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BioChemistry Keywords Ch04
BioChemistry DPPP-368 Keywords Chapter 4
69
Biochemistry
Undergraduate 3
03/30/2011

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Term
6-phosphogluconate Dehydrogenase-
Definition
enzyme in the pentose phosphate pathway; forms ribulose 5-phosphate from 6-phosphogluconate
Term
ACETIC ACID -
Definition
(CH3C=OOH) simple carboxylic weak acid, gives vinegar sour taste & smell,Ethanol metabolism. —pKa = 4.76
Term
ACETOACETIC ACID -
Definition
(CH3C(O)CH2CO2H) weak acid (ketone body)—fatty acid oxidation to ketone bodies. —pKa = 3.77
Term
ACETYLSALICYLIC ACID -
Definition
weak acid.—aspirin. antiplatelet effect, inhibits production of thromboxane. —pKa = 3.5. reduces inflammation, relieves pain and soreness, decreases clotting and reduces pathologic fever. Effects are thought to be a result of ASA reducing the production of prostaglandins and thrombaxanes through complex mechanisms involving the cyclooxygenase (COX) enzyme which is required for the synthesis of both prostaglandin and thrombaxane.
Term
AMMONIA -
Definition
(NH3) base—produced from amino acid catabolism or absorbed through intestines—toxic to neutral cells
Term
AMMONIUM ION -
Definition
(NH4+) weak acid—dietary nitrogen containing compounds. —pKa = 9.25.
Term
Anabolic Pathway -
Definition
The series of chemical reactions that constructs or synthesizes molecules from smaller units, usually requiring input of energy (ATP) in the process.
Term
Antimalarial Drugs -
Definition
used for prophylaxis, treatment & prevention of malaria. Some antimalarial agents, particularly chloroquine and hydroxychloroquine, are also used in the treatment of rheumatoid arthritis and lupus associated arthritis.
Term
BICARBONATE -
Definition
(HCO3-) base-major buffer for plasma & interstitial fluid CO2 + H2O <--> H2CO3 <--> HCO3- + H+
Term
Biosynthesis -
Definition
an enzyme-catalyzed process in cells of living organisms by which substrates are converted to more complex products. The biosynthesis process often consists of several enzymatic steps in which the product of one step is used as substrate in the following step.
Term
CARBON DIOXIDE -
Definition
expelled by the lungs to keep pH of blood in range CO2 + H2O <--> H2CO3 <--> HCO3- + H+. Enzyme is carbonic anhydrase.
Term
CARBONIC ACID -
Definition
weak acid—from CO2 from TCA cycle.— pKa = 3.80. (major acid produced by body/own buffer)
Term
CITRIC ACID -
Definition
weak acid—from TCA cycle & diet (i.e. citrus fruits). Multiple —pKa = 3.13 and 4.76 and 6.40
Term
CONJUGATE BASE -
Definition
dissociated anionic component of weak acid (A-) ends in -ate
Term
Cytosol -
Definition
the liquid found inside cells. In eukaryotes, this liquid is separated by cell membranes from the contents of the organelles suspended in the cytosol.
Term
DISSOCIATION CONSTANT -
Definition
expresses relationship between H+ or OH- & water at equilibrium. The constant for pure water is Kw=1x10-14 = [OH-][ H+]/[H2O]
Term
Detoxification -
Definition
the physiological or medicinal removal of toxic substances from a living organism. In conventional medicine, detoxification can be achieved by decontamination of poison ingestion, antidotes or dialysis.
Term
Fava Bean -
Definition
a species of bean (Fabaceae) native to north Africa and southwest Asia, and extensively cultivated elsewhere. Contains oxidant purine glycosides that contribute to hydrogen peroxide formation.
Term
Fructose 6-phosphate –
Definition
a fructose sugar phosphorylated on carbon. The ?-D-form of this compound is very common in cells, and the vast majority of glucose and fructose entering a cell will become converted to this at some point.
Term
GLUCAGON -
Definition
Hormone, secreted by the pancreas alpha cells. Raises blood glucose levels. Effect is opposite of insulin which lowers BG levels. Pancreas releases glucagon when BG levels fall too low. Causes Liver to convert stored glycogen to glucose
Term
Glucose-6-Phosphate -
Definition
catalized from glucose by hexokinase—will proceed to glycolysis or glycogen synthesis.
Term
Glucose-6-phosphate dehydrogenase -
Definition
cytosolic enzyme in the pentose phosphate pathway, a metabolic pathway that supplies reducing energy to cells by maintaining the level of the co-enzyme nicotinamide adenine dinucleotide phosphate (NADPH).
Term
Glutathione Peroxidase-
Definition
the general name of an enzyme family with peroxidase activity whose main biological role is to protect the organism from oxidative damage. The biochemical function of glutathione peroxidase is to reduce lipid hydroperoxides to their corresponding alcohols and to reduce free hydrogen peroxide to water.
Term
Glutathione Reductase-
Definition
an enzyme that reduces glutathione disulfide (GSSG) to the sulfhydryl form GSH, which is an important cellular antioxidant.
Term
Glutathione-
Definition
antioxidant, helps protect cells from reactive oxygen species such as free radicals and peroxides. Its a tripeptid and contains a peptide linkage between the amine group of cysteine and the carboxyl group of the glutamate side chain.
Term
Glyceraldehyde-3-phosphate-
Definition
an intermediate in both glycolysis and gluconeogenesis
Term
Glycolysis-
Definition
is the metabolic pathway that converts glucose into pyruvate. The free energy released in this process is used to form ATP and NADH. Present in all cell types.
Term
H2O2-
Definition
hydrogen peroxide, which is a product made naturally by humans during oxidative metabolism, it is a potent free radical
Term
HEMOGLOBIN -
Definition
main buffer of pH in blood cells and transports O2. Affintity for H+ and O2
Term
HENDERSON-HASSELBALCH EQUATION -
Definition
disassociation constant formula for weak acids. pH = pKa + log [A-]/[HA]
Term
HYDROGEN BOND -
Definition
weak, noncovalent bond between hydrogen and oxygen, nitrogen, sulphur or fluorine
Term
Hexose Monophosphate Shunt-
Definition
another name for the pentose phosphate pathway
Term
INSULIN -
Definition
produced in pancreas beta cells. hormone that keeps blood pH & glucose use in check after a meal
Term
ION PRODUCT of water
Definition
Kw= [OH-][ H+] = 1 x 10-14
Term
Irreversible-
Definition
a one way reaction, usually a reaction with a very negative delta G
Term
KETOACIDOSIS -
Definition
when ketone bodies build in blood = pH level low (more acid), PaCO2 level low (from blowing off C02), serum glucose level high
Term
KETONE BODIES -
Definition
result of converting fatty acids for energy in liver to beta-hydroxybutyric acid and acetoacetic acid due lack of insulin in blood
Term
KUSSMAUL RESPIRATION -
Definition
breathing fast & deep (tachypnea and hyperpnea) to remove CO2 from the body and drop pH by lowering carbonic acid in body. This respiratory pattern is associated with diabetic acidosis. A deep, gasping, repetitive respiratory pattern (hyperventilation) associated with profound acidosis. A compensatory defense of severe acidosis such as diabetic ketoacidosis.
Term
Ka -
Definition
equilibrium constant for dissociation of a weak acid; higher Ka=greater chance of dissociation of proton (stronger acids typically have a higher Ka than weak acids)
Term
LACTIC ACID -
Definition
weak acid from—Anaerobic glycolysis. —pKa = 3.73
Term
METABOLIC ACIDS -
Definition
acids produced by the body through metabolism that generate CO2; all acids produced in normal body metabolism but NOT including CO2 - metabolic acids are not respirable, must be neutralized, metabolized or secreted
Term
METABOLIC BASES -
Definition
ammonia is the major buffering metabolic base to accept protons in blood and kidneys
Term
NADPH-
Definition
produced by the oxidative phase of the pentose phosphate pathway, it is an antioxidant which reduces free radicals to keep them from harming cells
Term
Nonoxidative-
Definition
a pathway in the pentose phosphate pathway where 5-carbon sugars are synthesized; alternative to glycolysis (reversible)
Term
Oxidative-
Definition
a pathway in the pentose phosphate pathway where NAD+ is reduced to NADPH using the energy from the conversion of glucose-6-phosphate into ribulose 5-phosphate (nonreversible)
Term
Oxidized Glutathione-
Definition
NADPH is used for detoxification in reducing oxidized glutathione
Term
PHOSPHORIC ACID -
Definition
weak acid.—dietary organic phosphates.—pKa = 6.8. excreted through urine
Term
Pentose Phosphate Pathway-
Definition
(hexose monophosphate shunt) Makes NADPH for reductive biosynthesis and Ribose-5-phosphate for nucleotide biosynthesis. A process that generates NADPH and pentoses. There are two distinct phases in the pathway. The first is the oxidative phase, in which NADPH is generated, and the second is the non-oxidative synthesis of 5-carbon sugars.
Term
Peroxide-
Definition
(H2O2) product when there is deficient enzyme glucose 6-P dehydrogenase
Term
Primaquine-
Definition
medication used in the treatment of malaria and pneumocystis pneumonia
Term
Product Inhibition-
Definition
enzyme inhibition where the product of an enzyme reaction binds to the enzyme and inhibits its activity
Term
RESPIRATORY ALKALOSIS -
Definition
caused by hyperventilation resulting in low PaCO2 (<35 mmHg)& high pH levels (>7.45)(more basic) Treatment = breath into bag. Hyperventilation is a common cause of respiratory alkalosis because during hyperventilation, excessive amounts of CO2 are lost during expiration. During respiratory alkalosis, the patient's blood pH will be greater than 7.4, and the urine will also be alkaline since the kidneys will release HCO3- into the urine, and conserve H+ in the blood.
Term
RESPIRATORY COMPENSATION -
Definition
mechanisms triggered by hypothalamus to restore homeostasis to body
Term
Reactive Oxygen Species (ROS)-
Definition
chemically reactive molecules that contain oxygen; examples include oxygen ions and peroxides
Term
Reduced Glutathione-
Definition
product of the glutathione reductase reaction
Term
Reductive Biosynthesis-
Definition
NADPH is used for reductive synthesis: fatty acid synthesis, fatty acid chain elongation, cholesterol synthesis, neurotransmitter synthesis, nucleotide synthesis, superoxide synthesis
Term
Reversible-
Definition
a reaction that can go both ways, many endergonic reactions will be able to go both ways with positive delta G.
Term
Ribose-5-phosphate-
Definition
product in both oxidative and non-oxidative pathways of the pentose phosphate pathway
Term
STRONG ACID -
Definition
acids that completely dissociate in solution. Usually not good buffers.
Term
SULFURIC ACID -
Definition
strong acid.—Dietary sulfate & sulfur containing amino acids.—pKa = complete dissociation
Term
Sulfa Drugs-
Definition
synthetic antimicrobial agents that contain the sulfonamide group; in bacteria, antibacterial sulfonamides act as competitive inhibitors of the enzyme dihydropteroate synthetase (DHPS), an enzyme involved in folate synthesis.
Term
Sulfhydryl Group-
Definition
(thiol group) sulfur analogue of an alcohol; GSH is a product when there is deficient enzyme glucose 6-P dehydrogenase and of the glutathione reductase reaction
Term
Superoxide Ion-
Definition
an anion with the chemical formula O2?. With one unpaired electron, the superoxide ion is a free radical
Term
Vitamin C -
Definition
absorbic acid; a water soluble vitamin
Term
Vitamin E -
Definition
alpha-tocopherol; a fat soluble vitamin that is an important antioxidant and protects against free radicals in the body
Term
WEAK ACID -
Definition
acids that dissociate only to a limited extent in solution
Term
beta-HYDROXYBUTYRIC ACID -
Definition
weak acid (ketone body) —comes from fatty acid oxidation to ketone bodies.— pKa = 4.41.
Term
pH -
Definition
must maintain for structure of protein—altered structure=protein function change, enzyme rate and solubility. pH = -log [H+]. "Potential of Hydrogen"
Term
pKa -
Definition
the negative log of Ka. SMALLER pKa means stronger dissociation.
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