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biotechnology
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84
Biology
11th Grade
04/03/2013

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Term
How does bacteria need to respond to changes in environment?
Definition
quickly
Term
If bacteria has enough of a product, why do they need to stop production?
Definition
waste of energy to produce more
Term
If bacteria has enough of a product, how do they stop production?
Definition
stop production of enzymes for synthesis
Term
What happens when bacteria finds a new food/energy source?
Definition
Need to utilize it quickly
Term
Why does bacteria need to utilize new food/energy sources quickly?
Definition
metabolism, growth, and reproduction
Term
How does bacteria utilize new food/energy sources?
Definition
start production of enzymes for digestion
Term
In Feedback Inhibition, the product acts as an ______________ __________ of 1st enzyme in tryptophan pathway.
Definition
allosteric inhibitor
Term
Is feedback inhibition a useful production of enzymes?
Definition
No. It is a wasteful production of enzymes.
Term
What is this?

Instead of blocking enzyme function, block transcription of genes for all enzymes in tryptophan pathway.
Definition
Gene Regulation
Term
how does gene regulation save energy?
Definition
by not wasting it on unncessary protein synthesis
Term
How do cells vary amount of specific enzymes?
Definition
Regulate gene transcription
Term
What does it mean to regulate gene transcription?
Definition
turn genes on or off
Term
Is this gene being turned on or off?

if bacterium has enough tryptophan then it doesn't need to make enzymes used to build tryptophan
Definition
Turn genes OFF
Term
Is this gene being turned on or off?

if bacterium encounters new sugar (energy source) like lactose, then it needs to start making enzymes used to digest lactose.
Definition
turn genes ON
Term
In rapid growth, how often does generation occur?
Definition
every 20 minutes
Term
How many genes are generated overnight?
Definition
100 million
Term
True or false?

Cells cary the number of specific enzyme molecules by regulating gene expression
Definition
True
Term
True or False?

cells adjust the activity of enzymes already present
Definition
True
Term
genes grouped together with related functions
Definition
operon
Term
What is the promoter in an operon?
Definition
RNA polymerase binding site
Term
What does the single promoter control in Operons?
Definition
controls transcription of all genes in operon
Term
How is the promoter transcribed?
Definition
transcribed as one unit and a single mRNA is made
Term
what is the operator in an operon?
Definition
DNA binding site of repressor protein
Term
What three things does the repressor protein do?
Definition
binds to DNA at operator site

blocks RNA polymerase

blocks transcription
Term
How does the repressor protein turn off genes?
Definition
blocking RNA polymerase binding site
Term
When excess trytophan is present, it binds to _________ __________ _________ & triggers repressor to bind to DNA
Definition
tryp repressor protein
Term
What does the synthesis pathway model accomplish?
Definition
blocks transcription
Term
What happens when trytophan is present?
Definition
you don't need to make trytophan building enzymes
Term
Trytophan is _____________ _____________ of repressor protein
Definition
allosteric regulator
Term
In the Digestive pathway model, when lactose is present, it binds to _______ ______________ _____________& triggers repressor to release DNA
Definition
lac repressor protein
Term
What does the digestive pathway model induce?
Definition
transcription
Term
What happens when lactose is present?
Definition
need to make lactose-digesting enzymes
Term
Lactose is ____________ _______________ of repressor protein
Definition
allosteric regulator
Term
Repressible operons usually functions where?
Definition
anabolic pathways
Term
What does the repressible operon do to end products?
Definition
synthesizing
Term
In a repressible operon, when end product is present in excess, cell does what?
Definition
allocates resources to other uses
Term
Inducible operons usually function where?
Definition
catabolic pathways
Term
What does the inducible operon do to simpler molecules?
Definition
digests them
Term
What does the inducible operon produce?
Definition
produce enzmes only when nutrient is available
Term
small infectious particles consisting of nucleic acid enclosed in a protein coat, and, in some cases, a membranous envelope
Definition
Virus
Term
viral genomes may consist of.....
Definition
Double or single stranded DNA

Double or single stranded RNA
Term
What has the most complex caspids found among viruses?
Definition
Bacteriophages
Term
_______ are the best understood of all viruses
Definition
phages
Term
What two reproductive mechanisms do phages go through?
Definition
Lytic cycle

Lysogenic cycle
Term
A phage reproductive cycle that culminates in the death of the host and produces new phages and digests the host's cell, releasing progeny viruses
Definition
lyctic cycle
Term
replicates the phage genome without destroying the host
Definition
lysogenic cycle
Term
capable of using both the lyctic and lysogenic cycles of reproduction
Definition
temperate phages
Term
what uses the enzyme reverse transcriptase?
Definition
retroviruses
Term
In a retrovirus, what happens before integrating the host genome as a provirus?
Definition
copy RNA genome to DNA
Term
harmless derivatives of pathogenic microbes that stimulate the immune system to mount defense against actual pathogen, and can prevent certain viral illnesses
Definition
vaccines
Term
What are the simplest infectious agents?
Definition
Viroids and prions
Term
circular RNA molecules that infect plants and disrupt their growh
Definition
viroids
Term
slow-acting, virtually indestructable infections proteins that cause brain diseases in mammals, propagate by converting normal proteins to this new version
Definition
prions
Term
manipulation of DNA
Definition
genetic engineering
Term
one-celled prokaryotes
Definition
bacteria
Term
how does bacteria reproduce?
Definition
by mitosis through binary fission
Term
singular circular chromosome
Definition
bacterial genome
Term
What picks up naked foreign DNA, imports bits of chromosomes from other bacteria, and incorporates the DNA bits into their own chromosome?
Definition
transformation
Term
Small supplemental circles of DNA that are self replicating
Definition
plasmids
Term
insert plasmid into bacteria
Definition
vector
Term
restriction endonucleases

evolved in bacteria to cut up foreign DNA
Definition
restriction enzymes
Term
where is DNA cut at specific sequences?
Definition
restriction site
Term
In restriction enzymes, what do the "sticky ends" bind to?
Definition
any complimentary DNA
Term
Describe the steps of transformation
Definition
inserts recombinant plasmid into bacteria

grow recombinant bacteria in agar cultures

production of many copies of inserted gene

production of "new protein"
Term
How do we compare DNA fragments?
Definition
seperate fragments by size
Term
How do we separate DNA fragments?
Definition
run it through a gelatin called agarose made from algae
Term
What is the charge of DNA?
Definition
negative
Term
Since DNA moves in an electrical field, how does that help you compare DNA fragments?
Definition
size of DNA fragments affects how far it rravels
Term
When this happens, only bacteria with the plasmid will grow in antibiotic (ampicillin) plate
Definition
antibiotic becomes a selecting agent
Term
Tell the steps of DNA hybridization
Definition
find sequence of DNA usinga labled probe

heat treat DNA in gel

wash gel with probe
Term
In DNA libraries, what cuts up all nuclear DNA from many cells of an organism?
Definition
restriction enzyme
Term
In DNA libraries, what is it called when all fragments are cloned into DNA plasmids at the same time?
Definition
"shotgun" cloning
Term
In DNA libraries, what happens when a collection of DNA fragments are created and stored?
Definition
petri dish has a collection of all DNA fragments from the organism
Term
all DNA from many cells of an organism is cut with __________________ ___________________.
Definition
restriction enzymes
Term
In DNA libraries, _______________ ______________ are inserted into bacteria
Definition
recombinant plasmids
Term
plate of bacterial colonies storing & copying all genes from an organism
Definition
DNA library
Term
How can you located a gene of interest if you know the sequence of protein?
Definition
can "guess" part of DNA sequence

"back translate" protein to DNA
Term
plate with bacterial colonies carrying recombinant plasmids
Definition
cloning
Term
expose film

locate colony on plate from film
Definition
Locate
Term
press filter paper onto plate to take sample of cells from every colony
Definition
replicate plate
Term
heat filter paper to denature DNA

wash filter paper with radioactive probe which will only attach to gene of interest
Definition
hybridization
Term
How do you clean the "junk"?
Definition
us mRNA
Term
RNA ---> DNA

from retroviruses
Definition
reverse transcriptase
Term
Labeled cDNA hybridizes with DNA on slide
Definition
Microarrays
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