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BIOL 101
Test 3
120
Biology
Undergraduate 1
04/19/2009

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Term
Carolus Linnaeus
Definition
contributed the 2 part latin species name we still use today. While he believed each species was created by God, he saw that they could be grouped in certain ways by similarities.
Term
Count Buffon
Definition
stated many ideas about evolution (like species change over time) but in response to the church: took it all back
Term
Baron Georges Cuvier
Definition
he believed that life had existed for much, much longer than a literal reading of the creation story in Genesis- how did he explain this?
Theory of catastrophism --> species can become extinct
Term
Sir Charles Lyell
Definition
He wrote “Principles of Geology” which REALLY inspired Darwin on his Beagle tour. What did Lyell think about the earth?
Gradual change shaped the earth --> earth is much older than 6,000 years
Term
Jean-Baptiste Lamarck
Definition
Believed species changed over time. Most known for his (incorrect) theory, inheritance of acquired characteristics. Example of his theory: a human gets buff so then his child would be buff too WRONG
Term
Thomas Robert Malthus
Definition
economist who wrote, “Essay on the Principle of Population” which was a major inspiration to Darwin. Basically, he concluded that poverty, famine, war, disease were all population checks on the human population because the population could not grow exponentially and compete for limited resources
Term
Alfred Wallace
Definition
Was a land surveyor working in present day Indonesia and independently came up with the same ideas as Darwin
Term
super fecundity
Definition
The fact that species tend to over reproduce.
Term
modern synthesis
Definition
combines the ideas of Darwin and Mendel. It recognizes the processes of microevolution. It also recognizes that 'traits' were passed on by genes.
Term
Hardy-Weinberg model of a non-evolving population
Definition
a.k.a Genetic Equilibrium. Says that sexual reproduction alone does not lead to microevolution. S population's allele frequencies don't change when there is no mutation, the population is infinitely large and isolated from others of the species, mating is random with respect to the alleles of interest and all individuals survive and reproduce sexually.
Term
trait equation
Definition

p=dominant q=recessive trait

p^2 + 2pq + q^2 = 1

p+q=1.

Term
directional selection
Definition
When allele frequencies, underlying a range of variation, shift in a consistent direction, in response to a change in the environment.
Term
Stabilizing selection
Definition
When intermediate phenotypes are favored and extreme phenotypes at

both ends of the range of variation are eliminated
Term
disruptive selection
Definition
When intermediate phenotypes are selected against and extreme phenotypes are favored
Term
sexual selection
Definition
When a phenotype that gives an individual an advantage at reproductive success is favored
Term
balancing selection
Definition
When two or more alleles are maintained at a frequency of greater than 1% over the generation, which tends to favor heterozygotes
Term
Genetic drift
Definition
change in gene pool of a small population due to change and not selection
Term
Bottleneck effect
Definition
a drastic reduction in population size because of some random event. Leads to a decrease in variety of genes.
Term
Founder effect
Definition
colonization of a new location by only a few individuals. Leads to a decrease in genetic diversity.
Term
Ernst Mayr’s Biological Species Concept
Definition
a group of populations whose
individuals have the potential to interbreed and produce fertile offspring
Term
Morphological
Definition
Compare species based on similarity of structure
Term
Genealogical
Definition
tell between species based on similarity of genes
Term
Ecological
Definition
tell species apart by their role in the environment.
Term
5 pre-zygotic barriers
Definition
temporal isolation (individual or the gametes are not around the same time to mate)
ecological isolation (organisms are not in the same place)
behavioral isolation (no sexual attraction)
mechanical isolation (reproductive parts don't fit together)
gamete mortality (successful copulation but no fertilization)
Term
Post-zygotic Barriers
Definition
a.Hybrid inviability- don’t develop or are frail offspring b.Hybrid sterility- hybrids (offspring between 2 species) are sterile
Term
Allopatric Speciation
Definition
Geographical barriers is what stops gene flow.
Term
Divergence
Definition
2 species coming from the same ancestral species
Term
adaptive radiation
Definition
A burst of divergences from a single ancestor that leads to many new species each adapted to a new habitat or using new resources
Term
Sympatric Speciation
Definition
No geographical barries, but gene flow stops anyway.
1. Animals – rarely happens and scientists don’t know how it happens, the only examples are fish species in crater lakes in Africa

2. Plants- can become reproductively isolated in one generation due to: errors in meiosis --> polyploidly (3n, 4n, 5n)
Term
Systematics
Definition
the study of biological diversity. Composed of phylogeny and taxonomy.
Term
phylogeny
Definition
evolutionary history (and relationships) of a group of organisms
Term
taxonomy
Definition
The naming and classification of species and groups of species
Term
photoautotroph
Definition
Get energy from sunlight, carbon from CO2. Ex: bacteria, some protists, all plants.
Term
chemoautotroph
Definition
likely the first form of life because the photosynthethic reactions require such complex set of enzymes and reactions. Get energy from inorganic chemicals (such as iron and sulfur).Ex: ancient bacteria
Term
photoheterotroph
Definition
Get energy from sunlight, and carbon from organic molecules (glucose). Ex: bacteria
Term
chemoheterotroph
Definition
Get energy/carbon from organic molecules (glucose). Ex: bacteria, some protists, all animals, all fungi.
Term
The first life forms were..
Definition
prokaryotes; kingdoms bacteria and archae. Had asexual reproduction, so genetic variaton only came from mutation. Mutation is caused by errors in DNA replication.
Term
Species classification
Definition
Domain --> Kingdom --> Phylum --> Class --> Order --> Family --> Genus --> Species
Term
Forms of DNA transfer
Definition
transformation- Taking up of DNA from surrounding fluid
transduction- A phage transfers a piece of DNA from previous host cell into a new host cell
conjugation- Direct transfer of replicated DNA from one cell to another
Term
Endosymbiosis Theory
Definition
Proposed by: Lynn Margulis. Explains how prokaryotes evolved into eukaryotes. Cyanobacteria turned into chloroplasts. An aerobic proteobacteria turned into mitochondria. Both organelles have their own DNA, separate from nucleus. They also divide independently of cell cycle. Also, they have inner cell membranes, similar in composition to prokaryotic membranes. Jeon Kwang experimented with amoebas that engulfed bacteria and became symbiotic.
Term
Protista
Definition
the first eukaryote kingdom. Its ancestors were prokaryotes. Its decendants include fungi, plants, animals. They are eukaryotic, multicellular and unicellular, aerobic/anaerobic respiration, and heterotropic nutrition and autotrophic nutrition. Ex:paramecium, amoebas, diatoms, algae
Term
Fungi
Definition
Evolved from protists. Are eukaryotic, multicellular and single celled, aerobic and anaerobic respiration, heterotropic nutrition. Ex: shrooms and yeast.
Term
Plants
Definition
Photosynthesis can occur at either the leaves or stems. They absorb the food through the roots with help of mycorrhizae (a fungal symbiont; plant provides sugars to the fungus for nutrition)The roots also hold the plant up. They reproduce by- gametes kept moist (and protected) in a jacket of cells around the gametes; male gametes (sperm that develop from pollen) are dispersed by: wind, water, animals. They are embryophytes, meaning that the embryo begins development: attached to parent plant (helps survival). To transport they use a. xylem – form rigid tubes that transport H2O and minerals from roots to stems/leaves
b. phloem – transports sugars throughout plant because photosynthesis does not occur in all parts
Support to stay upright in air– cell wall made of lignin (primarily found in xylem).
Term
Bryophytes
Definition
Plants with no vascular tissue (therefore, they lack internal support and must live in moist environments for water absorption). They have a cuticle to prevent water loss. Jacket of cells protect gametes
they are embryophytes. Sperm require water for dispersal. Advantage:do not need to be immersed in H2O at all times because of the cuticle (although they require moisture).
Term
Seedless vascular plants
Definition
Additional property (compared to bryophytes): xylem (lignin) & phloem --> plants can grow tall. Ex: Ferns.
Term
Gymnosperms
Definition
“naked seed”. Additional properties (compared to seedless vascular plants)
a. Sperm dispersal – as pollen (carried by wind)
b. Have seeds (embryo packaged with nourishment and a tough protective coating)2. Example: conifers
3. Evolutionary advantages
a. Reproduction not dependent on H2O
b. Fertilization occurs in a protective chamber called the ovule --> seed
c. Embryos begin life in a chamber called the seed which provides: nutrition and protection
d. Conifers - could survive cold temperatures after the Carboniferous period, conifers –keep leaves all year (maximize a short growing season), needles don’t hold snow, trees don’t break with weight of snow.
Term
Angiosperms
Definition
seeded vascular flowering plants 1. Additional properties (compared to gymnopserms) a. Have seeds that develop in protective chambers = fruits b. flowers (sexual reproductive structures) produced to attract pollinators 2.Examples: apple trees, dandelions. 90% of plant species today are angiosperms 3. Evolutionary advantages – a. targeted pollinators – no longer random wind dispersal b. wide dispersal of seeds
Term
Animals
Definition
evolved from protists. They are multicellular chemohetrotrophic eukaryotes that obtain nutrition by ingestion. Cells lack cell waslls. Most are motile (which requires basic muscle and nerve cells). Most are diploid. Most reproduce sexually. Develop:
a. zygote
b. Blastula- hollow balls of cells
c. Gastrula- 1. ectoderm – outer--> skin and nerves
2. endoderm – inner -->digestive tract
3. mesoderm – middle--> muscles, blood, bone, reproductive and urinary organs (seen later in evolution)
d. maybe become immature adult stage, like larva.
e. Adult
Term
Phylum Porifera
Definition
Sponges. No true tissues or organs. Two cell types-
a. collar cells are inner flagellated cells that move water though the body and phagocytose food
b. amoeboid cells- produce skeletal fibers (one defense against predators)
Can't move and have no symmetry or digestive cavity.
Term
phylum cnidaria
Definition
have 2 true tissue layers that form during development from the endoderm (inner epithelium) and ectoderm (outer epithelium). No organs. Radial symmetry. Some can move, so they have smple nerve and muscle cells. Have nematocysts – “stinging” capsules with toxins and barbs useful for capture prey and defense. They have mouths, but no anus. Example organisms: corals, anemones, hydras (all polyp), jellyfish (medusa).
Term
Phylum Platyhelminthes
Definition
Flatworms. They are protosome (mouth first). They have bilateral symmetry. tissues form in three layers (endoderm, enctoderm and mesoderm). Simple organs. Three groups of diversity
1. free-living Planarians 2. Flukes (parasitic) 3. Tapeworms (parasitic)
Have incomplete digestive cavity.
Term
cephalization
Definition
formation of head and tail.
Term
Phylum annelida
Definition
Protosome. They have bilateral symmetry with a segmented body. Complete digestive tract(mouth and anus). have coelom that is completely lined with tissue derived from mesoderm that becomes the peritoneum. The coelom helps absorb shock and it serves as a hydroskeleton, since it is filled with fluid. Systems:Circulatory , reproductive, digestive, nervous, excretory. Ex: Earthworms, Leeches
Term
phylum mollusca
Definition
bilateral, non-segmented symmetry. Complete digestive cavity. They have organ systems, including very good respiratory and circulatory. Unique body structure seen in many members:
a. Mantle – fold of tissue that extends from the body mass to drape over body—secretes a shell in some
b. Radula – a rasping organ used to scrape food.
Ex:
1. Gastropods – snails, slugs
2. Bivalves – mussels, clams, oysters 3. Cephalopods – squids, octopus, cuttlefish
Term
Phylum Nematoda
Definition
Roundworms. Protosomes. They have bilateral symmetry, complete digestive cavity. Have pseudocoelom(not entirely lined by mesoderm). have nervous, reproductive systems. No circulatory or respiratory systems. most members contain a flexible cuticle that sheds as it grows. 1. Most are free-living soil dwellers
2. Hookworms – Ascaris (parasitic)
3. Heartworm (parasitic)
Term
phylum arthropoda
Definition
most # of species. Protosome. bilateral symmetry with specialized segmentation head, abdomen, thorax. Complete digestive cavity. reduced coelom. Open circulatory system, specialized sensory and respiratory stucture. They have
a. jointed appendages – allows for various movements
b. exoskeleton – made of chitin
1. Crustaceans – lobsters, crayfish, shrimp, barnacles
2. Arachnids – spiders, mites, scorpions, ticks
3. Centipedes and Millipedes
4. Insects (the only winged inertebrates)
Term
Phylum Echinodermata
Definition
spiny skin. Deuterostome (mouth second). Adults have radial symmetry without segmentation, while larvae usually are bilateral without segmentation. Have a coelom and complete digestive cavity. have digestive, reproductive, excretory and water vascular systems. Have tube feet. Ex: sand dollar, sea star
Term
phylum chordata
Definition
Deuterostome. Has bilateral symmetry with segmentation(at stage1). Complete digestive cavity, coelom, with highly developed organ systems. Have:
1.dorsal, hollow nerve tube
2.notochord – flexible, supportive rod located between the digestive tube and nerve cord
3. pharyngeal slits – gill-like structures
4. muscular tail – posterior to anus
Ex:
1. lancelet – marine species, have all 4 previously described characteristics as adults
2. tunicates – “sea squirts”, exhibit all 4 as larva
3. vertebrates – segmented backbone
Term
Vertebrate
Definition
subphylum of chordata. 1. segmented backbone (within the body-endoskeleton) made of bone and/or cartilages
2. cranium – encases all or part of the brain
3. hinged jaws – except agnathans like the lamprey
Term
Class Fish
Definition
They are aquatic. Have: hinged jaws, paired gills, paired fins.
Term
Osteichthyes
Definition
“bony fishes”; most abundant and diverse group of vertebrates. Skeleton reinforced with bone. They have a swim bladder to avoid sinking. Have a two chambered heart.
Examples: salmon, tuna, goldfish
Term
Chondrichthyes
Definition
“cartilaginous” fish. Skeleton- made with cartilage.  Must constantly keep swimming since they don’t have a swim bladder. Diversity examples: sharks, skates, stingrays
Term
Class Amphibians
Definition
evolved from fish with lungs and lobed fins. Breathe through lungs and skin. Bring in water through skin. External fertilization requires water for gamete dispersal. Ectothermic (don't maintain a constant body temp). EX: frogs, toads, salamanders, caecilians.
Term
class reptiles
Definition
evolved from amphibians with modifications for land life. overlapping scales form an external barrier. Internal fertilization. Amniotic eggs with protective shells. Ectothermic. Ex:lizards, snakes, turtles, crocodiles.
Term
Class Aves
Definition
evolved from reptiles. have eggs, scales and feathers, like reptiles. No teeth, few vertebrae in tail, light honeycomb bones light, all perfect for flight. Strong breast muscles. Endothermic. 4 chambered heart.
Term
mammals
Definition
evolved from reptiles. hair for insulation. Mammary glands for producing milk. 4 types of teeth(incisors, canines, pre molars, molars)
Term
monotremes
Definition
mammals which lay amniotic eggs. platypus, 2 echidna species
Term
marsupials
Definition
mammals. embryo nurtured in primitive placenta for only a short time. Development continues in the marsupium (pouch) in which the young can attach to nipples for months.
Examples: kangaroo, koala, wombat, oppossum
Term
Eutherans
Definition
placental mammals. Longer gestation time in uterus. thus born more developed.
Term
convergent evolution
Definition
different species develop similar characteristics through evolution in different places because they face similar environments.
Term
humans are..
Definition
Domain: Eukarya
Kingdom: Animal
Phylum: Chordata
Subphylum: Vertebrata
Class: mammal
Order: primates
Family: hominidae
Genus: homo
Species: sapiens
Term
Epithelial(epithelium) tissue
Definition
Sheets that cover external surfaces or line the inside of organs/cavities.
Term
Secretory epithelium
Definition
part of epithelial (epithelium) tissue. glandular epithelium . 1. exocrine = secretions released onto free surface and carried through ducts/tubes (ex: tears, digestive enzymes, sweat, oil)
2. endocrine = no ducts, secrete from free surface directly into body fluid/blood (ex: hormones)
Term
Structures of epithelium
Definition
1. simple squamous- single layer of flattened epithelium cells. For diffusion and filtration. In blood vessels and sacs in lungs.
2. simple cuboidal- single layer of cubed shaped cells. used for glandular secretion and absorption. In testes, ovaries and kidneys.
3. simple columnar- single layer of tall cells.used for secretion of mucus and movement of materials, and absorption. found in lining airways.
4. stratified squamous- layers of flattened cells. Used for protection, like skin.
Term
connective tissue
Definition
cells that secrete specific protein fibers and ground substance. Six types: 1.loose-loose fibers and cells in extensive ground substance. Elastic binding and packaging. found under skin. 2. fibrous- used for support, strength, elasticity. Found in ligament(bone to bone), tendons 3. adipose- fat tissue. used for padding, insulation and energy. around most organs 4. cartilage- cells imprisoned in a rubbery ground substance, no blood vessel supply. Provides flexible support resists compression, low friction movement in joints. 5. Bone- cells imprisoned in a mineralized ground substance with a blood vessel supply. Provide sturdy support, movement, protection of organs. 6.blood-
Term
muscle tissue
Definition
bundles of long contractile cells with many mitochondria (b/c they need a lot of energy). Types:
-skeletal- bundles of long striated (banded or stripped) cells. voluntary movement.
-cardiac- bundles of long stinded cells that are branched with gap junctions. Found in heart, to pump blood.
-smooth- not striated, involuntary contractions, slow but can be sustained. Found in stomach, intestines, esophagus, arteries, uterus
Term
nervous tissue
Definition
cells with long extensions, close to each other. They send and receive electrical signals along their plasma membrane.
Term
Homeostasis
Definition
the activities of cells, tissues, organs, and organ systems that keep an organism’s internal environment in a range that cells can tolerate
Term
pharynx
Definition
allows us to swallow without breathing food; entrance to both the wind pipe(trachea) and esophagus. When not swallowing the trachea is open, esophageal sphinter closes the esophagus. when swallowing, larynx forces the epiglottis to cover the trachea.
Term
esophagus
Definition
wavelike motion (peristalsis) to move food from pharynx to stomach.
Term
stomach
Definition
a.storage
b. chemical digestion – the enzyme pepsin and HCl digest proteins
c. mechanical churning by smooth muscle

Properties of cells lining stomach
(remember they sit in acid):
a. regenerate by mitosis every 3 days
b. not always immersed in acid, acid release is hormonally controlled by gastrin
c. protected by mucous
Term
small intestine
Definition
site for completion of chemical breakdown of all macromolecules into monomer form. Absorbs all nutrients. about 20 ft long. villi and microvilli on each epithelial cell give it the surface area advantage.
Term
pancreas
Definition
gland. Enzymes produced and secreted into the small intestine to complete the breakdown of carbohydrates, proteins, lipids and nucleic acids. Produced bicarbonate to neutralize acidity of the chyme comping from the stomach.
Term
liver
Definition
gland that produces bile, bile emulsifies (keeps them separated) fats
Term
gall bladder
Definition
stores the bile before it is secreted to the small intestine
Term
large intestine
Definition
concentrate and store waste. bacteria in large intestine have symbiotic relationship. they provide vitamins, we give them food and shelter. Peristalsis speed controls normal poop, diarrhea if too fast, or constipation if too slow.
Term
mammal carnivore
Definition
does not chew, large stomach, small intestines.
Term
respiratory surface must be..
Definition
moist because gases must be dissolved in fluid to diffuse through cell membranes.
Term
integumentary exchange
Definition
thin, moist skin. Requires moisture. found in jellyfish, worms.
Term
invertebrate gills
Definition
highly folded or feathery extensions of the body surface. Often combined with integumentary exchange. Depends on how advanced the circulatory system is.
Term
trachea
Definition
inner network of tubes that reach every cell. works with the exoskeleton. It isn't associated with the circulatory system because all cells are reached by trachaeae. Requires a lot of space inside the animal.
Term
vertebrate gills
Definition
extension of body surface called filaments that house blood vessels. The gills have to be efficient b/c there's less oxygen in water than in air. Efficient by making sure water and blood flow different ways.
Term
lungs
Definition
internal sac-like organ with close contact with blood vessels and connected to surface by moist epithelium. Mammals have two way tube; birds have bigger, one way lungs; amphibians have integumentary exchange as well as lungs.
Term
human breathing
Definition
nasal cavity--> pharynx--> larynx--> trachea--> branch--> bronchiole--> alveoli.
Inhaling contracts muscles to increase volume of thoracic cavity, diaphragm moves down, muscles expand rib cage. air moves from high pressure outside to low pressure inside.
Term
oxygen transport
Definition
hemoglobin in red blood cells.
Term
carbon dioxide transport
Definition
majority is converted to bicarbonate or can be carried by hemoglobin in RBCs
Term
open circulatory system
Definition
vessels are open ended inside the body, there is no distinction between blood and interstitial fluid. found in Arthropods, some mollusks
Term
closed circulatory system
Definition
closed network, blood distinct from interstitial fluid. Found in Vertebrates, most annelids, some mollusks. Can either be one circuit(fish) or have it be pulmonary and system.
Term
human blood flow
Definition
heart--> artery--> arterioles--> capillaries-->venule--> veins--> heart
Term
arteries and arterioles
Definition
carry blood away from heart. fast. high pressure. thick and elastic.
Term
capillaries
Definition
Connect arterioles and venules; not all capillaries have blood at any one time- controlled by smooth muscle rings (sphincters). slowest of all vessels. gradient pressure, higher on arteriole end. simple squamos epithelium and basement membrane, “leaky” for exchange, narrow.
Term
Vasoconstriction
Definition
diameter of a vessel is made smaller
Term
Vasodilation
Definition
made larger, smooth muscle cells relax
Term
veins/venules
Definition
carry blood back to the heart. starts slow but then speeds up as it gets closer to the heart. lowest pressure. have valves that keep the blood from going the wrong way.
Term
human heart
Definition
four chambers
1- atria- receive blood from veins
2- ventricles- receive blood from atria, pump this blood out arteries
3- Atria Ventricular valves- between atria and ventricles
4- semilunar valves- between ventricles and arteries.
Term
spermatogenesis
Definition
formation of sperm. located at the seminiferous tubules.
Term
Order of development of sperm
Definition
a.Spermatogonium (diploid)
b. differentiation and onset of meiosis I
c. 1st degree spermatocyte d. MI finishes
e. Two 2nd degree spermatocytes
f. mitosis
g. Four spermatids (haploid)
h. become mature sperm
Term
epidydmis
Definition
sperm mature and are stored here
Term
seminal vesicles
Definition
gland that produces fructose in semen (used as “nourishment” for sperm)
Term
prostate
Definition
produces alkaline fluid in semen to counteract urine in the urethra and acidity on the vagina
Term
bulbourethial gland
Definition
secretes lubricative mucus in semen
Term
Oogenesis
Definition
development of ovum (egg), occurs over decades. Takes place in ovary, within a follicle.
Term
development of an egg
Definition
a. oogonium (diploid)
b. differentiation and MI begins
c. 1st degree oocyte that is arrested in prophase I (when a female is born all of her eggs are in the stage)
d. MI completes
e. 1 polar body (DNA, no cytoplasm) and 1 ovum (mature 2nd degree oocyte)
f. MII (completes upon sperm entry)
g. 3 polar bodies and 1 ovum (haploid)
Term
fertilization
Definition
takes place in the Fallopian tube. . sperm swim to egg
2. sperm use enzymes to digest zona pellucida
3. sperm and egg’s plasma membranes fuse
4. sperm nucleus enters egg (MII completes for egg)
5. fertilization envelope forms (keeps other sperm from entering)
6. nuclei fuse --> zygote
Term
Gastrulation
Definition
around 9 days (post fertil.) 1. ectoderm --> skin, nerves, brain 2. mesoderm--> most organs (blood, bone, muscles) 3. endoderm --> digestive tract
Term
Blastocyst
Definition
day 5 or 6 1. Inner cells - baby 2. Outer cells – trophoblast --> implantation and placenta, secrete HCG
Term
Neurulation
Definition
about 20 days, development of the spinal cord and brain
Term
Embryonic period
Definition
all major organs develop during this time
Term
Oxytocin
Definition
(secreted by mother’s pituitary and the fetus) promotes SMC contractions of the uterus and promotes prostaglandin production
Term
Prostaglandins
Definition
(secreted by placenta) promotes SMC contractions
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