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AB130
Exam 2 - Ch. 26 and 27
55
Biology
Undergraduate 1
04/22/2010

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Term
binomial
Definition
two-part latinized name of a species, consisting of the genus and specific epithet
Term
genus
Definition
taxonomic category above the species level, designated by the first word of a species two-part scientific name
Term
phyla
Definition
taxnomic category above class
Term
kingdoms
Definition
taxonomic category, the second broadest after domain
Term
phylogenetic tree
Definition
branching diagram that represents a hypothesis about the evolutionary history of a group of organisms
Term
PhyloCode
Definition
system of classifcation of organisms based on evolutionary relationships: only group that include common ancestor and all of its descendants are named
Term
branch points
Definition
representation of a phylogenetic tree of the divergence of two or more taxa from a common ancestor
Term
sister taxa
Definition
groups of organisms that share an immediate common ancestor and hence are each other's closest relatives
Term
rooted
Definition
describing a phylogenetic tree that contains a branch point representing the last common ancestor of all taxa in the tree
Term
polytomy
Definition
in a phylogenetic tree, a branch point from which more than two descendant taxa emerge; indicates that the evolutionary relationships among the descendant taxa are not yet clear
Term
analogy
Definition
similarity between two species that is due to convergent evolution rather than to descent from a common ancestor with the same trait
Term
homoplasies
Definition
similar structure or molecular sequence that has evolved independently in two species
Term
molecular systematics
Definition
scientific discipline that uses nucleic acids or other molecules in different species to infer evolutionary relationships
Term
monophyletic
Definition
pertaining to a group of taxa that consists of a common ancestor and all its descendants; equivalent to a clade
Term
paraphyletic
Definition
pertaining to a group of taxa that consists of a common ancestor and some, but not all of its descendants
Term
polyphyletic
Definition
pertaining to a group of taxa derived from two or more different ancestors
Term
maximum parsimony
Definition
principle that states that when considering multiple explanations for an observation, one should first investigate the simplest explanation that is consistent with the facts
Term
maximum likelihood
Definition
(systematics) principle that states that when considering multiple phylogenetic hypotheses, one should take inot account he hypothesis that reflects the mostly likely sequence of evolution events, given certain rules about how DNA changes over time
Term
phylogenetic bracketing
Definition
approach in which features shared by two groups of organism are predict (by parsimony) to be present in their common ancestor and all o fits descendants
Term
orthologous genes
Definition
homologous genes that are found in different species because of speciation
Term
paralogous genes
Definition
homologous genes that are found in the same genome as a result of gene duplication
Term
neutral theory
Definition
hypothesis that much evolutionary change in genes and proteins has no effect on fitness and therefore is not influenced by Darwinian natural selection
Term
horizontal gene transfer
Definition
transfer of genes from one genome to another through mechanisms such as transposable elements, plasmid exchange, viral activity, and perhaps fusions of different organisms
Term
peptioglycan
Definition
type of polymer in bacterial cell walls consisting of modified sugars cross-linked by short polypeptides
Term
Gram stain
Definition
staining a method that distinguishes between two different kinds of bacterial cell walls
Term
Gram-positive
Definition
describing the group of bacteria that have a cell wall that is structurally less complex and contains more peptioglycan than the cell wall of gram-negative; usually less toxic
Term
Gram-negative
Definition
describing the group of bacteria that have a cell wall that is structurally more complex and contains less peptidoglycan than the cell wall of gram-positive bacteria; often more toxic
Term
fimbriae
Definition
short, hairlike appendage of a prokaryotic cell that helps it adhere to the substrate or to other cells; also known as an attachment pilus
Term
sex pili
Definition
in bacteria, a structure that links one cell to another at the start of conjugation; also known as a conjugation pilus
Term
taxis
Definition
oriented movement toward or away from a stimulus
Term
nucleoid region
Definition
region in a prokaryotic cell consisting of a concentrated mass of DNA
Term
plasmids
Definition
small, circular, double-stranded DNA molecule that carries accessory genes separate from those of a bacterial chromosome; also found in some eukaryotes (yeast)
Term
transformation
Definition
change in genotype and phenotype due to the assimilation of external DNA by a cell
Term
transduction
Definition
type of horizontal gene transfer in which phages (viruses) carry bacterial DNA from one host cell to another
Term
conjugation
Definition
in prokaryotes, the direct tranfer of DNA between two cells (of same or different species) that are temporarily joined; in ciliates, secual process in which two cells exchange haploid micronuclei
Term
F plasmid
Definition
plasmid form of the F factor
Term
F factor
Definition
in bacteria, DNA segment that confers the ability to form pili for conjugation and associated function required for the transfer of DNA from donor to recipient; may exist as a plasmid or integrated into the bacterial chromosome
Term
R plasmids
Definition
bacterial plasmid carrying genes that confer resistance to certain antibiotics
Term
obligate aerobes
Definition
organism that requires oxygen for cellular respiration and cannot live without it
Term
obligate anaerobes
Definition
organism that only carries our fermentation or anaerobic respiration; cannot use oxygen and might be poisoned by it
Term
heterocytes
Definition
specialized cell that engages in nitrogen fixation in some filamentous cyanobacteria; formerly called heterocyst
Term
biofilms
Definition
surface-coating colony of one or more species of prokaryotes that engage in metabolic cooperation
Term
extreme halophiles
Definition
organism that lives in a highly saline environment, such as the Great Salt Lake or the Dead Sea
Term
exteme thermophiles
Definition
organism that thrives in hot environemnts (60-80+ degrees Celsius)
Term
decomposers
Definition
any of the saprobic fungi and prokaryotes that absorb nutrients from nonliving organic material, (such as corpses, fallen plant material, an the wates of living organism) and convert them to inorganic forms; a detritivore
Term
symbiont
Definition
smaller participant in a symbionotic relationship, living in or on the host
Term
host
Definition
larger participant in a symbiotic relationship, serving as home an food source for the smaller symbiont
Term
mutualism
Definition
symbiotic relationship in which both participants benefit
Term
commensalism
Definition
symbiotic relationship in which one organism benefits but the other is neither helped nor harmed
Term
parasitism
Definition
symbiotic relationship in which one organism, the parasite, benefits and the expense of another, the host, by living either within or on the host
Term
parasite
Definition
organism that feeds on the cell contents, tissues, or body fluids of another species (the host) while in or one the host organism; harm but do not kill their host
Term
pathogens
Definition
organism or virus that causes disease
Term
exotoxins
Definition
toxic protin that is screted by a prokaryote or other pathogen and that produces specific symptoms, even if the pathogen is no longer present
Term
endotoxins
Definition
toxic component of the outer membrane of certain gram-negative bacteria that is released only when the bacteria die
Term
bioremediation
Definition
use of living organism to detoxify and restore polluted and degraded ecosystems
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