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Biochemistry
Chapter 1
25
Biochemistry
Undergraduate 4
08/25/2013

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Term
Give the cell hierarchy (smallest to biggest, 6 of them):
Definition
  • The inorganic precursers
  • Metabolites
  • Building Blocks
  • Macromolecules
  • Supramolecular complexes
  • Organelles
Term
Give some examples of Inorganic Precursors:
Definition
carbon dioxide, water, ammonia, nitrogen, nitrate
Term
Give some examples of Metabolites
Definition
pyruvate, citrate, succinate, glyceraldehyde-3-phosphate, fructose-1,6-bisphosphate, 3-phosphoglyceric acid
Term
What are some examples of Building Blocks?
Definition
amino acids, nucleotides, monosaccharides, fatty acids, glycerol
Term
Give some examples of Macromolecules
Definition
proteins, nucleic acids, polysaccharides, lipids
Term
Give some examples of Supramolecular Complexes
Definition
ribosomes, cytoskeleton, multienzyme complexes
Term
Give some examples of Organelles
Definition
nucleus, mitochondria, chloroplasts, endoplasmic reticulum, golgi apparatus, vacuole
Term
Define Inorganic Precursors
Definition
Things found in nature without biological systems
Term
What are Metabolites?
Definition
Molecules that are products of biological metabolism. Made by organisms.
Term
How do amino acids build proteins?
Definition
The cell uses ATP to activate the amino acids. (tRNA + amino acid = aminacyl-tRNA - the chemically activated amino acid) Amino acids do not normally react without being activated because the carboxyl group is a poor electrophile and the reaction is thermodynamically unfavorable - entropy decreases.
Term
Define Building Blocks:
Definition
Monomer units and precursers to macromolecules
Term
Define Macromolecules
Definition
Polymer units of building blocks, held together through covalent bonds.
Term
Define supramolecular complexes
Definition
various members of one or more classes of macromolecules comes together to form specific assemblies that serve important subcellular functions. Their structural integrity is maintained by noncovalent forces: hydrogen bonds, ionic attractions, van der Waals forces, and hydrophobic interactions between macromolecules. (You can start to see these by electron microscopy - and sometimes light microscopy)
Term
Define Organelles:
Definition
They are cellular inclusions found only in eukaryotic cells, usually membrane bound, and are dedicated to important cellular tasks. (Can be seen by visual microscopy)
Term
Biological Macromolecules that are polymers are _________, __________, and __________, while _________ are made up of simpler molecules.
Definition
proteins, nucleic acids, carbohydrates, lipids
Term
How do amino acids build proteins?
Definition
They are activated by ATP used by the cell. tRNA attaches to the 3' prime end of the amino acid, causing it to become a good electrophile. (Originally, the carboxyl group on the amino acid is a poor electrophile, and the reaction between two amino acids is thermodynamically unfavorable -entropy decreases. Aminacyl-tRNA is the chemically activated form of an amino acid)
Term
Polysaccharides are built by combining the _____ of one _______ to the _______ of the next ________ in the polymer
Definition
C-1, sugar, C-4 O, sugar
Term
_______________ have a sense to their structure. The sequential order of their component building blocks has the capacity to specify information.
Definition
Macromolecules
Term
Name the weak forces chemical forces (4 of them):
Definition
  • Van der Waals interactions
  • Hydrogen bonds
  • Ionic interactions
  • Hydrophobic interactions
Term
The purpose of Weak Chemical Forces is?
Definition
to maintain biological structure and determine biomolecular interactions
Term
Hydrogen bonds can form bonds with?
Definition
O,N,F
Term
What are hydrogen bonds?
Definition
hydrogen atoms covalently bonded to an electonegative atom and a second electronegative atom that serves as the hydrogen bond acceptor.
Term
What is an ionic bond?
Definition
Ionic bonds are the result of attractive forces between oppositely charges structures, such as negative carboxyl groups and positive amino groups. Ionic interactions can impart a high degree of structural specificity.
Term
What are Van der Waal forces?
Definition
induced electrical interactions between closely approaching atoms or molecules as their negatively charged electron clouds fluctuate instantaneously in time.
Term
What is structural complimentarity?
Definition
Lock and key: it is the ability for one molecule, or protein, or macromolecule, etc., to recognize another that it can form a weak chemical bond with based on their complementary structures.
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