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Biochemistry chp. 19 Nuc.Acids
Review of chapter 19 (Nucleic Acids)
16
Chemistry
Undergraduate 3
12/03/2008

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Term
Influence on Tm of DNA:
Definition
  1. GC content: the higher the GC%, the higher the Tm
  2. Salt: the higher the [salt], the higher the Tm (ions shield charges and lessen repulsion between phosphates).
  3. Low or high pH decrease Tm (ionization of the bases)
  4. Organic compounds destabilize the double helix by competing as H-bond partners or by disrupting the water shell around the bases.
Term
Topoisomerases
Definition
Proteins that catalyze the interconversion of relaxed and supercoiled DNA in bacteria.
Term

[Several Kinds of RNA]

Ribosomal RNA (rRNA)-

Definition

- An integral part of ribosomes (intracellular ribonucleoproteins that are the sites of protein synthesis).

- Ribosomal RNA is the most abundant class of ribonucleic acid, accounting for about 80% of the total cellular RNA.

Term

[Several Kinds of RNA]

 Transfer RNA (tRNA)

Definition

-Molecules carry activated amino acids to the ribosomes for incorporation into growing peptide chains during protein synthesis.

- tRNA molecules are only 73 to 95 nucleotide residues long.

- Account for about 15% of the total cellular RNA.

Term

[Several Kinds of RNA]

 Messenger RNA (mRNA)

Definition

- molecules encode the sequences of amino acids in proteins.

- They are the "messengers" that carry information from DNA to the translation complex where proteins are synthesized.

- In general, mRNA accounts for only 3% of the total cellular RNA. These molecules are the least stable of the cellular ribonucleic acids.

Term

[Several Kinds of RNA]

 Small RNA molecules

Definition

- are present in all cells.

- some have catalytic activity or contribute to catalytic activity in association with proteins.

- Many of these RNA molecules are associated with processing events that modify RNA after it has been synthesized.

Term
Chromatin
Definition
- An association of DNA with proteins
Term
Histones
Definition

- The major proteins of chromatin

- H1, H2A, H2B, H3, and H4

-Positively charged histones bind to negatively charged sugar-phosphates of DNA

Term
Solenoid
Definition
Higher level of chromatin structure in which adjacent nucleosome associate via histone H1
Term
Nucleases
Definition
Enzymes that catalyze the hydrolysis of phosphodiester bonds.
Term
Exonucleases
Definition
- Catalyze the hydrolytic removal of terminal nucleotides
Term
Endonucleases
Definition
- Catalyze the hydrolytic cleavage of internal phosphodiester bonds
Term
"Type A" Ester Bond
Definition
Connect the 3'hydroxyl group of a nucleotide with the phosphorus.
Term
"Type B" Ester Bond
Definition
- Connect the 5'-hydroxyl group of a nucleotide with the phosphorus.
Term
Palindromes
Definition
-inverted sequences of DNA with two-fold symmetry over two strands.
Term
Restriction endonucleases
Definition

- Enzymes produced by bacterial cells to degrade or "restrict" foreign DNA molecules.

- Recognize specific base sequences in double stranded DNA andcatalyze hydrolytic cleavageof the two strands in or near that region.

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