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An S 352
Exam 3 Material
69
Agriculture
Undergraduate 3
04/05/2015

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Term
Direct Response to Selection
Definition
genetic change in a trait resulting from selection of that trait
Term
Correlated Response to Selection
Definition
genetic change in one or more traits resulting from selection in another
Term
Linkage
Definition
how closely genes are located on the chromosome
Term
Pleiotropy
Definition
a phenomenon of a single gene affecting more than one trait
Term
1) Linkage
2) Pleiotropy
Definition
2 causes of correlated response to selection:
Term
Phenotypic Correlation
Definition
measure of strength of the relationship between the phenotypic value in one trait and the phenotypic value in another trait
Term
Genetic Correlation
Definition
measure of strength of the relationship between the BV in one trait and the BV in another trait
Term
Environmental Correlation
Definition
measure of strength of the relationship between the environmental values in one trait and the environmental values in another trait
Term
-1 to 1
Definition
Range of Correlation
Term
1. Factors that affect a response to a trait that you are directly selecting for
2. Genetic correlation between traits X and Y
3. Genetic variation in the correlated trait
Definition
Factors that affect correlated response
Term
Direct Selection
Definition
selection for a trait as a means for improving that same trait
Term
Indirect Selection
Definition
selection for one trait as a means of improving a genetically correlated trait
Term
1. Difficult/Expensive to measure traits
2. Greater accuracy in a correlated trait
3. Indicator Traits
Definition
Why should we use indirect selection?
Term
Indicator Trait
Definition
a trait that may or may not be important in itself, but is selected for as a way of improving some other genetically correlated trait
Term
Single Trait Selection
Definition
selection pressure placed on only one trait (may result in correlated response)
Term
Multiple Trait Selection
Definition
placing direct selection pressure on more than one trait
- must use EBV
Term
Net Merit (Aggregate BV)
Definition
a value that represents an individuals genetic merit across more than one trait
Term
1. Tandem Selection 2. Independent Culling Levels 3. Selection Index
Definition
3 General Methods of Net Merit
Term
Tandem Selection
Definition
selection for one trait for a period of time followed by selection for a second trait
Term
Selection Target
Definition
a level of breeding value that is considered optimal
Term
1. Only successful when traits are "favorably" correlated
2. Genetic correlations make it impossible to maintain a trait at its optimal level
Definition
Disadvantages of Tandem Selection
Term
allows producers to be flexible and quickly respond to changing market needs
Definition
Advantage of Tandem Selection
Term
Unfavorable Genetic Correlation
Definition
improvement in one trait results in poorer performance in another trait
Term
Favorable Genetic Correlation
Definition
improvement in one trait results in improvement in another trait
Term
Independent Culling Levels
Definition
minimum standards for traits undergoing multiple trait selection
- animals failing to meet any one standard are rejected regardless of merit in other traits
Term
1. Simultaneous selection (as opposed to tandem selection)
2. Convenient for selection at different stages of the animal's life
3. Saves money by eliminating rejects early on
Definition
Advantages of Independent Culling Levels
Term
1. How do we determine culling levels?
a. if levels are too strict, may not have enough breeders
b. if levels are not strict enough, you will not make as
much genetic progress
2. Potential to exclude really good animals because they are not within the guidelines of a different trait
Definition
Disadvantages of Independent Culling Levels
Term
Economic Selection Index
Definition
an index or combination of weighing factors and genetic information on more than one trait
- used to predict an aggregate breeding value
Term
Economic Weight
Definition
the change in profit expected for a unit change in each of the traits
Term
1. Fastest, most efficient way to improve multiple traits
2. Balance superiority in one trait versus inferiority in another trait
3. The index clearly lays out traits and economic weightings of importance
Definition
Advantages of Economic Selection Index
Term
1. How do you determine the economic weightings?
2. Economic weights change over time
3. Assigns a single value to an animal that has many characterstics
Definition
Disadvantages of Economic Selection Index
Term
Inbreeding
Definition
the mating of relatives
- parents share a common ancestor
Term
1. Fixing favorable alleles
2. Uniformity
3. Create opportunity for hybrid vigor (heterosis)
Definition
Reasons to Inbreed
Term
Linebreeding
Definition
the mating of individuals within a particular line; a mating system designed to maintain a substantial degree of relationship to a highly regarded ancestor or group
Term
1. Increase heterozygosity
2 Increase genetic varience
3. Decrease uniformity
Definition
Reasons to Outbreed (Cross-breed)
Term
Outbreeding
Definition
the mating of unrelated individuals
Term
Hybrid Vigor/Heterosis
Definition
an increase in the performance of hybrids over that of purebreds
Term
Inbreeding Coefficient
Definition
a measure of the level of inbreeding in an individual
- the probability that both genes of a pair are identical by decent (IBD)
- the probable proportion of an individual's loci containing genes that are identical by descent
Term
Identical By Descent
Definition
genes that are copies of a single ancestral gene
Term
0 to 1
Definition
Inbreeding and Relationship Coefficient Range
Term
1. Formula
2. Path Method
3. Tabular Method
Definition
3 Methods to Calculate Inbreeding/Relationship Coefficient
Term
Path Method
Definition
a method for calculating inbreeding and relationship coefficients that simulates the paths taken by identical genes as they flow from ancestor to ancestor
Term
Tabular Method
Definition
a method for calculating inbreeding and relationship coefficients involving construction and updating of a table (Relationship Matrix) relating all members of a population
Term
Base Population
Definition
the population of animals whose parents are either unknown or ignored (typically the animals at the beginning of the pedigree)
Term
BLUP and Large-Scale Genetic Evaluation
Definition
Additional Methods to Calculate R(x,y) and F(x)
Term
Inbreeding Depression
Definition
the increased homozygosity and expression of unfavorable recessive alleles caused by inbreeding
Term
Direct Genetic Component
Definition
effect of an individual's genes on its performance
Term
Maternal Genetic Component
Definition
the effect of the genes in the dam that influence the performance of the individual through the environment provided by the dam
Term
Paternal Genetic Component
Definition
the effect of the genes in the sire that influence the performance of the individual through the environment provided by the sire
Term
Individual Hybrid Vigor
Definition
hybrid vigor for the direct component of a trait
Term
Maternal Hybrid Vigor
Definition
hybrid vigor for the maternal component of a trait
Term
Paternal Hybrid Vigor
Definition
hybrid vigor for the paternal component of a trait
Term
F1 Hybrid Vigor
Definition
the amount of hybrid vigor that is attainable in the first-cross individuals
- the maximum amount of attainable HV
Term
Retained Hybrid Vigor (Retained Heterosis)
Definition
hybrid vigor remaining in later generations of hybrids (after the F1 generations)
Term
Composite Animals
Definition
hybrids designed to retain hybrid vigor without crossbreeding
Term
1. Merit of component breeds
2. Hybrid vigor
3. Breed complementarity
4. Consistency of performance
5. Replacement considerations
6. Simplicity
7. Accuracy of genetic prediction
Definition
Ways to Evaluate Crossbreeding Systems
Term
Backcrossing
Definition
the mating of a hybrid to a purebred of a parent breed or line
Term
Sire x Dam Complementarity
Definition
mating sires strong in paternal traits to dams strong in maternal traits
Term
Rotational Crossbreeding System
Definition
a crossbreeding system in which generations of females are "rotated" among sire breeds in such a way that they are mated to sires whose breed composition is most different form their own
Term
Spatial Rotation
Definition
a rotational crossbreeding system in which all sire breeds are used simutaneously
Term
67%
Definition
%Retained Hybrid Vigor of a 2-way rotation using purebreds
Term
83%
Definition
%Retained Hybrid Vigor of a 2-way rotation using crossbreds
Term
86%
Definition
%Retained Hybrid Vigor of a 3-way rotation using purebreds
Term
93%
Definition
%Retained Hybrid Vigor of a 3-way rotation using crossbreds
Term
Rotations in Time
Definition
a rotational crossbreeding system in which sire breeds are not used simultaneously but are introduced in sequence
-reduced hybrid vigor due to backcrossing
-easier to manage; only one breeding site required
Term
Terminal Crossbreeding System
Definition
a crossbreeding system in which maternal-breed females are mated to paternal breed sires (terminal breeds) to efficiently produce progeny that are desirable from a market standpoint
Term
Static Terminal System
Definition
terminal sire crossbreeding system in which replacement females are either purchased or produced from separate purebred population within the system
Term
Rotational/Terminal System (Rota-Terminal)
Definition
a crossbreeding system combining a maternal rotation for producing replacement females with terminal sires for producing market offspring
Term
Composite Synthetic Animals
Definition
a hybrid animal with at least two breeds in its background
-bred to their own kind
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