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BIO part 1
first third of MCDB 1A material
55
Biology
Undergraduate 2
12/09/2010

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Term
isomers
Definition
molecules that have same chemical formula, but different arrangement
Term
hydrolysis reaction
Definition
breakdown of polymers -> monomers, H2O split up and added to monomers
Term
enzymes
Definition
catalytic proteins that speed up biochemical reactions
Term
defensive proteins
Definition
recognize and respond to non-self substances
Term
hormonal/regulatory proteins
Definition
control physiological processes (insulin)
Term
receptor proteins
Definition
receive and respond to molecular signals from outside and inside organism
Term
storage proteins
Definition
store amino acids for later use
Term
structural proteins
Definition
provide stability and movement
Term
transport proteins
Definition
carry substances w/i organism (hemoglobin)
Term
genetic regulatory proteins
Definition
regulate when, how and to what extent a gene is expressed
Term
alpha helix
Definition
right-handed coil that turns in same direction as standard wood screw
Term
beta pleated sheet
Definition
formed from 2 or more polypeptide chains that are almost completely extended and aligned
Term
molecular chaperones
Definition
help shape proteins
Term
native form
Definition
nice folded form of protein
Term
fluid mosaic model
Definition
phospholipid bilayer serves as a lake where proteins float
Term
transfection
Definition
genetic transformation of eukaryotic cells by DNA
Term
transgenic
Definition
organism that has taken up DNA
Term
semiconservative replication
Definition
each new copy of DNA has one strand from original copy after replication
Term
DNA polymerases
Definition
add nucleotides to growing chain
Term
DNA ligase
Definition
links okazaki fragments together
Term
transcription
Definition
DNA --> RNA
Term
translation
Definition
RNA --> amino acid sequence
Term
RNA polymerase
Definition
catalyze synthesis of RNA from DNA
Term
3 sites for tRNA binding
Definition
-A (amino acid site where charged tRNA anticodon binds to mRNA codon, lining up correct AA to growing chain
-P (polypeptide site) where tRNA adds amino acid to polypeptide chain
-E (exit) where uncharged tRNA resides before being released from ribosome and going back to cytosol to pick up another AA
Term
hydrolysis
Definition
break apart
Term
proteolysis
Definition
cutting of polypeptide chain
Term
glycosylation
Definition
addition of sugars to proteins to form glycoproteins
Term
phosphorylation
Definition
addition of phosphate groups to proteins, and is catalyzed by protein kinases
Term
somatic mutations
Definition
occur in body cells, not passed on to children
Term
germ line mutations
Definition
occur in cells that give rise to gametes, passed on to offspring
Term
silent mutations
Definition
don't affect protein function
Term
loss of function mutations
Definition
affect protein funcion

usually recessive, as one functional allele will still produce a working protein
Term
gain of function mutation
Definition
leads to protein with altered function

usually dominant, as normal allele doesn't stop mutant from functioning
Term
conditional mutations
Definition
only display phenotypes under restrictive conditions (ie. high temperature)
Term
point mutation
Definition
results from gain, loss, or substitution of a single nucleotide
Term
chromosomal mutations
Definition
can change position/orientation of DNA segment, or cause segment to be duplicated or simply lost
Term
mutagens
Definition
things that cause mutations
Term
missense mutations
Definition
genetic code changed so that one AA is switched with another in a protein
Term
nonsense mutation
Definition
causes a stop codon to form in mRNA --> short proteins
Term
frame-shift mutations
Definition
result from insertion/ deletion --> screwed up codon reading
Term
spontaneous mutations
Definition
-bases can have 2 structures, rare structure pairs with wrong base
-bases may change bc of chemical reaction
-DNA polymerase can make errors in replication
-meiosis not perfect
Term
induced mutations
Definition
-chemicals can alter bases
-some chemicals add groups to bases
-radiation damages genetic material
Term
metabolism
Definition
totality of chemical reactions
Term
1st law of thermodynamics
Definition
energy is neither created nor destroyed
Term
2nd law of thermodynamics
Definition
disorder tends to increase
Term
catabolic reactions
Definition
break down reactants, release energy (exergonic reactions)
Term
anabolic reactions
Definition
make a single product out of many smaller reactants, consume free energy (endergonic)
Term
substrate
Definition
reactants in enzyme-catalyzed reaction
Term
prosthetic groups
Definition
distinctive, non-amino acid atoms or molecular groupings that are permanently bound to their enzymes
Term
cofactors
Definition
inorganic ions such as copper, zinc, and iron that bind to certain enzymes
Term
prosthetic groups
Definition
distinctive, non-amino acid atoms or molecular groupings that are permanently bound to their enzymes
Term
cofactors
Definition
inorganic ions such as copper, zinc, and iron that bind to certain enzymes
Term
coenzyme
Definition
carbon-containing molecule that is required for the action of one or more enzymes
Term
allosteric enzymes
Definition
control their activity by changing shape
Term
allosteric regulation
Definition
occurs when effector molecule binds to site other than active site --> enzyme changes shape
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