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Biochem II exam 4
Biochem 31-39
57
Biochemistry
Graduate
02/21/2011

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Term
Phospholipid
Definition
  • SER -> Golgi -> membrane
  • Even # of C
  • OH -phosphodiester-Glycerol or sphingosine
  • Unsaturated =
Term
Cholesterol
Definition
  • Polar hydroxyl group & hydrophobic steroid ring
  • Increases packing of phospholipids & slows lateral mobility
Term
Glycolipids
Definition
  • Get sugar group in Golgi
  • signaling for cell-cell and cell-matrix
Term
Peripheral membrane proteins
Definition
  • Loosely attached to either side of bilayer
  • Can remove without disrupting bilayer
  • Attached ionically to integral proteins to form constituents of cytoskeleton
  • Attach ionically to polar head for signal transduction
Term
Lipid raft
Definition
  • Specialized cholesterol-enriched microdomains
  • Phospholipids are tightly packed in raft
  • Role in endocytosis, cholesterol transport & signal transduction
Term
RBC membrane
Definition

Transmembrane proteins: glycophorins & protein 3 (Anion transport channel)

 

Peripheral membrane proteins: Bound to inner membrane leaflet.  Spectin, ankyrin, actin, protein 4.1

Term
RBC cytoskeleton
Definition
  • Actin protofilaments stabilized by tropomyosin
  • Each protofilament binds 6 spectrin tetramers (hexagonal array)
  • Spectrin-F-Actin complex stabilized by protein 4.1 which binds ends of spectrin
  • Spectrin attached to bilayer by peripheral proteins ankyrin & band 3
Term
Actin
Definition
  • Cell movement, form contractile rings in cell division
  • Many G actin -> 1 F actin (requires ATP)
  • G actin keeps adding @ 1 side, falling a other, think multi lead pencils.
  • regulates firmness of cytosol
Term
Intermediate filaments
Definition
  • Structural role in nuclear envelope & plasma membrane
  • Made of fibrous proteins
Term
Microtubules
Definition
  • Globular protein tubulin
  • hydrolysis of tubulin bound GTP needed for constant assembly/disassemble.
  • shuttles organelles
  • spindle formation in cell division
Term
G proteins
Definition
  • Amplify signal using second messenger
  • ligand binds -> protein changes shape and binds to/activates G protein
  • α subunit of G proteins bind to GTP 
  • GTP is converted to GDP by G protein inactivating signaling process.
Term
Catalytic receptors
Definition
  • Signal via +P of tyrosine.
  1. Signal molecule binds to receptor
  2. 2 receptor molecules come together in the membrane forming a dimer
  3. each tyrosine tail +P to other.
  4. adapter proteins containing SH2/SH3 dock with tyrosine+P and are activated.
Term

STATS

Signal Transducers & Activators of Transcription

Definition
  • SH2 containing latent proteins
  1. Bind to tyrosine+P
  2. When docked, acted on by tyrosine kinase and become tyrosine phosphorylated
  3. Tyrosine phosphorylated STAT dimers go to nucleus, bind to DNA, and activate transcription.
Term
P13 kinase pathway
Definition
  • Cell survival & growth
  1. P13 kinase binds to Tyr+P
  2. Activated P13 kinase +P to PIP2 -> PIP3
  3. Bad is +P by AKT to promote cell survival
Term
Insulin signaling
Definition
  1. Insulin binds to receptor
  2. Insulin receptor tyrosine kinase activity activated
  3. Induces tyrosine phosphorylation of IRS
  4. Activated IRS binds to & activates SH-2 proteins (RAS, STATs, PI-3)
Term
Steroid receptor signaling
Definition

Nuclear initiated: Steroid travels in plasma, then enters target cell.  Receptor in cytosol or nucleus.  Binding regulates gene transcription

Membrane initiated: Receptor found on membrane.

Term

G1

S

G2

M

Definition

G1: Cellular genome is diploid, resting state, make enzymes for DNA synthesis.

 

S: "Synthesis" DNA is replicated

 

G2: Make cell parts to prep for division.

 

M: "Mitotic phase" Cell devide.

Term

Cyclin-Cyclin Dependent Kinase (CDK)

 

Definition
  • Cyclin & CDK regulate cell cycle
  • Cyclins ↑ & (↓ Proteosomal pathway)
  • Cyclin + CDK = CDK protein+P -> +P to target protein.
Term
Factors that regulate activity of CDK
Definition
  • Association of CDK with cyclin
  • Stimulatory phosphorylation sites
  • Inhibitory phosphorylation sites
  • Binding of inhibitory proteins (CDK inhib)
Term

CDK1

 

CDK2

Definition

CDK1: Activates @ transition G2 -> M.  Targets mitotic machinery

CDK2: Activated @ transition G1 -> S.  Targets enzymes for DNA synthesis

Term
Getting past R
Definition

When the cell is close to restriction point:

  1. Growth factors induce cyclin D-CDK4 through MAP-kinase cascade
  2. Cyclin D-CDK4 hyperphosphorylates RB
  3. Inhibited release of E2F/DP1 by RB
  4. Activation of genes who's products are important for entry into S phase
Term
P53 protein
Definition
  • Halts cell cycle for DNA repair with P21(CIP)
  • Halts cell cycle at G1
  • If bad damage, induces apoptosis.
Term
Process of apoptosis
Definition
  1. Cell shrinks due to cleavage of lamin & actin
  2. Chromatin breaks down, DNA condensation
  3. Cell shrinks, eaten by macrophages

Attract MØ by releasing phosphotidylserine

Term
Caspase
Definition
  • Caries out execution of cell death
  • Catalytic cystein and cleaves target at an aspartate
  • Synthesized as a proenzyme
  • When initiator capsase induced, cleaves effector capsases for expanding cascade.
Term
BCL-2 gene
Definition

Pro survival: BCL-2, BCL-XL

Pro death: BAX, BAD, BID, BAK

  • ratio of survival : death decides cell fate.
  • Apoptosis mediated by cytochrome C from mitochondria
  • Pro-death have BH3 region to inhibit pro-life

 

Term
Where is the BCL-2 family in a healthy cell?
Definition
  • BCL-2 at Outer mitochondrial membrane bout to Apaf-1
  • Anti-apoptotic BCL-2 family in mitochondria
  • Pro-apoptotic BCL-2 in cytosol
Term
Apoptosis process from within
Definition
  1. Pro-apoptotic BCL-2 sense cell damage
  2. Pro-apoptotic travel to mitochondria surface
  3. interaction between pro and anti cause mitochondrial membrane to depolarize
  4. cytochrome c released into cytosol
  5. Cytochrome c + Apaf-1 + caspase 9 = apoptosome
  6. Effector caspases activated
Term
Apoptosis triggered from outside
Definition
  1. On cell surface TNF-α binds to TNF or FasL binds to Fas. 
  2. caspase 8 is activated
  3. apoptosis, then phagocytosis by MØ
Term
Serine/Threoine kinase receptor
Definition
  • Activation causes Serine/Threonine protein phosphorylation
  1. Bound by TGFβ or BMPs
  2. Dimerize & phosphorylate SMADs
  3. Complexes of SMADs bind DNA, promote transcription.
Term
MAP kinase pathway
Definition
  • Target is MAPK and their activator kinases
  • MAPK is activated by GTPase
  • pathway terminates at nucleus where activate transcription for growth & differentiation
Term
SH2/SH3 domain in proteins
Definition
  • Special stretches of AA in proteins for recognition and binding. 
  • SH2 recognize Tyrosine+P and allow them to bind to activated Tyrosine Kinase receptors. 
  • SH3 binds proline rich proteins
Term
Ras proteins
Definition
  • Function as switches.  On when GTP, off when GDP.
  • Ras activates a serine/threonine phosphorylation cascade that activates MAP kinase
  • MAP kinase moves to nucleus to +P to proteins for gene transcription
  • Activate cyclins & CDK.
Term
STI 571 (Gleevec)
Definition
  • Deregulated tyrosine kinase activity of BCR-ABL is a transforming event in leukemia
  • STI571 blocks the +P of tyrosine kinase by occupying the ATP spot of the Kinase.
Term
mutations in Ras proteins
Definition
  • Point mutations prevent Ras inactivation by GAP
  • Due to environmental carcinogens
Term
Gleevec blocks cell growth by it's ability to block ATP binding and inhibit the function of ...
Definition
Tyrosine kinase protein
Term
How does Infliximab (Remicade) work?
Definition
Inhibits Tumor necrosis factor alpha activity
Term
The polymorphic form of which gene is most commonly involved in increasing cancer risk in the general population?
Definition
A cytochrome P450 gene (CYP 1A1)
Term
Transtuzumab (Herceptin) directly inhibits
Definition
Activation of growth factor receptor
Term
How is Ras protein anchored to the cytoplasmic face of the plasma membrane?
Definition
Prenylation
Term
In the MAP kinase pathway
Definition
  • Ras proteins relay signals from membrane to MAP kinase in the cytosol
  • Receptors have inherent tyrosine kinase activity
  • MAP kinases are phosphorylated on serine and threonine AA residues
  • MAP kinase translocated into the nucleus to activate cell proliferation
Term
Embrel (ethanercept) is designed to reduce the effect of ___ on cells
Definition
TNF-alpha
Term
A type of lymphoma shows translocation and overexpression of the gene BCL2.  What does this tell you about the gene?
Definition
Pro-survival factor
Term
In burkitt's lymphoma the c-myc gene is...
Definition
Translocated from it's original site and overexpressed
Term
Formation of bcr-abl fusion protein in chronic myelogenous Luekemia (CML) is a result of...
Definition
Translocation of abl from one chromosome to another
Term
Signal splitting means
Definition
An activated tyrosine kinase may result in activation of several different signal transduction pathways within the cell
Term
In MAP kinase signaling pathway what enters the nucleus and activates transcription of genes involved in DNA synthesis
Definition
MAP-Kinase
Term
The proteins fos and jun function as
Definition
nuclear transcription factors
Term
Methotrexate, a Folate analog is most effective against cells in which phase of the cell cycle?
Definition
S-phase
Term
What functions as a cell cycle specific chemotherapy drug by binding to tubulin and interfering with spindle formation during mitosis?
Definition
Vinka alkaloids
Term
The active G1 cyclin-CDK2 complex phosphorylates what?
Definition
Proteins involved in DNA synthesis
Term
Which cyclin is sensitive to growth factors and is responsible for initiating the cell cycle?
Definition
Cyclin D
Term
The underphosphorylated form of RB binds to and inactivates what?
Definition
Transcription factors
Term
What cellular function is normally performed by the gene products of the BCl2 family?
Definition
form pores in the mitochondrial membrane
Term
In growth factor signaling, RAS functions as a ...
Definition
GTP binding protein
Term
erbB codes for
Definition
epidermal growth factor receptor
Term
What mechanism can convert a proto-oncogene into an oncogene?
Definition
point mutation
Term
What usually happens in growth factor signaling after tyrosine residues of a receptor of the receptor protein have been phosphorylated?
Definition
Proteins with SH2 function as adapter signaling proteins
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