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biol112 exam 1 vocab
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317
Biology
Undergraduate 1
01/25/2012

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Term
cell
Definition
smallest unit with the capacity to live and reproduce
Term
emergent properties
Definition
characteristics that depend on the level of organization of matter, but do not exist at lower levels of organization
Term
unicellular organisms
Definition
individual consisting of a single cell
Term
multicellular organisms
Definition
individual consisting of interdependent cells
Term
population
Definition
all the individuals of a single species that live together in the same place and time
Term
biosphere
Definition
all regions of Earth's crust, waters, and atmosphere that sustain life
Term
deoxyribonucleic acid (DNA)
Definition
the large, double-stranded, helical molecule that contains the genetic material of all living organisms
Term
ribonucleic acid (RNA)
Definition
a polymer assembled from repeating nucleotide monomers in which the five-carbon sugar is ribose. Cellular RNAs include mRNA (which is translated to produce a polypeptide), tRNA (which brings an amino acid to the ribosome for assembly into a polypeptide), and rRNA (which is a structural component of ribosomes). The genetic material of some viruses is RNA.
Term
proteins
Definition
molecules that carry out most of the activities of life, including the synthesis of all other biological molecules. A protein consists of one or more polypeptides depending on the protein
Term
community
Definition
populations of all species that occupy the same area
Term
ecosystem
Definition
group of biological communities interacting with their shared physical environment
Term
metabolism
Definition
the biochemical reactions that allow a cell or organism to extract energy from its surroundings and use that energy to maintain itself, grow, and reproduce
Term
photosynthesis
Definition
the converstion of light energy to chemical energy in the form of sugar and other organic molecules
Term
cellular respiration
Definition
the process by which energy-rich molecules are broken down to produce energy in the form of ATP
Term
primary producers
Definition
an autotroph, usually a photosynthetic organism, a member of the first trophic level
Term
consumers
Definition
an organis that consumes other organisms in a community or ecosystem
Term
decomposers
Definition
a small organism, such as a bacterium or fungus, that feeds on the remains of dead organisms, breaking down complex biological molecules or structures into simpler raw materials
Term
homeostasis
Definition
a steady internal condition maintained by responses that compensate for changes in the external environment
Term
reproduction
Definition
the process in which parents produce offspring
Term
inheritance
Definition
the transmission of DNA (that is, genetic information) from one generation to the next
Term
development
Definition
a series of programmed changes encoded in DNA, through which a fertilized egg divides into many cells that ultimately are transformed into an adult, which is itself capable of reproduction
Term
life cycle
Definition
the sequential stages through which individuals develop, grow, maintain themselves, and reproduce
Term
biological evolution
Definition
the process by which some individuals in a population experience changes in their DNA and pass those modified instructions to their offspring
Term
artificial selection
Definition
selective breeding of organisms to ensure that certain desirable traits appear at higher frequency in successive generations
Term
natural selection
Definition
the evolutionary process by which alleles that increase the likelihood of survival and the reproductive output of the individuals that carry them become more common in subsequent generations
Term
genes
Definition
a unit containing the code for a protein molecule or one of its parts, or for functioning RNA molecules such as tRNA and rRNA
Term
mutations
Definition
a spontaneous and heritable change in DNA
Term
adaptations
Definition
characteristic that helps an organism survive longer or reproduce more under a particular set of environmental conditions
Term
genus
Definition
a Linnaean taxonomic category ranking below a family and above a species
Term
species
Definition
a group of populations in which the individuals are so closely related in structure, biochemistry, and behavior that they can successfully interbreed
Term
scientific name
Definition
a two-part name identifying the genus to which a species belongs and designating a particular species within that genus
Term
family
Definition
a Linnean taxonomic category that ranks below an order and above a genus
Term
order
Definition
a Linnean taxonomic category of organisms that ranks above a family and below a class
Term
class
Definition
a Linnaean taxonomic category that ranks below phylum and above order
Term
phylum
Definition
a major Linnean division of a kingdom, ranking above a class
Term
kingdom
Definition
a Linnean taxonomic category that ranks below a domain and above a phylum
Term
Domain (systematics)
Definition
in systematics, the highest taxonomic category; a group of cellular organisms with characteristics that set it apart as a major branch of the evolutionary tree
Term
phylogenetic trees
Definition
a branching diagram depicting the evolutionary relationships of groups of organisms
Term
prokaryotes
Definition
organism in which the DNA is suspended in the cell interior without separation from other cellular components by a discrete membrane
Term
eukaryotes
Definition
organism in which the DNA is enclosed in a nucleus
Term
organelles
Definition
the nucleus and other specialized internal structures and compartments of eukaryotic cells
Term
biological research
Definition
the collective effort of individuals who have worked to understand how living systems function
Term
basic research
Definition
research conducted to search for explanations about natural phenomena in order to satisfy curiosity and to advance collective knowledge of living systems
Term
applied research
Definition
research conducted with the goal of solving specific practical problems
Term
scientific method
Definition
an investigative approach in which scientists make observations about the natural world, develop working explanations about what they observe, and then test those explanations by collecting more information
Term
observational data
Definition
basic information on biological structures or the details of biological processes
Term
experimental data
Definition
information that describes the result of a careful manipulation of the system under study
Term
hypothesis
Definition
a tentative explanation for an observation, phenomenon, or scientific problem that can be tested by further investigation
Term
null hypothesis
Definition
a statement of what would be seen if the hypothesis being tested were wrong
Term
variables
Definition
an environmental factor that may difer among places or an organismal characteristic that may differ among individuals
Term
predictions
Definition
a statement about what the researcher expects to happen to one variable if another variable changes
Term
alternative hypotheses
Definition
an explanation of an observed phenomenon that is different from the explanation being tested
Term
control
Definition
treatment that tells what would be seen in the absence of the experimental manipulation
Term
experimental variable
Definition
the variable in a scientific study that is manipulated by the experimenter
Term
replicates
Definition
multiple subjects that receive either the same experimental treatment or the same control treatment
Term
model organisms
Definition
an organism with characteristics that make it a particularly useful subject of research because it is likely to produce results widely applicable to other organisms
Term
biotechnology
Definition
the manpulation of living organisms to produce useful products
Term
scientific theory
Definition
a broadly applicable idea or hypothesis that has been confirmed by every conceivable test
Term
bioremediation
Definition
applications of chemical and biological knowledge to decontaminate polluted environments
Term
element
Definition
a pure substance that cannot be broken down into simpler substances by ordinary chemical or physical techniques
Term
matter
Definition
anything that occupies space and has mass
Term
trace elements
Definition
an element that occurs in organisms in very small quantities (<0.01%)
Term
atoms
Definition
the smallest unit that retains the chemical and physical properties of an element
Term
molecules
Definition
a unit composed of atoms combined chemically in fixed numbers and ratios
Term
formula
Definition
the name of a molecule written in chemical shorthand
Term
compounds
Definition
a molecule whose component atoms are different
Term
atomic nucleus
Definition
the nucleus of an atom, containing protons and neutrons
Term
electrons
Definition
negatively charged particle outside the nucleus of an atom
Term
protons
Definition
positively charged particle in the nucleus of an atom
Term
atomic number
Definition
the number of protons in the nucleus of an atom
Term
neutrons
Definition
uncharged particle in the nucleus of an atom
Term
isotopes
Definition
a distinct form of the atoms of an element, with the same number of protons but different number of neutrons
Term
dalton
Definition
a standard unit of mass, about 1.66 x 10 ^-24 grams
Term
mass number
Definition
the total number of protons and neutrons in the atomic nucleus
Term
mass
Definition
the amount of matter in an object
Term
weight
Definition
a measure of the pull of gravity on an object
Term
radioactivity
Definition
the giving off of particles of matter and energy by decaying nuclei
Term
radioisotope
Definition
an unstable, radioactive isotope
Term
tracers
Definition
isotope used to label molecules so that they can be tracked as they pass through biochemical reactions
Term
orbital
Definition
the region of space where the elctron "lives" most of the time
Term
energy levels (shells)
Definition
regions of space within an atom where electrons are found
Term
valence electrons
Definition
an electron in the outermost energy level of an atom
Term
chemical bonds
Definition
link formed when atoms of reactive elements combine into molecules
Term
ionic bonds
Definition
bond that results from electrical attractions between atoms that have lost or gained electrons
Term
ions
Definition
a positively or negatively charged atom
Term
cation
Definition
a positively charged ion
Term
anion
Definition
a negatively charged ion
Term
covalent bonds
Definition
bond formed by electron sharing between atoms
Term
electronegativity
Definition
the measure of an atom's attraction for the electrons it shares in a chemical bond with another atom
Term
nonpolar covalent bonds
Definition
a bond in which electrons are shared equally
Term
polar covalent bonds
Definition
bond in which electrons are shared unequally
Term
polar associations
Definition
association that occurs when polar molecules attract and align themselves with other polar molecules and with charged ions and molecules
Term
nonpolar associations
Definition
association that occurs when nonpolar molecules clump together
Term
hydrophilic
Definition
in chemistry and biology, referring to polar molecules that associate readily with water
Term
hydrophobic
Definition
in chemistry and biology, referring to nonpolar substances that are excluded by water and other polar molecules
Term
hydrogen bond
Definition
noncovalent bond formed by unequal electron sharing between hydrogen atoms and oxygen, nitrogen, or sulfur atoms
Term
Van der Waals forces
Definition
weak molecular attractions over short distances
Term
reactants
Definition
the atoms or molecules entering a chemical reaction
Term
products
Definition
an atom or molecule leaving a chemical reaction
Term
chemical equations
Definition
a chemical reaction written in balanced form
Term
water lattice
Definition
an arrangement formed when a water molecule in liquid water establishes an average of 3.4 hydrogen bonds with its neighbors
Term
ice lattice
Definition
a rigid, crystalline structure formed when a water molecule in ice forms four hydrogen bonds with neighboring molecules
Term
specific heat
Definition
the amount of heat required to increase the temperature of a given quantity of water
Term
calories
Definition
the amount of heat required to raise 1g of water by 1 degree C, known as a "small" calorie
Term
Calorie
Definition
a unit equal to 1,000 small calories
Term
kilocalorie (kcal)
Definition
the scientific unit equivalent to a Calorie and equal to 1,000 small calories
Term
heat of vaporization
Definition
the heat required to give water molecules enough energy of motion to break loose from liquid water and form a gas
Term
cohesion
Definition
the high resistance of water molecules to separation
Term
adhesion
Definition
the adherence of molecules to the walls of conducting tubes, as in plants
Term
surface tension
Definition
the force that places surface water molecules under tension, making them more resistant to separation than the underlying water molecules
Term
bilayer
Definition
a membrane with two molecular layers
Term
hydration layer
Definition
a surface coat of water molecules that covers other polar and charged molecules and ions
Term
solution
Definition
substance formed when molecules and ions separate and are suspended individually, surrounded by water molecules
Term
solvent
Definition
the water in a solution in which the hydration layer prevents polar molecules or ions from reassociating
Term
solute
Definition
the molecules of a substance dissolved in water
Term
concentration
Definition
the number of molecules or ions of a substance in a unit volume of space
Term
atomic weight
Definition
the weight of an element in grams, equal to the mass number
Term
Avogadro's number
Definition
the number 6.022 x 10 ^23, derived by dividing the atomic weight of any element by the weight of an atom of that element
Term
molecular weight
Definition
the weight of a molecule in grams, equal to the total mass number of its atoms
Term
mole (mol)
Definition
amount of substance that contains as many atoms or molecules as there are atoms in exactly 12 g of carbon- 12, which is 6.022 x 10 ^23
Term
molarity (M)
Definition
the number of moles of a substance dissolved in 1 L of solution (moles per liter)
Term
dissociation
Definition
the separation of water to produce hydrogen ions and hydroxide ions
Term
reversible
Definition
the term indicating that a reaction may go from left to right or from right to left, depending on conditions
Term
acids
Definition
proton donor that releases H+ (and anions) when dissolved in water
Term
bases
Definition
proton acceptor that reduces the H+ concentration of a solution
Term
pH scale
Definition
the numerical scale used by scientists to measure acidity
Term
buffers
Definition
substanes that compensate for pH changes by absorbing or relasing H+
Term
organic molecules
Definition
molecule based on carbon
Term
inorganic molecules
Definition
molecule without carbon atoms in its structure
Term
functional groups
Definition
the atoms in reactive groups
Term
hydroxyl group
Definition
group consisting of an oxygen atom linked to a hydrogen atom on one side and to a carbon chain on the other side
Term
alchols
Definition
a molecule of the form R--OH in which R is a chain of one or more carbon atoms, each of which is linked to hydrogen atoms
Term
carbonyl group
Definition
the reactive part of aldehydes and ketones, consisting of an oxygen atom linked to a carbon atom by a double bond
Term
aldehyde
Definition
molecule in which the carbonyl group is linked to a carbon atom at the end of a carbon chain, along with a hydrogen atom
Term
ketone
Definition
molecule in which the carbonyl group is linked to a carbon atom in the interior of a carbon chain
Term
carboxyl group
Definition
the characgteristic functional group of organic acids, formed by the combination of carbonyl and hydroxyl groups
Term
organic acids
Definition
carboxylic acid; acid for which the characteristic functional group is a carboxyl group (-COOH)
Term
amino group
Definition
group that acts as an organic base, consisting of a nitrogen atom bonded on one side to two hydrogen atoms and on the other side to a carbon chain
Term
phosphate group
Definition
group consisting of a central phosphorous atom held in four linkages: two that bind -OH groups to the central phosphorous atom, a third that binds an oxygen atom to the central phosphorous atom, and a fourth that links the phosphate group to an oxygen atom
Term
sulfhydryl group
Definition
group that works as a molecular fastener, consisting of a sulfur atom linked on one side to a hydrogen atom and on the other side to a carbon chain
Term
disulfide linkage
Definition
linkage that occurs when two sulfhydryl groups interact during a linking reaction
Term
isomers
Definition
two or more molecules with the same chemical formula but different molecular structures
Term
enantiomers (optical isomers)
Definition
isomers that are mirror images of each other
Term
structural isomers
Definition
two molecules with the same chemical formula but atoms that are arranged in different ways
Term
dehydration synthesis reaction / condensation reaction
Definition
reaction during which the components of a water molecule are removed, usually as part of the assembly of a larger molecules from smaller subunits
Term
hydrolosis
Definition
reaction in which the components of a water molecule are added to function groups as molecules are broken into smaller subunits
Term
glycogen
Definition
energy-providing carbohydrates stored in animal cells
Term
starch
Definition
a storage polysaccharide in plants consisting of branched or unbranched chains of glucose subunits
Term
cellulose
Definition
one of the primary constituents of plant cell walls, formed by chains of carbohydrate subunits
Term
monosaccharides
Definition
the smallest carbohydrates, containing three to seven carbon atoms
Term
polysaccharides
Definition
chain with more than 10 linked monosaccharide subunits
Term
glycosidic bonds
Definition
bond formed by the linkage of two alpha-glucose molecules with oxygen as bridge between a carbon of the first glucose and a carbon of the second glucose unit
Term
neutral lipids
Definition
energy-storing molecule consisting of a glycerol backbone and three fatty acid chains
Term
oils
Definition
neutral lipid that is liquid at biological temperatures
Term
fats
Definition
neutral lipid that is semisolid at biological temperatures
Term
fatty acid
Definition
one of two components of a neutral lipid, containing a single hydrocarbon chain with a carboxyl group linked at one end
Term
saturated
Definition
fatty acid with only single bonds linking the carbon atoms
Term
unsaturated
Definition
fatty acid with one or more double bonds linking the carbons
Term
monounsaturated
Definition
fatty acids with one double bond
Term
polyunsaturated
Definition
fatty acid with more than one double bond
Term
triglyceride
Definition
a nonpolar compound produced when a fatty acid binds by a dehydration synthesis reaction at each of glycerol's three --OH bearing sites
Term
waxes
Definition
a substance insoluble in water that is formed when fatty acids combine with long-chain alcohols or hydrocarbon structures
Term
phospholipids
Definition
a phosophate-containing lipid
Term
steroids
Definition
a type of lipid derived from cholesterol
Term
sterols
Definition
steroid with a single polar --OH group linked to one end of the ring framework and a complex, nonpolar hydrocarbon chain at the other end
Term
cholesterol
Definition
the predominant sterol of animal cell membranes
Term
phytosterols
Definition
a sterol that occurs in plant cell membranes
Term
enzymes
Definition
protein that accelerates the rate of a cellular reaction
Term
amino acid
Definition
a molecule that contains both an amino and a carboxyl group
Term
peptide bond
Definition
a link formed by a dehyrdation synthesis reaction between the --NH3 group of one amino acid and the --COOH group of a second
Term
N-terminal end
Definition
the end of a polypeptide chain with an --NH3+ group
Term
C-terminal end
Definition
the end of an amino acid chain with a -COO- group
Term
polypeptide
Definition
the chain of amino acids formed by sequential peptide bonds
Term
primary structure
Definition
the sequence of amino acids in a protein
Term
secondary structure
Definition
regions of alpha helix, beta strand, or random coil in a polypeptide chain
Term
tertiary structure
Definition
the overall three dimensional folding of a polypeptide chain (globular)
Term
quaternary structure
Definition
the arrangement of polypeptide chains in a protein that contains more than one chain
Term
alpha helix
Definition
a type of secondary structure of a polypeptide in which the amino acid chain is twisted into a regular, right-hand spiral
Term
beta sheet (pleated sheet)
Definition
a type of secondary structure in a polypeptide in which the amino acid chain zigzags in a flat plane to form a beta strand, and beta strands then align side by side in the same or opposite direction
Term
random coil
Definition
an arrangement of the amino acid chain providing flexible regions that allow sections of the chain to bend
Term
conformation
Definition
the overall 3D shape of a protein
Term
denaturation
Definition
a loss of both the structure and function of a protein due to extreme conditions that unfold it from its normal conformation
Term
renaturation
Definition
the reformation of a denatured protein into its folded, functional state
Term
chaperone proteins (chaperonins)
Definition
"guide" protein that binds temporarily with newly synthesized proteins, directing their conformation toward the correc tertiary structure and inhibiting incorrect arrangements as the new proteins fold
Term
conformational changes
Definition
alteration in the 3D shape of a protein
Term
domains
Definition
in protein structure a distinct, large, structural subdivision produced in many proteins by the folding of the amino acid chain
Term
motifs
Definition
a highly specialized region in a protein produced by the 3D arrangement of amino acid chains within and between domains
Term
nucleotide
Definition
the monomer of nucleic acids consisting of a 5 carbon sugar, a nitrogenous base, and a phosphate
Term
nitrogenous base
Definition
a nitrogen-containing molecule with the properties of a base
Term
pyrimidines
Definition
a type of nitrogenous base with one carbon-nitrogen ring
Term
purines
Definition
a type of nitrogenous base with two carbon-nitrogen rings
Term
deoxyribose
Definition
a 5-carbon sugar to which a nitrogenous base and a phosphate group link covalently in a nucleotide of DNA
Term
ribose
Definition
a five carbon sugar to which the nitrogenous bases in nucleotides link covalently
Term
deoxyribonucleotides
Definition
nucelotide containing deoxyribose as the sugar; components of DNA
Term
ribonucleotides
Definition
nucleotide containing ribose as the sugar; ribonucleotides are components of RNA
Term
nucleoside
Definition
chemical structure containing only a nitrogenous base and a five carbon sugar
Term
phosphodiester bond
Definition
the linkage of nucleotides in polynucleotide chains by a bridging phosphate group between the 5' carbon of one sugar and the 3' carbon of the next sugar in line
Term
double helix
Definition
two nucleotide chains wrapped around each other in a spiral
Term
template
Definition
a nucleotide chain used in DNA replication for the assembly of a complementary chain
Term
cell theory
Definition
three generalizations yielded by microscopic observations: all organisms are composed of one or more cells; the cell is the smallest unit that has the properties of life; and cells arise only from the growth and division of preexisting cells
Term
microscopy
Definition
technique for producing visible images of objects that are too small to be seen by the human eye
Term
microscope
Definition
instrument of microscopy with different magnifications and resolutions of specimens
Term
light microscopes
Definition
microscope that uses light to illuminate the specimen
Term
electron microscopes
Definition
microscope that uses electrons to illuminate the specimen
Term
magnifiction
Definition
the ratio of an object as viewed to its real size
Term
resolution
Definition
the minimum distance two points in a specimen can be separated and still be seen as two points
Term
plasma membrane
Definition
the outer limit of the cytoplasm responsible for the regulation of substances moving into and out of the cells
Term
cytoplasm
Definition
all the parts of the cell that surround the central nucelus (eukaryotes) or nucleoid region (prokaryotes)
Term
organelles
Definition
the nucleus and other specialized internal structures and copartments of eukaryotic cells
Term
cytosol
Definition
aqueous solution in the cytoplasm containing ions and various organic molecules
Term
cytoskeleton
Definition
the interconnected system of protein fibers and tubes that extends throughout the cytoplasm of a eukaryotic cell
Term
nucleoid
Definition
the central region of a prokaryotic cell with no boundary membrane separating it from the cytoplasm, where DNA replication and RNA transcription occur
Term
nucleus
Definition
the central region of eukaryotic cells, separated by membranes from the surrounding cytoplasm, where DNA replication and messenger RNA transcription ocur
Term
prokaryotic chromosome
Definition
a single, typically circular DNA molecule
Term
ribosomes
Definition
a ribonuceloprotein particle that carries out protein synthesis by translating mRNA into chains of amino acids
Term
cell wall
Definition
a rigid external layer of material surrounding the plasma membrane of cells in plants, fungi, bacteria, and some protists, providing cell protection and support
Term
glycocalyx
Definition
a carbohydrate coat covering the cell surface
Term
slime layer
Definition
a coat typically composed of polysaccahrides that is loosely associated with bacterial cells
Term
capsule
Definition
an external layer of sticky or slimy polysaccharides coating the cell wall in many prokaryotes
Term
flagellum (pl flagella)
Definition
a long, threadlike, cellular appendage responsible for movement; found in both prokaryotes and eukaryotes, but with different structures and modes of locomotion
Term
nuclear envelope
Definition
in eukaryotes, membranes separating the nucleus from the cytoplasm
Term
nuclear pore complex
Definition
a large, octagonally symmetrical, clindrical structure that functions to exchange molecules between the nucleus and cytoplasm and prevents the transport of material not meant to cross the nuclear membrane. A nuclear pore -- a channel through the complex -- is the path for the exchange of molecules
Term
nuclear localization signal
Definition
a short amino acid sequence in a protein that directs the protein to the nucleus
Term
nucleoplasm
Definition
the liquid or semiliquid substance within the nucleus
Term
chromatin
Definition
any assemblage of eukaryotic nuclear DNA molecules and their associated proteins
Term
eukaryotic chromosome
Definition
a DNA molecule, with its associated proteins, in the nucleus of a eukaryotic cell
Term
nucleoli
Definition
the nuclear site of rRNA transcription, processing, and ribosome assembly in eukaryotes
Term
endomembrane system
Definition
in eukaryotes, a collection of interrelated internal membranous sacs that divide a cell into functional and structural compartments
Term
vesicles
Definition
a small, membrane-bound compartment that transfers substances between parts of the endomembrane system
Term
endoplasmic reticulum (ER)
Definition
in eukaryotes, an extensive interconnected network of cisternae that is responsible for the synthesis, transport, and initial modification of proteins and lipids
Term
cisternae
Definition
membranous channels and vesicles that make up the endoplasmic reticulum
Term
ER lumen
Definition
the enclosed space surrounded by the cisterna
Term
rough ER
Definition
endoplasmic reticulum with many ribosomes studding its outer surface
Term
smooth ER
Definition
endoplasmic reticulum with no ribosomes attached to its membrane surfaces; has various functions, including synthesis of lipids that become part of cell membranes
Term
Golgi complex
Definition
in eukaryotes, the organelle responsible for the final modification, sorting, and distribution of proteins and lipids
Term
secretory vesicles
Definition
vesicles that transport proteins to the plasma membrane
Term
exocytosis
Definition
in eukaryotes, the process by which a secretory vesicle fuses with the plasma membrane and releases the vesicle contents to the exterior
Term
endocytic vesicle
Definition
vesicle that acarries proteins and other molecules from the plasma membrane to destinations within the cell
Term
lysosomes
Definition
membrane-bound vesicle containg hydrolytic enzymes for the digestion of many complex molecules
Term
phagocytosis
Definition
process in which some types of cells engulf bacteria or other cellular debris to break them down
Term
mitochondria
Definition
membrane-bound organelles responsible for synthesis of most of the ATP in eukaryotic cells
Term
outer mitochondrial membrane
Definition
the smooth membrane covering the outside of a mitochondrion
Term
inner mitochondrial membrane
Definition
membrane surrounding the mitochondrial matrix
Term
cristae
Definition
fold that expands the surface area of the inner mitchondrial membrane
Term
mitochondrial matrix
Definition
the innermost compartment of mitochondrion
Term
microbodies
Definition
small, membrane-bound organelle that caries out vital reactions linking metabolic bathways
Term
peroxisomes
Definition
microbody that produces hydrogen peroxide as a by product
Term
microtubules
Definition
a cytoskeletal component formed by the polymerization of tubulin into rigid, hollow rods about 25 nm in diameter
Term
cell center / centrosome
Definition
the main microtubule organizing center of a cell, which organizes the microtubule cytoskeleton during interphase and positions many of the cytoplasmic organelles
Term
centrioles
Definition
a cylindrical structure consisting of nine triplets of microtubules in the centrosomes of most animal cells
Term
intermediate filaments
Definition
a cytoskeletal filament about 10 nm in diameter that provides mechanical strength to cells in tissues
Term
microfilaments
Definition
a cytoskeletal filament composed of actin
Term
basal body
Definition
structure that anchors cilia and flagella to the surface of a cell
Term
chloroplasts
Definition
the site of photosynthesis in plant cells
Term
plastids
Definition
a family of plant organelles that includes chloroplasts, amyloplasts, and chromoplasts
Term
amyloplasts
Definition
colorless plastid that stores starch in plants
Term
chromoplasts
Definition
plastid containing red and yellow pigments
Term
outer boundary membrane
Definition
a smooth membrane that surrounds a chloroplast, enclosing the stroma
Term
inner boundary membrane
Definition
membrane lying just inside the outer boundary membrane of a chloroplast, enclosing the stroma
Term
granum (pl. grana)
Definition
structure in the chloroplasts of higher plants formed by thylakoids stacked one on top of another
Term
central vacuoles
Definition
a large, water-filled organelle in plant cells that maintains the turgor of the cell and controls movement of molecules between the cytosol and sap
Term
tonoplast
Definition
the membrane that surround the central vacuole in a plant cell
Term
primary cell wall
Definition
the initial cell wall laid down by a plant cell
Term
secondary cell wall
Definition
a layer added to the cell wall of plants that is more rigid and may become many times thicker than the primary cell wall
Term
plasmodesma (pl. plasmodesmata)
Definition
a minute channel that perforates a cell wall and contains extensions of the cytoplasm that directly connect adjacent plant cells
Term
cell adhesion molecules
Definition
a cell surface protein responsible for selectively binding cells together
Term
extracellular matrix (ECM)
Definition
a molecular system that supports and protects cells and provides mechanical linkages
Term
anchoring junctions
Definition
cell junction that forms belts that run entirely around cells, "welding" adjacent cells together
Term
desmosomes
Definition
anchoring junction for which microfilaments anchor the junction in the underlying cytoplasm
Term
adherens junctions
Definition
animal cell junctions in which intermediate filaments are the anchoring cytoskeletal component
Term
tight junctions
Definition
region of tight connection between membranes of adjacent cells
Term
gap junctions
Definition
junction that opens direct channels allowing ions and small molecules to pass directly from one cell to another
Term
plasma membrane
Definition
the outer limit of the cytoplasm responsible for the regulation of substances moving into and out of cells
Term
cholesterol
Definition
the predominant sterol of animal cell membranes
Term
transport proteins
Definition
a protein embedded in the cell membrane that forms a channel allowing selected polar molecules and ions to pass across the membrane
Term
recognition proteins
Definition
protein in the plasma membrane that identifies a cell as part of the same individual or as foreign
Term
receptor proteins
Definition
protein that recognizes and binds molecules from other cells that act as chemical signals
Term
cell adhesion proteins
Definition
protein that binds cells together by recognizing and binding receptors or chemical groups on other cells or on the extracellular matrix
Term
glycolipids
Definition
a lipid molecule with carbohydrate groups attached
Term
glycoproteins
Definition
a protein with carbohydrate groups attached
Term
fluid mosaic model
Definition
model proposing that the membrane consists of a fluid phospholipid bilayer in which proteins are embedded and float freely
Term
integral proteins
Definition
protein embedded in a phospholipid bilayer
Term
peripheral proteins
Definition
proteins held to membrane surfaces by noncovalent bonds formed with the polar parts of integral membrane proteins or membrane lipids
Term
freeze-fracture technique
Definition
technique in which experimenters freeze a block of cells rapidly, then fracture the block to split the lipid bilayer and expose the hydrophobic membrane interior
Term
transport
Definition
the controlled movement of ions and molecules from one side of a membrane to the other
Term
passive transport
Definition
the transport of substances across cell membranes without expenditure of energy, as in diffusion
Term
active transport
Definition
the mechanism by which ions and molecules move against the concentration gradient across a membrane, from the side with the lower concentration to the side with the higher concentration
Term
diffusion
Definition
the net movement of ions or molecules from a region of higher concentration to a region of lower concentration
Term
concentration gradient
Definition
the concentration difference that drives diffusion
Term
selectively permeable
Definition
membranes that selectively allow, impede, or block the passage of atoms and molecules
Term
simple diffusion
Definition
mechanism by which certain small substances diffuse through the lipid part of a biological membrane
Term
facilitated diffusion
Definition
mechanism by which polar and charged molecules diffuse across membranes with the help of transport proteins
Term
channel proteins
Definition
transport protein that forms a hydrophilic channel in a cell membrane through which water, ions, or other molecules can pass, depending on the protein
Term
aquaporins
Definition
a specialized protein channel that facilitates diffusion of water through cell membranes
Term
gated channels
Definition
ion transporter in a membrane that switches between open, closed, or intermediate states
Term
carrier proteins
Definition
transport protein that binds a specific single solute and transports it across the lipid bilayer
Term
osmosis
Definition
the passive transport of water across a selectively permeable membrane in response to solute concentration gradients, a pressure gradient, or both
Term
osmotic pressure
Definition
a state of dynamic equilibrium in which the pressure of the solution on one side of a selectively permeable membrane exactly balances the tendency of water molecules to diffuse passively from the other side of the membrane due to a concentration gradient
Term
hypotonic
Definition
solution containing dissolved substances at lower concentrations than the cells it surrounds
Term
turgor pressure
Definition
the internal hydrostatic pressure within plant cells
Term
hypertonic
Definition
solution containing dissolved substances at higher concentrations than the cells it surrounds
Term
plasmolysis
Definition
condition due to outward osmotic movement of water, in which plant cells shrink so much that they retract from their walls
Term
isotonic
Definition
equal concentration of water inside and outside cells
Term
membrane potential
Definition
an electrical voltage that measures the potential inside a cell membrane relative to the fluid just outside; it is negative under resting conditions and becomes positive during an action potential
Term
primary active transport
Definition
transport in which the same protein that transports a substances also hydrolyzes ATP to power the transport directly
Term
secondary active transport
Definition
transport indirectly driven by ATP hydrolysis
Term
H+ pumps / proton pumps
Definition
pump that moves hydrogen ions across membranes and pushes hydrogen ions across the plasma membrane from the cytoplasm to the cell exterior
Term
Ca 2+ pump (calcium pump)
Definition
pump that pushes Ca 2+ from the cytoplasm to the cell exterior, and also from the cytosol into the vesicles of the endoplasmic reticulum
Term
Na+/K+ pump (sodium-potassium pump or Na+/K+-ATPase)
Definition
pump that pushes 3 Na+ out of the cell and 2 K+ into the cell in the same pumping cycle
Term
electrochemical gradient
Definition
a difference in chemical concentration and electric potential across a membrane
Term
symport (cotransport)
Definition
the transport of two molecules in the same direction across a membrane
Term
antiport (exchange diffusion)
Definition
a secondary active transport mechanism in which a molecule moves through a membrane channel into a cell and powers the active transport of a second molecule out of the cell
Term
bulk-phase endocytosis (pinocytosis)
Definition
mechanism by which extracellular water is taken into a ell together with any molecules that happen to be in solution in the water
Term
receptor-mediated endocytosis
Definition
the selective uptake of macromolecules that bind to cell surface receptors concentrated in clathrin-coated pits
Term
coated pit
Definition
a depression in the plasma memebrane the contains receptors for macromolecules to be taken up by endocytosis
Term
clathrin
Definition
the network of proteins that coat and reinforce the cytoplasmic surface of cell membranes
Term
phagocytosis
Definition
process in which some types of cells engulf bacteria or other cellular debris to break them down
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