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1001 Final
Ch 10 and 11
54
Biology
Undergraduate 1
12/07/2009

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Term
DNA
Definition

the instructions that tell the cell what to do

> Usually result in proteins

> study of metabolic defects provided evidence that genes lead to proteins

Term
Archibald Garrod
Definition

study of metabolic defects provided evidence that genes lead to proteins

> suggested that some metabolic disorers were caused by a blocked pathway (1909)

> inherited diseases were the result of the lack of an enzyme

Term
2 bad things about blockage in a pathway
Definition

> stops production of something we need

> may lead to the accumulation of something we don't want

Term
George Beadle and Edward Tatum
Definition
conducted experiment with bread mold, neurospora             crassa, and demonstrated that different mutants (generated by x-rays) had the     pathway of arginine (an amino acid) synthesis blocked at different steps.
Term
Beadle and Tatum figured this out
Definition
deduced that the 3 different mutant types each lacked a different enzyme in the pathway which synthesizes arginine.
            From these results, they formulated the one gene-one enzyme hypothesis
Term
Step one: DNA to RNA
This process is called transcription
Definition
> Transcription is the synthesis of RNA using DNA as a template
            > The RNA is complementary to the DNA
            > instead of A T, A bonds with U (Uracil)
Term
messenger RNA (mRNA)
Definition
> RNA that is synthesized from a gene coding for a protein called 
Term
Ø  Differences between DNA and RNA:
Definition

1. Sugar – deoxyribose (DNA) versus ribose (RNA)
2. Base – thymine (DNA) is replaced by Uracil (RNA)

Term
[image]
Definition
Term
During transcription of a gene, only one strand (template strand) of the DNA’s two strands is read. Why?
Definition
Different genes use different strands as the template strand.
Term
Step two: RNA to protein
> This process is called translation
Definition

Translation is the synthesis of a polypeptide directed by mRNA

Called translation because

** Converting the language of nucleic acids into the language of proteins
 > 4 bases in nucleic acids
    > 20 amino acids in proteins

Term
Translation occurs on the ...
Definition
ribosomes
Term
During translation, proteins are synthesized according to the genetic message of sequential _______ in the mRNA
Definition
codons  (3 amino letters in a row)
Term
Transfer RNA (tRNA) and ribosomal RNA (rRNA)
Definition
acts as the “interpreter” between the nucleotide “language” of mRNA and the amino acid “language”  of proteins
In the genetic code, a triplet of nucleotides specifies an amino acid
Term

Dictated by the math, since there are 4 nucleotides and 20 amino acids

4 different nucleotides, combining as codons, which are 3-nucleotide sequences.

There are as many as ___ amino acids

But there are only ___, since

Definition

64 (43);

20; each amino acid is usually encoded by more than one codon.

Term
Codon
Definition
is a three-nucleotide sequence in mRNA that specifies which amino acid will be added to a growing polypeptide  or signals the termination of translation.
Term

> __ of the __ possible codons code for amino acids

> the remaining __ triplets signal the translation to start (start codon) and translation to stop (stop codon)
> Since there are only __ amino acids, more than one triplet can code for the same amino acid
> This relationship makes the code ______, or degenerate
> The codons usually differ only at the third position
> There is no ambiguity in the triplet code since a given triplet codes for one and only one amino acid

Definition

> 60 of 64

> 4

> 20

> redundant

Term
RNA polymerase binds to the ________ region of DNA near the beginning of a ____, separating the double helix near the promoter
Definition
promoter; gene
Term
  RNA polymerase travels along the DNA template strand, catalyzing the addition of _____________ into an RNA molecule.
> The nucleotides in the RNA are __________ to the template strand of the DNA
Definition

ribose nucleotides

> complementary

Term
At the end of a gene, RNA polymerase encounters a sequence of DNA called a __________.
> RNA polymerase detaches from the DNA and releases the RNA molecule.
Definition
termination signal
Term
After termination, the DNA completely rewinds into a double helix.
> The RNA molecule is free to move from the ______ to the ________ for translation, and RNA polymerase may move to another gene and begin transcription once again, or it can even re-bind the same promoter and transcribe the same gene again.
Definition
> nucleus; cytoplasm
Term
_______ is the RNA-directed synthesis of polypeptides
> During this, proteins are synthesized according to the genetic message of sequential codons in the mRNA.
Definition
Translation
Term
> The sequence of nucleotides present in the DNA is reflected by the sequence in the RNA.
AND
> The sequence of nucleotides in a mRNA determines the sequence of ________
Definition
amino acids
AND
> The sequence of amino acids determines the protein.
Term
The ribosome is where the _______________
The ribosome coordinates the pairing of tRNA anticodons with ______
Definition

proteins are built.

 mRNA codons

Term
Ribosomes have 2 sites:
>___site – holds the tRNA with the polypeptide chain attached.
> ___ site – holds the tRNA when the next amino acid to be added
Definition

> P

> A

Term
The ________ holds all the components together as enzymes transfer the next amino acid to the             growing polypeptide
Definition
ribosome
Term
_____acts as the “interpreter” between the nucleotide language of mRNA and the amino acid             language of proteins.
Definition
tRNA
Term
In part of this role as “interpreter,” the tRNA must “read” the mRNA.
This is accomplished by the ______portion of tRNA
Definition
anticodon
Term
The other portion of the tRNA’s role as “interpreter” is to transfer the correct amino acid from the             _____________ to the ribosome for protein sythesis.
Definition
cytoplasmic pool of amino acids
Term
Protein sythesis occurs in three stages:
Definition
1. Initiation
2. Elongation
3. Termination
Term
1. The initiation complex binds to an mRNA molecule.
The methionine (met) tRNA anticodon (UAC) base-pairs with the ______ (AUG) of the mRNA.
Definition
start codon
Term
2. Elongation
The next tRNA occupies the A site and the anticodon hydrogen bonds to the codon of the mRNA
Peptide bond formation
Definition
> The methionine from the initiator tRNA forms a peptide bond with the amino acid on the tRNA at the             A site.
> This leaves the tRNA at the P site with no amino acid, and the tRNA at the A site with a dipeptide             attached
> The tRNA vacates the P site
> The ribosome moves one codon down the mRNA
            This translocates the tRNA (with the growing peptide) form the A site to the P site.
Term
3. Termination
Definition
the mRNA reaches a stop codon; UAA, UAG, or UGA
            Stop codon is a tiplet codon that signals the end of translation.
Term
________ can affect the function of a protein.
Definition
Point mutations
Term
  _________ are permanent changes in the DNA that can involve large chromosomal regions or a single nucleotide pair.
Definition
Mutations
Term
_________ are mutations limited to one or two nucleotides in a single line
Definition
Point mutations
Term
__________ is the insertion of one or more nucleotide pairs into a gene
Definition
Insertion
Term
_______ is the deletion of one or more nucleotide pairs from a gene
Definition
Deletion
Term
The _______ is the sequence of activities that occurs between one cell division and the next.
Definition
cell cycle
Term

Cell division is divided into 3 stages:

 

Definition

o   Growth

o   Renewal and Repair

o   Reproduction

Term
Cell division
Definition

the process in which the genetic information of a cell is passed along to the next generation of cells.

o   Involves the division of a parent cell into 2 daughter cells.

o   Characteristics of cell division

§  Replication of DNA

§  Equal distribution of DNA to opposite ends of the dividing cell

§  Separation into 2 daughter cells

Term
Asexual Reproduction
Definition

Reproduction in which offspring are formed from a single parent, rather than through a fusion of gametes (sperm and egg) as in sexual reproduction.

 

> Asexual reproduction involves only one parent. Produces genetically identical offspring.

Term

Bacteria reproduce by binary fission

Binary fission is ...

 

Definition
 a prokaryotic cell division, which literally means “splitting in two”
Term
What happens during binary fission:
Definition

> the circular DNA double helix is attached to the plasma membrane at one point.


> The DNA replicates and the two DNA double helices attach to the plasma membrane at nearby points.


> The plasma membrane between the attachment points enlarges, pushing them farther apart.


> Once the cell has doubled in size, the plasma membrane rapidly grows inward between the 2 DNA attachment sites.


> The parent cell divides into 2 daughter cells, each containing a complete chromosome.

Term
If the organism is single-celled then a cell cycle can be the same as the ______
Definition
life cycle
Term
The cell cycle is ...
Definition
a well-ordered sequence during which the cell divides, grows, and prepares to divide again.
Term
During the cell cycle, interphase alternates with ______
Definition
mitosis (aka M phase)
Term
Interphase is ...
Definition
the period of the cell cycle when the cell is not dividing.
Term
Interphase facts (5)
Definition

o   Non-dividing phase.

o   During this time, the cell is acquiring nutrients from its environment, growing, and replicating its DNA

o   Interphase makes up about 90% of the cell cycle

o   High metabolic activity

o   Chromosomes and organelles are duplicated

Term
Example of chromosomes and organelles being duplicated
Definition
§  Ex. Human skin cells divide about once a day.
These skin cells spend about 22 hours in interphase.
Consists of 3 phases: G1 phase, S phase, and G2 phase.
Term

  G1 to G0 phase

o   Some cells can exit G1 and enter G0 phase

Definition

During G0, cells do not replicate their DNA and do not divide.

 

> During G0, cells do not replicate their DNA and do not divide.

> Many cells undergo a process called differentiation in G0 where the external signals that it receives will determine what type of cell it becomes.

> Many differentiated cells, including most of those in your heart, eye, and brain will stay in G0 for the rest of your life.

> Most of these cells do NOT divide.

Term
Cell division consists of nuclear division and cytoplasmic division
Definition

Mitosis is the division of the cell nucleus

§  During this process the DNA is equally distributed into 2 daughter nuclei.

Term
The division of the nucleus is usually followed quickly by cytokinesis
Definition
Cytokinesis is the divisino of the cytoplasm that forms 2 separate daughter cells, each containing a single nucleus.
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