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Biochem III-Johnson
Things to Know-Johnson
79
Other
Not Applicable
03/31/2004

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Term
An essential Amino Acid for normal individuals
Definition
Phe
Term
The carbon chain for Cys comes from
Definition
Ser
Term
When muscle is used as a source of energy and
AA’s, amino groups are transported to the liver as
Definition
Ala, Gln
Term
The synthesis of each molecule of urea requires ATP
Definition
4
Term
The TCA Cycle intermediate produced by the urea cycle is...
Definition
fumarate
Term
A deficiency of Ornithine Transcarbamylase
Definition
Type II Hyperammonemia
Term
A deficiency of Cytathionine Synthetase results
Definition
Homocystinuria
Term
NO is derived from
Definition
Arg
Term
Trypsin cleaves specifically for ___, ___ amino acids.
Definition
Lys, Arg
Term
Chymotrypsin cleaves at
Definition
aromatic AA(Phe, Tyr, Trp, Leu)
Term
enterokinase (enteropeptidase) activates ___ to ___ (which, in turn, activates ___, ___, ___)
Definition
trypsinogen; trypsin; chymotrypsinogen, proelastase
and procarboxypeptidase
Term
___ --> ___ autoactivation occurs at acid pH with Asp in active site
Definition
pepsinogen; pepsin
Term
1/3 AA pool from ___ and 2/3 AA pool from ___. AA Transport: AA’s (L/D amino acids) are principally transported via ___ into the cytosol of intestinal epithelial cells and into the blood via ___ transporters.
Definition
diet, turnover; L-aa; Na+-dependent co-transporters; facilitated
Term
AMINO ACID TRANSPORT: cystine not reabsorebed from urine and precipitates in kidneys
Definition
cystinuria
Term
AMINO ACID TRANSPORT: failure to absorb Trp in intestines or recover from urine-results in pellagra b/c Trp def leads to niacin def
Definition
Hartnup's failure
Term
Oxidative deamination releases ___ from AAs, the classic example is ___ -> alpha-KG and NH4+, catalyzed by glutamate dehydrogenase. This easily reversible reaction uses ___ or ___ as a coenzyme.
Definition
NH4+; Glu; NAD+ or NADP+
Term
transaminase/amino transfer requires _________ coenzyme
Definition
pyridoxal phosphate (Vit.B6)
Term
Plays role in transfer of methyl group from 5-methyl THF to Homocysteine to make Met.
Definition
Vitamin B12
Term
recieve 1-C groups in degradative steps and donate them in synthesis steps
Definition
THF, SAM
Term
cofactor in conversion of methylmalonyl-CoA to Succinyl-CoA by methylmalonyl mutase and conversion of homocysteine to methionine by methionine synthase...deficiency leads to anemia
Definition
Vit. B12
Term
Thr enters as ___. Ile & Val enter as ___.
Definition
alpha-Ketobutyrate; Propionyl CoA
Term
A Defect in methylmalonyl CoA mutase(which requires ___) leads to ___ disease in the conversion of homocysteine to methionine.
Definition
Vit. B12; Methylmalonic acidemia
Term
3-C AAs, Gly, Ala, Ser, Cys(all degrade to pyruvate and thus are glucogenic/gluconeogenic) ->
Definition
Pyruvate
Term
4-C AAs: Asp, Asn--> ___.
Met --> ___ --> ___. Genetic defects here result in ___ and ___. Sulfur used for Cys synthesis from ___.
Definition
Oxaloacetate.
SAM, Succinyl CoA; Homocystinuria and Cystathioninuria; Ser
Term
Ile and Val enter as _________.
Definition
Propionyl CoA
Term
___________ required for conversion of propionyl CoA --> Methylmalonyl CoA
Definition
Biotin
Term
_________ required for conversion of methylmalonyl CoA --> Succinyl CoA
Definition
Vit B12 (Cobalamin)
Term
5-C AAs His, Arg, Pro, Glu, Gln --> _________.
Definition
alpha-ketoglutarate
Term
His --> ________ or ___________.
Definition
Histamine, Glu
Term
Pro --> Glu via _________ .
Definition
pyyroline 5-carboxylate intermediate
Term
Arg & Pro --> _________ --> __________.
Definition
Glutamate gamma-semialdehyde, glu
Term
Branched chain aa: Ile and Leu primarily metabolized in ___, Val in ___. Val & Ile --> ___ (like Met).
Definition
muscle; brain; Succinyl CoA
Term
defective branched chain alpha-ketoacid decarboxylase
Definition
maple syrup urine disease
Term
Leu and Lys are ___.
Definition
strictly ketogenic
Term
Leu and Lys -> ___.
Definition
Acetoactyl CoA
Term
glucogenic, non-essential AAs that degrade to pyruvate are ________, ________, _________, and _________.
Definition
Ser, Gly, Cys, Ala (some guys cick ass)
Term
The AAs are gluconeogenic and degrade to TCA cycle intermediates- _______ and _______.
Definition
Asp, Asn
Term
Thr --> ___ -> ___ -> ___.
Definition
alpha ketobutyrate, propionyl CoA, Succinyl CoA.
Term
___ and ___ pathways converge at alpha-ketobutyrate and metabolic defects here include ___ and ___.
Definition
Met, Thr, Propionic Acidemia, Methylmalonic Acidemia (Ile and Val enter here as propionyl CoA)
Term
Aromatic AAs- Phe --> ___ and with defective Phe hydroxylase you get the condition known as ___ (PKU -> -> phenylacetate). ___ is needed for all hydroxylations.
Definition
Tyr, PKU, Biopterin
Term
Tyr --> ________ --> __________, _________ (catecholamines)
Definition
DOPA, Norepi, Epi
Term
Condition due to missing tyrosinase that converts DOPA to melanin
Definition
albinism
Term
When Tyr -X-> Fumarate and dark urine is produced due to oxidation of homogentisate, the condition is called...
Definition
alcaptonuria
Term
Trp -> ___.
Definition
Serotonin
Term
Essential AAs - Branched Chain
Definition
Ile, Leu, Val
Term
Essential AAs - Aromatic
Definition
Phe, Tyr, Trp
Term
Essential AAs - Sulfur containing
Definition
Met, Cys
Term
Essential AAs - Basic
Definition
Lys, His
Term
Other Essential AA
Definition
Thr
Term
Non essential AAs-Pyruvate-->
Definition
Ala
Term
NE AAs-Oxaloacetate-->
Definition
Asp, Asn
Term
Non essential AAs-Alpha-ketoglutarate-->
Definition
Glu, Gln, Pro
Term
Non essential AAs-Met-->
Definition
Cys
Term
Non essential AAs-Phe-->
Definition
Tyr
Term
Non essential AAs-CO2 & NH4--> ______ --> ______ .
Definition
Gly, Ser
Term
NE AAs-3-Phosphoglycerate-->
Definition
Ser
Term
urea synth begins in the...
Definition
mitochondria
Term
Urea Cycle: First is synth of ________ from NH4+, CO2, And 2-ATP using __________.
Definition
carbamoyl phosphate, carbamoyl synthase I (with N-acetyl-glutamate as its positive allosteric modulator)
Term
Ornithine transcarbamylase forms ________ from Orn and Carbamoyl Phosphate.
Definition
citrulline
Term
citrulline is transported into the _________ where it is converted to __________.
Definition
cytosol, arginosuccinate
Term
Arginosuccinate lyase cleaves arginosuccinate to ________ and ________.
Definition
fumarate, arg
Term
Arginase, primarily found in ________, converts Arg to ________ + ________; arginase deficiency results in ________.
Definition
liver, urea, orn; arginemia
Term
Urea synth requires ________ equivalents of ATP
Definition
4
Term
Irreversible steps, the first and last are catalyzed by _______ and ________.
Definition
carbamoyl synthetase, arginase
Term
Patient can't synth urea, dies due to incr NH4+
Definition
Hyperammonemia
Term
Other metabolic defects include _________, __________, and ________.
Definition
Citrullinuria, Arginosuccinic acidemia, and Arginemia (all cause retardation)
Term
______ and _______ are used to remove ammonia and treat Hyperammonemias via conjugation to Gly and Gln, respectively
Definition
Benzoic Acid, Phenyl Acetate
Term
Gly and Arg --> ______, ______, and _____.
Definition
Creatine, Creatine Phosphate(energy source in mm) and Creatinine
Term
Arg is substrate for the synth of -> ___
Definition
NO (smooth mm relaxation; it activates guanylate cyclase to produce cyclic GMP, and cGMP, like cAMP activates a
protein kinase that phosphorylates and inactivates myosin light-chain kinase (MLCK).)
Term
AA Dis-Transport(3)
Definition
Cystinuria, Hartnups Disease, 5-Oxoprolinuria
Term
Enzyme defect in carbamoyl PO4 synthase or N-acetyl glu synthase -> ___. Defect in Orn Transcarbymlase -> ___.
Definition
Type I Hyperammonemia; Type II Hyperammonemia
Term
Defect in Arginosuccinate synthase -> ___, defect in arginosuccinate lyase -> ___, defect in arginase -> ___.
Definition
citrullinuria; arginosuccinic acidemia; arginemia
Term
Defect in Trp transport -> ___; Defect in dibasic aa transport -> ___; Defect in Phe Hydroxylase or H4 Biopterin Synthase.
Definition
Hartnup's w/ niacin def (pellagra); Cystinuria; PKU
Term
Defect in homogentisate oxidase -> ___; Defect in tyrosinase -> ___; Defect in cystathione synthase -> ___.
Definition
alkaptonuria(black piss); albinism; homocystinuria;
Term
Defect in methylmalonic CoA Mutase -> ___; Defect in decarboxylase -> ___ disease.
Definition
methylmalonic acidemia; maple syrup urine
Term
THF, SAM, B12
Definition
accept, donate 1-methyl groups
Term
C-3, glycine, alanine, ser, cys->
Definition
pyruvate
Term
liver problems lead to ___ metabolism problems
Definition
urea
Term
The ___ is a large proteolytic complex that degrades proteins marked for destruction by having ___ linked to the epsilon-amino groups of Lys residues via an ATP requiring process
Definition
proteosome; ubiquitin
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