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ATP/Cofactor Stuff
atp, nad, fad, flavins, etc
22
Biochemistry
Undergraduate 2
11/29/2013

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Term
Catabolic pathways _________ while anabolic pathways __________
Definition
converge
diverge
Term
What are the two characteristics of metabolic pathways?
Definition
-they contain at least 1 irreversible reaction
-they are regulated (by transcription and by enzyme activity)
Term
What are the 3 general ways to elucidate metabolic pathways?
Definition
1. Metabolic inhibitors
2. Genetic modifications
3. Radioactive isotopes
Term
What are the 3 ways the use of biochemical genetics can be used to ID metabolic pathways?
Definition
-Genetic diseases
-Auxotrophic organisms
-Transgenic organisms
Term
What vitamin is Coenzyme A derived from?
Definition
B5 (pantothenic acid)
Term
What vitamin are NAD & NADP derived from?
Definition
B3 (niacin)
Term
What vitamin are FAD & FMN derived from?
Definition
(riboflavin)
Term
What if quinone receives 1 electron what is produced?
Definition
semiquinone
Term
If quinone receives 2 electrons what is produxed?
Definition
hydroquinone
Term
Is NADP involved in catabolic or anabolic pathways?
Definition
anabolic
Term
A hydride ion consists of __ proton(s) and __ electron(s)
Definition
1 ; 2
Term
_____ nucleotides commonly act as prosthetic groups
Definition
flavin
Term
What chemical mechanism allows ATP to drive reactions forward?
Definition
glutamine synthetase
Term
______ + ______ produce glutamine with the help of the enzyme ______
Definition
Glutamate + ammonia
enzyme: glutamine synthetase
Term
What is the first step in the glutamine synthetase mechanism?
Definition
1. ATP reacts with glutamate to produce a mixed annhydride
Term
What is the second step in the glutamine synthetase mechanism?
Definition
2. NH3 acts as a nucleophile, displacing the Pi group
Term
What is an adenylate moiety?
Definition
AMP
adenine monophosphate
Term
If ATP is hydrolyzed between the beta and gamma phosphates, what will be produced?
Definition
ADP and an inorganic phosphate
Term
If ATP is hydrolyzed between the alpha and beta carbons, what will be produced?
Definition
AMP and a pyrophosphate
Term
Why is the free energy produced from hydrolysis of ATP to AMP + PPi twice as large as the hydrolysis of ATP to ADP + Pi
Definition
Because both phosphoanhydride bonds are hydrolyzed
Term
Why is the free energy of the hydrolysis if ATP large and negative? (3 reasons)
Definition
-there is a repulsion between the negative phosphates of ATP
-the inorganic phosphate has greater resonance stabilization than ATP
-ADP2- rapidly ionizes to drive the reaction towards completion
Term
What bond would result in the release of a greater free energy: phosphoanhydride or phosphoester?
Definition
phosphoanhydride
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