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BCMB chapter 1 (book)
notes from the book
10
Biochemistry
Undergraduate 4
01/22/2011

Additional Biochemistry Flashcards

 


 

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Term
noncovalent bonds
Definition
weaker than covalent but still important. examples: electrostatic interactions, hydrogen bonds, van der Waals, hydrophobic interactions
Term
covalent bonds
Definition
sharing of a pair of electrons(single bond) or multiple pairs (double/triple bonds). very strong: much energy must be expended to break.
Term
electrostatic interactions
Definition
a charged group on one molecule attracts opposite charge on another. E = kq1q2/Dr^2 (Coulombs' Law) D is dielectric constant. attraction is negative energy
Term
hydrogen bonds
Definition
type of electrostatic interaction. hydrogen atom is shared by two electronegative atoms such as N,O. donor has tighter link than acceptor. H bonds are weaker and longer than covalent.
Term
van der Waals interactions
Definition
distribution of charge around an atom fluctuates over time. transient assymetry forces opposite assymetry in surrounding atoms. this causes attraction up to contact distance where electron clouds overlap and repulsion happens.
Term
Water
Definition
polar: bent, not linear. highly cohesive. networks of H bonds hold structure together. versatile solvent.
Term
hydrophobic effect
Definition
nonpolar molecules prefer to interact with each other rather than water; they have this tendency more in water than in other less polar and self associating solvents.
Term
first law of thermodynamics
Definition
the total energy of a system and its surroundings is constant. energy can not be created or destroyed
Term
second law of thermodynamics
Definition
total entropy of a system plus surroundings always increases.
Term
pH formula (Henderson-Hasselbach eqn)
Definition
pH = pKa + log([A-]/[HA])
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