DNA template strand then pairs with mRNA.
Term
What does the coding srand do in transcription?
Definition
nothing
Term
How is RNA transcribed?
Definition
5' to 3' using template strand as the template
Term
What has the same sequence as RNA?
Definition
The coding strand except t>u
Term
What are the three phases of transcription?
Definition

Initiation-start

Elongation-do it

Termination-finish

Term
What occurs during initiation?
Definition
  • Transcription factors bind DNA at specific sequences where RNA synthesis is to begin(promoter)
  • Bound factors load RNA polymerase
  • RNA polymerase/transcription factor complex melts the DNA
  • RNA polymerase starts making RNA (no primer is needed)
Term
What occurs during elongation?
Definition

RNA polymerase makes RNA

  • DNA template
  • Ribonucleoside trophosphate (not deoxyribose)

(NTPs vs dNTPs) and (U sub for T)

Term
What occurs in termination of Transcription
Definition
Disrupts transcription complex
Different between bacteria (x2) and eukaryotes
Term
What is the promoter?
Definition
what binds DNA where RNA synthesis is to begin
Term
What is/ what isn't needed in elongation of transcription?
Definition
No primase needed
No separate helicase needed
No SSB needed
Needs Topoisomerase
Term
Why isn't helicase needed in elongation of transcription?
Definition
polymerase works twice undoing itself
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