Shared Flashcard Set

Details

151 Test 2
just some vocab from book
182
Biology
Undergraduate 1
03/31/2009

Additional Biology Flashcards

 


 

Cards

Term
somatic cells
Definition
all cells except reproductive cells
Term
gamete
Definition
sperm or egg - haploid
Term
sister chromatids
Definition
contain exact same genetic info
Term
centromere
Definition
special region where cromatids are closely attached
Term
Mitosis
Definition
division of nucleus
Term
cytokinesis
Definition
division of cytoplasm
Term
meiosis
Definition
yields nonidentical haploid daughter cells
Term
mitotic (M) phase
Definition
includes mitosis and cytokinesis, shortest part of cell cycle
Term
interphase
Definition
90% of cycle, longer stage, cell grows and cpis chromosomes
Term
G1
Definition
cell growth
Term
S phase
Definition
copies chromosomes
Term
g2
Definition
prepares for division
Term
centrosome
Definition
a subcellular region containing material that functions though-out the cell cycle to organize the cell's microtubules.
Term
aster
Definition
radical array of short microtubules that extends from each centrosome
Term
kinetochore
Definition
structural protein at centromere, used to pull apart
Term
cleavage
Definition
process by which cytokinesis occurs
Term
cleavage furrow
Definition
shallow groove in the cell surface near old metaphase plate
Term
cell cycle control system
Definition
cyclically operating set of molecules in the cell that both trigger and coordinate key events in the cell cycle
Term
checkpoint
Definition
control point where stop and go-ahead signals can regulate the cycle (G1, G2 and M)
Term
growth factor
Definition
a protein released by certain cells that stimulates other cells to divide
Term
transformation
Definition
process that converts normal cells to cancer cells
Term
benign tumors
Definition
lump of normal cells
Term
malignant tumor
Definition
invasive tumors that impair the function of one of more organs
Term
genes
Definition
unit of hereditary info coding for specific animo acid sequence
Term
locus
Definition
genes location along length of chromosome
Term
homologous chromosome
Definition
pair carrying genes controlling the same inherited characters
Term
autosomes
Definition
all chromosomes besides sex
Term
diploid
Definition
any cell with two chromosome sets
Term
haploid
Definition
has haploid number of chromosome
Term
zygote
Definition
fertilized egg
Term
alternation of generations
Definition
both diploid and haploid stages that are multicellular
Term
synapsis
Definition
homologous pairs line up and connected allowing crossing over
Term
chaisma
Definition
x-shaped region holding homologous together and limit crossing over
Term
recombinant chromosomes
Definition
indiviguals that carry genes from two different parents
Term
character
Definition
heritable feature that varies among individuals
Term
each variant for a character
Definition
Term
hybridization
Definition
the mating of two true-breeding varieties
Term
p generation
Definition
parent generation
Term
F1 generation
Definition
first filial generation
Term
alleles
Definition
alternate versions of genes
Term
test cross
Definition
breeding of an unknown by an homo recessive
Term
mono hybrid
Definition
heterozygous for one character
Term
dihybrid
Definition
individuals heter for two characters
Term
incomplete dominance
Definition
offspring show a mixture of the two parent traits
Term
codominance
Definition
both alleles effect and are 'expressed'
Term
pleiotropy
Definition
have multiple phenotypic effects
Term
epistasis
Definition
gene at one locus alters phenotypic expression of a gene at second locus
Term
polygenic inheritance
Definition
effect of two or more genes on single phenotypic character
Term
multifactorial
Definition
environmental influence phenotypically
Term
wild type
Definition
most often observed in the natural population
Term
sex-linked gene
Definition
located on either sex chromosomes
Term
barr body
Definition
inactive X in females that lies along the inside of the nuclear envelope
Term
linked genes
Definition
genes located on the same chromosome
Term
genetic recombination
Definition
production of offspring with traits that different from parents
Term
linkage map
Definition
genetic map based on recombination frequencies
Term
map units
Definition
one recombination frequency
Term
nondisjunction
Definition
members of homologous pair do not move apart properly during meiosis 1 or 2
Term
monosomic
Definition
2n-1
Term
trisomic
Definition
2n+1
Term
polyploidy
Definition
chromosome alteration
Term
deletion of chromosome
Definition
part of chromosome fragment is lost
Term
duplication
Definition
deletion added to another chromosome causing repeat in sequence
Term
inversion
Definition
chromosome fragment reattaches to original chromosome but in reverse order
Term
translocation
Definition
fragment joins to non-homologous chromosome
Term
genomic imprinting
Definition
variation in phenotype depending on who the allele was inherited from
Term
transformation
Definition
change in genotype and phenotype due to the assimilation of external DNA by a cell
Term
chargaffs rule
Definition
A-T C-G numbers simular
Term
purines
Definition
adenine and guanine - two organic rings
Term
pyrimidines
Definition
cytosine and thymine - one ring
Term
origins of replication
Definition
short stretches of DNA having a specific sequence of nucleotides
Term
replication fork
Definition
y-shaped region where the parental strands of of DNA are being unwound
Term
helicases
Definition
enzymes that untwist the double helix
Term
singe strand binding protein
Definition
bind to unpaired DNA to stabilize
Term
Topoisomerase
Definition
relieves winding strain by breaking, swiveling, and rejoining them
Term
DNA polymerase
Definition
catalyzes the synthesis of new DNA by adding nucleotides to preexisting chains
Term
leading strand
Definition
one primer is needed and then the replication is continuous
Term
lagging strand
Definition
moves away from replication fork in small segments
Term
Okazaki fragments
Definition
segments of lagging strand
Term
DNA ligase
Definition
joins Okazaki fragments
Term
DNA pol 3
Definition
synthesizes new DNA by adding nucleotides to 3' end of pre-existing DNA strand or primer
Term
DNA pol 1
Definition
removes RNA nucleotides of primer from 5' end and replaces them with DNA nucleotides.
Term
telomeres
Definition
repetitive sequence at the end of DNA that protects from erosion during rounds of replication
Term
chromatin
Definition
DNA combined with large amounts of protein
Term
heterochromatin
Definition
tightly packed chromosomes
Term
euchromatin
Definition
loosely packed chromosomes
Term
gene expression
Definition
process by which DNA directs the synthesis of proteins
Term
transcription
Definition
synthesis of RNA under the direction of DNA
Term
messenger RNA
Definition
carries genetic messages from DNA to protein-synthesizing machinery
Term
Translation
Definition
sisthesis of polypeptide under the direction of mRNA
Term
ribosomes
Definition
site of translation
Term
central dogma
Definition
DNA --> RNA --> protein
Term
codon
Definition
mRNA base triplets written 5' to 3'
Term
RNA polymerase
Definition
pulls strands of DNA apart and joins nucleotides as the base pair along
Term
promotor
Definition
DNA sequence where RNA polymerase attaches and initiates transcription
Term
terminator
Definition
sequence that ends transcription in bac.
Term
transcription unit
Definition
stretch of DNA that is transcribed into RNA
Term
RNA pol 2
Definition
used in mRNA synthesis
Term
transcription factors
Definition
collection of proteins that mediate the binding of RNA polymerase and the initiation of transcription
Term
transcription initiation complex
Definition
whole complex of transcription factors and RNA pol 2 bound to promotor
Term
TATA box
Definition
DNA forming initiation complex in eukaryotic promotor
Term
5' cap
Definition
modified form of guanine that reduces degradation
Term
poly A tail
Definition
50-250 A nucleotides that facilitate export, protect from degradation and help ribosomes attach
Term
RNA splicing
Definition
removal of introns from mRNA that will then not be translated
Term
introns
Definition
noncoding segments
Term
exons
Definition
expressed regions
Term
splicosome
Definition
several snRNPs joined with additional proteins to form an even larger assembly
Term
alternative RNA splicing
Definition
allows for a single gene to code for more than one polypeptide
Term
transfer RNA
Definition
transfer amino acids from cytoplasmic pool of amino acids to a ribosome
Term
anticodon
Definition
end of tRNA, nucleotide triplet complementary to mRNA
Term
animoacyl-tRNA synthetases
Definition
carries out correct matching of tRNA and amino acids
Term
ribosomal RNA
Definition
ribosomal subunits constructed of proteins and Rna molecules - most abundant
Term
polyribosomes
Definition
string of ribosomes during translation
Term
base-pair substitution
Definition
replacement of one nucleotide and its partner with another pair
Term
missense mutation
Definition
change one amino acid to another
Term
insertion
Definition
addition of nucleotides
Term
deletion
Definition
removal of a nucleotide
Term
frameshift mutation
Definition
moves reading frame causing false sequence
Term
mutegens
Definition
chemical and physical agents that cause mutations
Term
opetator
Definition
the switch on a segment of DNA and controls the access of RNA pol to the genes
Term
operon
Definition
operator, promotor and the genes they control
Term
repressor
Definition
protein that can switch off operon
Term
regulatory gene
Definition
(trp) located far from operon and has own promotor
Term
corepressor
Definition
a small molecule that cooperates with a repressor protein to switch an operon off
Term
inducer
Definition
inactivated the repressor
Term
cyclic AMP
Definition
allosteric regulatory protein
Term
activator
Definition
CAP, protein that binds to DNA and stimulates transcription of a gene
Term
differential gene expression
Definition
the exxpression of different genes by cells with the same genome
Term
histone acetylation
Definition
acetyl groups are added to lysines in histone tails- increase transcription
Term
epigenetic inheritance
Definition
inheritance of traits transmitted by mechanisms not directly involving the nucleotide sequence
Term
control elements
Definition
segments of noncoding DNA that help regulate transcription by binding to certain proteins
Term
enhancers
Definition
distal control elements
Term
proteasomes
Definition
recognize ubiquitin tagged proteins and degrade them
Term
microRNA
Definition
small single stranded RNA molecules that are capable of binding to complementary sequences in mRNA
Term
RNA interference
Definition
turn off expression of a gene with same sequence as the RNA
Term
small interfering RNA
Definition
small in size and function to miRNA
Term
oncogenes
Definition
cancer causing genes
Term
proto-oncogenes
Definition
normal versions of the cellular genes that code for normal growth and division
Term
tumor-suppressor gene
Definition
help prevent uncontrolled cell growth
Term
ras gene
Definition
G protein the relays a signal from a growth factor receptor n plasma membrane to a cascade of protein kinases
Term
p53 gene
Definition
coded for specific transcription factor that promotes the synthesis of cell cycle inhibiting proteins
Term
Frederick Griffith experiment
1920s
Definition
documented movement of genes from one organism to another (transformation)
movement of material can alter the genetic makeup of the recipient cell
R and S
Term
Oswald Theodore Avery, Colin MacLeod,
and Maclyn McCarty
Definition
Only purified DNA from type S could transform type R
Purified DNA might still contain traces of contamination that may be the transforming principle
Added DNase, RNase and proteases
RNase and protease had no effect
With DNase no transformation
DNA is the genetic material
Term
Hershey-Chase experiment
Definition
determined hereditary information was DNA, not protein
(phages and tagging)
Term
Rosalind Franklin
Definition
x-ray defraction
Term
Watson & Crick
Definition
supported semiconservative model
Term
Meselson-Stahl experiment
Definition
used centrifuge and label DNA with N 14 and 15 to see how replication occured
Term
DNA replication is very accurate (reasons)
Definition
Hydrogen bonding between A and T or G and C more stable than mismatches

Active site of DNA polymerase unlikely to form bonds if pairs mismatched

DNA polymerase removes mismatched pairs

Proofreading results in DNA polymerase backing up and digesting linkages

Other DNA repair enzymes
Term
nuclease
Definition
cuts error in DNA sequence
Term
Telomeres
Definition
Telomeres shorten with each mitotic division too short = no more division

Cells typically divide 20-50x

Telomere shortening may be the cause of aging
Term
sigma factor
Definition
Richard Burgess-The protein that gives promoter-recognition specificity to the RNA polymerase core enzyme of bacteria.
Term
Direction of transcription and DNA strand used varies among genes
Definition
In all cases, synthesis of RNA transcript is 5’ to 3’ and DNA template strand reads 3’ to 5’
Term
How to build a protein
Definition
The code: mRNA

Adaptors to match codons and amino acids
tRNA (+ aminoacyl-tRNA synthetase)

An assembler: ribosome
Term
Stages of Translation
Definition
Initiation
mRNA, first tRNA and ribosomal subunits assemble
Elongation
Synthesis from start codon to stop codon
Termination
Complex disassembles at stop codon releasing completed polypeptide
Term
polypeptide facts
Definition
Polypeptide chain has directionality
Parallels 5’ to 3’ orientation of mRNA
N-terminus or amino terminus is first amino acid
C-terminus or carboxyl terminus is last amino acid
Term
Messenger RNA (mRNA)
Definition
Carries information specifying amino acid sequences of proteins from DNA to ribosomes
Term
Transfer RNA (tRNA)
Definition
Serves as adapter molecule in protein synthesis; translates mRNA codons into amino acids
Term
Ribosomal RNA (rRNA)
Definition
Plays catalytic (ribozyme) roles and structural roles in ribosomes
Term
Primary transcript
Definition
Serves as a precursor to mRNA, rRNA, or tRNA, before being processed by splicing or cleavage
Term
Small nuclear RNA (snRNA)
Definition
Plays structural and catalytic roles in spliceosomes
Term
SRP RNA
Definition
Is a component of the the signal-recognition particle (SRP)
Term
Small nucleolar RNA (snoRNA)
Definition
Aids in processing pre-rRNA transcripts for ribosome subunit formation in the nucleolus
Term
Small interfering RNA (siRNA) and microRNA (miRNA)
Definition
Are involved in regulation of gene expression
Term
Bacterial gene regulation
Definition
Most commonly occurs at the level of transcription
Or control rate mRNA translated
Or regulated at protein or post-translation
Term
Transcriptional regulation in bacteria
Definition
Involves regulatory transcription factors
Bind to DNA in the vicinity of a promoter and affect transcription of one or more nearby genes
Repressors inhibit transcription
Negative control
Activators increase the rate of transcription
Positive control
Term
cAMP in Lac
Definition
Lactose present, glucose scarce (cAMP level high): abundant lac
mRNA synthesized
Term
Genes involved with breaking down lactose
Definition
(lac operon)
Negative regulation – because the repressor protein shuts down gene expression
Positive regulation – because Catabolite Activator Protein (CAP) turns gene expression up
Inducible – because the target of the gene products (lactose/allolactose) turns gene expression on
Term
Histones
Definition
= proteins used to pack DNA
Term
Chromatin
Definition
= DNA-histone complex
Term
Methylation can inhibit transcription in 2 general ways
Definition
Methylation of CpG islands may prevent an activator from binding to an enhancer element
Converting chromatin from an open to a closed conformation
Methyl-CpG-binding proteins bind to methylated sequences and recruit proteins that condense the chromatin
Term
3 features found in most promoters
Definition
Transcriptional start site
Where transcription begins
With TATA box forms core promoter
By itself results in low level basal transcription
TATA box
5’ – TATAAAA – 3’
25 base pairs upstream from transcriptional start site
Determines precise starting point for transcription
Response elements
Recognized by regulatory proteins that control initiation of transcription
Enhancers and silencers
Term
The Roles of Transcription Factors
Definition
To initiate transcription, eukaryotic RNA polymerase requires the assistance of proteins called transcription factors
General transcription factors are essential for the transcription of all protein-coding genes
In eukaryotes, high levels of transcription of particular genes depend on control elements interacting with specific transcription factors
Term
Alternative splicing of pre-mRNAs
Definition
In eukaryotes, a pre-mRNA transcript is processed before it becomes a mature mRNA
When a pre-mRNA has multiple introns and exons, splicing may occur in more than one way
Alternative splicing causes mRNAs to contain different patterns of exons.
Allows same gene to make different proteins
At different stages of development
In different cells types
In response to a change in the environmental conditions
Term
MicroRNAs
Definition
miRNAs are small RNA molecules that silence the expression of specific mRNAs
Widely found in animals and plants
Important mechanism of mRNA silencing
Effect also called RNA interference (RNAi
Term
MicroRNAs
Definition
First synthesized as pre-miRNA
Cut by Dicer to release miRNA
Associates with cellular proteins to become RNA-induced silencing complex (RISC)
Directs RISC to specific mRNAs
In some cases binding inhibits translation
Or RISC degrades mRNA
Term
The 5 “superpowers” of cancer
Definition
Growth stimulatory signals

−Growth inhibitory signals

−Apoptosis resistance

−Infinite proliferative capacity

−Angiogenic potential
Term
p53
Definition
p53 is a G1 checkpoint protein
Expression of the p53 gene is induced when DNA is damaged
Then, a cell cannot progress from G1 to the S, or synthesis, phase of the cell cycle
If DNA is repaired, a cell may later proceed through the cell cycle
Term
Chromosomal mutations
Definition

Deletion- Segment missing

 Duplications Section occurs 2 or more times in a row

Inversions -Change in direction along a single chromosome

Translocations- One segment becomes attached to another chromosome

Term
Polyploid
Definition
– 3 or more sets of chromosomes
Term
pleiotropy
Definition
Most genes have multiple phenotypic effects, a property called
Term
amniocentesis
Definition
In amniocentesis, the liquid that bathes the fetus is removed and tested
Term
chorionic villus sampling (CVS)
Definition
In chorionic villus sampling (CVS), a sample of the placenta is removed and tested
Term
Epigenetic inheritance
Definition
Modification of a gene or chromosome during egg formation, sperm formation, or early stages of embryo growth alters gene expression in a way that is fixed during an individual’s lifetime
Permanently affect the phenotype of the individual, but they are not permanent over the course of many generations and they do not change the actual DNA sequence
Supporting users have an ad free experience!